Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009523

Physical Location & Seq

Genomic Coordinates Forward (+)

10897739 .. 10900457

Gene Structure 2719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGACAAGAAACGCCGCGTTTTGTGTCGTTTCGTTTTTATACAAAAACCCTAAACCTGAAGTGATTAGCTTTTTTCTTTCTTCAGCTTTCAAGTCGCGAGCTGCAAAGCCAAAAGAGGTCGCAGCAATGGAGACCCCGCAGCAGCAGATTCAAGTCGATCTGGGTAATCTCATGGCCTTCGACCCTCATCACAGCTTCCCCTCCATCCCCTCCTCCAGGGAGGAATTAGTGAAGGAATGTATAACGAAAGGGACCGAGTTGGTTCAAGCTATTGCGAATAGCCTTTTCAACTTACCTTCAACTGAGGACATAGACGGTCCCATTGTGCAGTTGCCGCGTCCCGAAACTAAACTGCCTAGACAGAAGCATCTGCCAGTGCCTAAACCTCCAACAAAATGGGAAACTTTTGCCAAAACAAAAGGTATCAAGAACCGTAAAAGAGACAAGATTGCATATGATGAGCCAACTGAAACTTGGAAACGTCGCTTTGGATATGATCGTGCAAATGATGAGAATAGTGTACCAATCATTGAGGCGAAGGAGAATGATGTGCCAGGGGAGGATCCTTTTGCTAAAAGGCGAGAGGATAAGAAGAAAAGAGTTGAAAAGCAAGATAAGAATAGGTTGCAGAACTTGAAGCAAGCTGCGAAAGTCGGTGCTTTACCAAGCCATGTTCAGCTAGCTGCCACACGGTTGCCCATAACGGGAACCCAGTCTGTAGCCAAGAAGTTTCCTAAAGATGAACTGGGTAATGTAGCTGGAATAGCAGCAACCGCAACGGCCAGCGGTGGTAAGTTTGACAAGAAATTGCCTGGTGAAAAGCCTCCTAAACATAAAGGAAAGTTCCGCAAGTTTTTGCCGGTTGTAGAAGGAAAAGGAAAACAATCACAAGAGAAGGAGCAAACAGATAAAGTACTGAACAAGCTAATCTCTAAGAATTCCCATGAGATATTTAACGTCGACAAGGCTGTTAACATGTACAATGTCAAGAAGGACAAGAAGCGAAAGAACAAGCCGGGGATGTCCTCAAGCACGTTAAAACCGAAGAAGAACATCCAGAAGAAGCCATTAAAGAAGGGATCTTCATCGAAAGGAAAGGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015711 GO:0015748 GO:0015780 GO:0015833 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051503 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055085 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0090305 GO:0090480 GO:0090501 GO:0090502 GO:1901264 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRS1

Protein Analysis

369

Amino Acids

41.18

Weight (kDa)

10.03

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRS1	PF04939	50 - 212	2.1e-53	Ribosome biogenesis regulatory protein (RRS1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37990
fragaria_vesca	FvH4_1g03500
malus_domestica	MD02G1034000.v1.1 MD15G1174800.v1.1
prunus_persica	Prupe.7G241100_v2.0.a1
pyrus_communis	pycom02g02780 pycom15g15630
rosa_chinensis	RchiOBHm_Chr2g0088711
rosa_laevigata	RLG00000015978 RLG00000034377
rosa_multiflora	Rmu_sc0006835.1_g000005 Rmu_sc0006835.1_g000006 Rmu_sc0015442.1_g000017
rosa_roxburghii	Rroxscaffold_2G00152380
rosa_rugosa	Rorug01G0486300 Rorug01G0486400
rosa_samantha	Rh2AG041600 Rh2BG040300 Rh2CG041000 Rh2DG040700 Rh5BG314200
rosa_wichuraiana	Rw2G003280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	960
AccII	CGCG	3 cut(s)	17, 97, 337
AciI	CCGC	6 cut(s)	15, 137, 335, 774, 786, 847
AclWI	GGATC	3 cut(s)	557, 570, 1087
AcoI	YGGCCR	1 cut(s)	780
AcsI	RAATTY	1 cut(s)	937
AcuI	CTGAAG	2 cut(s)	66, 78
AfaI	GTAC	3 cut(s)	522, 915, 980
AfiI	CCNNNNNNNGG	2 cut(s)	216, 704
AflIII	ACRYGT	1 cut(s)	975
AgsI	TTSAA	7 cut(s)	91, 152, 266, 289, 300, 605, 637
AjnI	CCWGG	3 cut(s)	215, 553, 811
Alw26I	GTCTC	2 cut(s)	125, 435
AlwI	GGATC	3 cut(s)	557, 570, 1087
AoxI	GGCC	2 cut(s)	174, 780
ApeKI	GCWGC	7 cut(s)	101, 122, 139, 142, 644, 683, 767
ApoI	RAATTY	1 cut(s)	937
AspS9I	GGNCC	2 cut(s)	252, 317
AsuC2I	CCSGG	1 cut(s)	1017
AsuHPI	GGTGA	1 cut(s)	827
AsuNHI	GCTAGC	1 cut(s)	679
AvaII	GGWCC	2 cut(s)	252, 317
BamHI	GGATCC	1 cut(s)	562
BbvI	GCAGC	7 cut(s)	88, 134, 151, 154, 631, 670, 779
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	795
BciT130I	CCWGG	3 cut(s)	217, 555, 813
BcnI	CCSGG	1 cut(s)	1017
BcoDI	GTCTC	2 cut(s)	125, 435
BfaI	CTAG	2 cut(s)	357, 680
BfmI	CTRYAG	1 cut(s)	717
BisI	GCNGC	9 cut(s)	15, 102, 123, 140, 143, 335, 645, 684, 768
BlsI	GCNGC	9 cut(s)	16, 103, 124, 141, 144, 336, 646, 685, 769
BmcAI	AGTACT	1 cut(s)	915
Bme1390I	CCNGG	4 cut(s)	217, 555, 813, 1017
Bme18I	GGWCC	2 cut(s)	252, 317
BmgT120I	GGNCC	2 cut(s)	252, 317
BmiI	GGNNCC	4 cut(s)	253, 319, 564, 709
BmrFI	CCNGG	4 cut(s)	217, 555, 813, 1017
BmrI	ACTGGG	2 cut(s)	706, 755
BmsI	GCATC	1 cut(s)	376
BmtI	GCTAGC	1 cut(s)	683
BmuI	ACTGGG	2 cut(s)	706, 755
BpmI	CTGGAG	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	1012
BpuMI	CCSGG	1 cut(s)	1017
BsaBI	GATNNNNATC	1 cut(s)	1084
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	3 cut(s)	216, 554, 1016
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 704
Bse118I	RCCGGY	1 cut(s)	859
Bse1I	ACTGG	3 cut(s)	374, 712, 750
Bse3DI	GCAATG	1 cut(s)	132
Bse8I	GATNNNNATC	1 cut(s)	1084
BseBI	CCWGG	3 cut(s)	217, 555, 813
BseDI	CCNNGG	3 cut(s)	216, 554, 1016
BseGI	GGATG	3 cut(s)	204, 1026, 1053
BseJI	GATNNNNATC	1 cut(s)	1084
BseLI	CCNNNNNNNGG	2 cut(s)	216, 704
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	3 cut(s)	374, 712, 750
BseRI	GAGGAG	1 cut(s)	202
BseXI	GCAGC	7 cut(s)	88, 134, 151, 154, 631, 670, 779
BsgI	GTGCAG	1 cut(s)	347
Bsh1236I	CGCG	3 cut(s)	17, 97, 337
BshFI	GGCC	2 cut(s)	176, 782
BsiSI	CCGG	2 cut(s)	860, 1016
BslFI	GGGAC	3 cut(s)	265, 303, 324
BslI	CCNNNNNNNGG	2 cut(s)	216, 704
BsmAI	GTCTC	2 cut(s)	125, 435
BsmFI	GGGAC	3 cut(s)	265, 303, 324
BsnI	GGCC	2 cut(s)	176, 782
Bso31I	GGTCTC	1 cut(s)	125
Bsp1407I	TGTACA	1 cut(s)	978
Bsp143I	GATC	4 cut(s)	157, 496, 562, 1079
Bsp68I	TCGCGA	1 cut(s)	97
BspACI	CCGC	6 cut(s)	15, 137, 335, 774, 786, 847
BspANI	GGCC	2 cut(s)	176, 782
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	3 cut(s)	17, 97, 337
BspLI	GGNNCC	4 cut(s)	253, 319, 564, 709
BspOI	GCTAGC	1 cut(s)	683
BspPI	GGATC	3 cut(s)	557, 570, 1087
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	859
BsrGI	TGTACA	1 cut(s)	978
BsrI	ACTGG	3 cut(s)	374, 712, 750
BssAI	RCCGGY	1 cut(s)	859
BssECI	CCNNGG	3 cut(s)	216, 554, 1016
BssMI	GATC	4 cut(s)	157, 496, 562, 1079
Bst2UI	CCWGG	3 cut(s)	217, 555, 813
Bst4CI	ACNGT	3 cut(s)	317, 434, 693
BstAUI	TGTACA	1 cut(s)	978
BstC8I	GCNNGC	4 cut(s)	99, 642, 681, 784
BstDEI	CTNAG	2 cut(s)	303, 933
BstENI	CCTNNNNNAGG	1 cut(s)	214
BstF5I	GGATG	3 cut(s)	204, 1026, 1053
BstFNI	CGCG	3 cut(s)	17, 97, 337
BstKTI	GATC	4 cut(s)	160, 499, 565, 1082
BstMAI	GTCTC	2 cut(s)	125, 435
BstMBI	GATC	4 cut(s)	157, 496, 562, 1079
BstMWI	GCNNNNNNNGC	3 cut(s)	334, 764, 773
BstNI	CCWGG	3 cut(s)	217, 555, 813
BstNSI	RCATGY	1 cut(s)	979
BstSCI	CCNGG	4 cut(s)	215, 553, 811, 1015
BstSFI	CTRYAG	1 cut(s)	717
BstUI	CGCG	3 cut(s)	17, 97, 337
BstV1I	GCAGC	7 cut(s)	88, 134, 151, 154, 631, 670, 779
BstX2I	RGATCY	2 cut(s)	562, 1079
BstXI	CCANNNNNNTGG	1 cut(s)	396
BstYI	RGATCY	2 cut(s)	562, 1079
BsuRI	GGCC	2 cut(s)	176, 782
BtsCI	GGATG	3 cut(s)	204, 1026, 1053
BtsIMutI	CAGTG	1 cut(s)	381
BtuMI	TCGCGA	1 cut(s)	97
Cac8I	GCNNGC	4 cut(s)	99, 642, 681, 784
Cfr10I	RCCGGY	1 cut(s)	859
Cfr13I	GGNCC	2 cut(s)	252, 317
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	3 cut(s)	521, 914, 979
CviAII	CATG	4 cut(s)	172, 671, 944, 976
CviQI	GTAC	3 cut(s)	521, 914, 979
DdeI	CTNAG	2 cut(s)	303, 933
DpnI	GATC	4 cut(s)	159, 498, 564, 1081
DpnII	GATC	4 cut(s)	157, 496, 562, 1079
EaeI	YGGCCR	1 cut(s)	780
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	252, 317
Eco57I	CTGAAG	2 cut(s)	66, 78
EcoNI	CCTNNNNNAGG	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	937
EcoRII	CCWGG	3 cut(s)	215, 553, 811
FaeI	CATG	4 cut(s)	175, 674, 947, 979
FaqI	GGGAC	3 cut(s)	265, 303, 324
FatI	CATG	4 cut(s)	171, 670, 943, 975
FauI	CCCGC	1 cut(s)	144
FauNDI	CATATG	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	960
Fnu4HI	GCNGC	9 cut(s)	15, 102, 123, 140, 143, 335, 645, 684, 768
FokI	GGATG	3 cut(s)	191, 1033, 1040
Fsp4HI	GCNGC	9 cut(s)	15, 102, 123, 140, 143, 335, 645, 684, 768
FspBI	CTAG	2 cut(s)	357, 680
GluI	GCNGC	9 cut(s)	15, 102, 123, 140, 143, 335, 645, 684, 768
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	2 cut(s)	176, 782
HapII	CCGG	2 cut(s)	860, 1016
HgaI	GACGC	1 cut(s)	326
Hin1II	CATG	4 cut(s)	175, 674, 947, 979
HincII	GTYRAC	2 cut(s)	961, 973
HindII	GTYRAC	2 cut(s)	961, 973
HinfI	GANTC	1 cut(s)	148
HpaI	GTTAAC	1 cut(s)	973
HpaII	CCGG	2 cut(s)	860, 1016
HphI	GGTGA	1 cut(s)	827
Hpy166II	GTNNAC	3 cut(s)	521, 961, 973
Hpy188III	TCNNGA	5 cut(s)	96, 341, 427, 988, 1057
Hpy8I	GTNNAC	3 cut(s)	521, 961, 973
Hpy99I	CGWCG	2 cut(s)	486, 962
HpyAV	CCTTC	8 cut(s)	187, 226, 306, 532, 863, 889, 985, 1069
HpyCH4III	ACNGT	3 cut(s)	317, 434, 693
HpyCH4IV	ACGT	3 cut(s)	481, 957, 1034
HpyCH4V	TGCA	5 cut(s)	104, 328, 452, 503, 628
HpyF10VI	GCNNNNNNNGC	3 cut(s)	334, 764, 773
HpyF3I	CTNAG	2 cut(s)	303, 933
HpySE526I	ACGT	3 cut(s)	481, 957, 1034
Hsp92II	CATG	4 cut(s)	175, 674, 947, 979
KspAI	GTTAAC	1 cut(s)	973
Kzo9I	GATC	4 cut(s)	157, 496, 562, 1079
LmnI	GCTCC	1 cut(s)	898
Lsp1109I	GCAGC	7 cut(s)	88, 134, 151, 154, 631, 670, 779
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	2 cut(s)	357, 680
MaeII	ACGT	3 cut(s)	481, 957, 1034
MalI	GATC	4 cut(s)	159, 498, 564, 1081
MboI	GATC	4 cut(s)	157, 496, 562, 1079
MboII	GAAGA	6 cut(s)	72, 604, 1057, 1060, 1072, 1074
MflI	RGATCY	2 cut(s)	562, 1079
MluCI	AATT	3 cut(s)	224, 806, 937
MmeI	TCCRAC	1 cut(s)	413
MseI	TTAA	4 cut(s)	954, 972, 1037, 1070
MspA1I	CMGCKG	1 cut(s)	786
MspI	CCGG	2 cut(s)	860, 1016
MspR9I	CCNGG	4 cut(s)	217, 555, 813, 1017
MvaI	CCWGG	3 cut(s)	217, 555, 813
MvnI	CGCG	3 cut(s)	17, 97, 337
MwoI	GCNNNNNNNGC	3 cut(s)	334, 764, 773
NciI	CCSGG	1 cut(s)	1017
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	4 cut(s)	157, 496, 562, 1079
NheI	GCTAGC	1 cut(s)	679
NlaIII	CATG	4 cut(s)	175, 674, 947, 979
NlaIV	GGNNCC	4 cut(s)	253, 319, 564, 709
NruI	TCGCGA	1 cut(s)	97
NspI	RCATGY	1 cut(s)	979
PciI	ACATGT	1 cut(s)	975
PcsI	WCGNNNNNNNCGW	1 cut(s)	1040
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	9 cut(s)	16, 103, 124, 141, 144, 336, 646, 685, 769
PscI	ACATGT	1 cut(s)	975
Psp6I	CCWGG	3 cut(s)	215, 553, 811
PspGI	CCWGG	3 cut(s)	215, 553, 811
PspN4I	GGNNCC	4 cut(s)	253, 319, 564, 709
PspPI	GGNCC	2 cut(s)	252, 317
PsuI	RGATCY	2 cut(s)	562, 1079
RruI	TCGCGA	1 cut(s)	97
RsaI	GTAC	3 cut(s)	522, 915, 980
RsaNI	GTAC	3 cut(s)	521, 914, 979
SalI	GTCGAC	1 cut(s)	959
SaqAI	TTAA	4 cut(s)	954, 972, 1037, 1070
SatI	GCNGC	9 cut(s)	15, 102, 123, 140, 143, 335, 645, 684, 768
Sau3AI	GATC	4 cut(s)	157, 496, 562, 1079
Sau96I	GGNCC	2 cut(s)	252, 317
ScaI	AGTACT	1 cut(s)	915
ScrFI	CCNGG	4 cut(s)	217, 555, 813, 1017
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	717
SinI	GGWCC	2 cut(s)	252, 317
SmlI	CTYRAG	1 cut(s)	1027
SmoI	CTYRAG	1 cut(s)	1027
Sse9I	AATT	3 cut(s)	224, 806, 937
SsiI	CCGC	6 cut(s)	15, 137, 335, 774, 786, 847
SspMI	CTAG	2 cut(s)	357, 680
StyD4I	CCNGG	4 cut(s)	215, 553, 811, 1015
TaaI	ACNGT	3 cut(s)	317, 434, 693
TaiI	ACGT	3 cut(s)	484, 960, 1037
TaqI	TCGA	4 cut(s)	156, 180, 960, 1088
TaqII	GACCGA	1 cut(s)	269
TasI	AATT	3 cut(s)	224, 806, 937
TatI	WGTACW	2 cut(s)	913, 978
TauI	GCSGC	2 cut(s)	17, 337
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	4 cut(s)	954, 972, 1037, 1070
Tru9I	TTAA	4 cut(s)	954, 972, 1037, 1070
TscAI	CASTG	1 cut(s)	381
TseI	GCWGC	7 cut(s)	101, 122, 139, 142, 644, 683, 767
TspDTI	ATGAA	2 cut(s)	756, 1074
TspRI	CASTG	1 cut(s)	381
VpaK11BI	GGWCC	2 cut(s)	252, 317
XagI	CCTNNNNNAGG	1 cut(s)	214
XapI	RAATTY	1 cut(s)	937
XceI	RCATGY	1 cut(s)	979
XcmI	CCANNNNNNNNNTGG	1 cut(s)	471
XmiI	GTMKAC	1 cut(s)	960
XspI	CTAG	2 cut(s)	357, 680
ZrmI	AGTACT	1 cut(s)	915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.