Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006686

Physical Location & Seq

Genomic Coordinates Forward (+)

12762735 .. 12765031

Gene Structure 2297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17980.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGCGACGAGGTCGATACTATTTTATCTTACTGCTTTCAGAAACAGCCCAAACAGCCCCTCACTTTGCATTGCTTCAGTCTCGTAGTCTTTCACTCTTCAGCTCCGTTCAGCTTACAGAGGCGCACGTTAACCATGCTTAATCTACACACCCGCTCACCTGTTCTTCAACCTCCCTGCACTCCCTTATCCATGTTTTCCCGCAACACAAACCGCTTCCCGCCATTTAGTACCGTTGGACTTCACTTTCAGGGCTTTTCTGCACAGCCGGGGGAGCACGGGACCTCCGTATTCGTTGCAAAAGCGGGTCGGGGCCTAAGGCTGAAGACCCAGAAAGCGAGTGACGGAGAAGAAGATAAAGACGGCGGCTTTGTGGATATAGATTTCGAAGTTGCAGCTGAATCCGAAGACGGGTTTCCGGGTCGGACCGGCTTCGGAGGGAGAGAGGAAGAAAAGGACTTTGATCGGGATCCCGAGTTTGCTGAAATTATGGGTGCTTGTCTTGATGACCCAGAAAAAGCTAGGTCCAAGATGGAAGATAGGTTGAGGAAGAAAAGGAACAAGATTTTGCAGACAAAGTCTGGTTCAGGGCTGCCCATGAATGTGACATTCAACAACTTTGGTTTCTCAAACTCGTATATATGGTTTGAATTCTACAACACTCCATTGGAGCAAGATGTTACCTTAATCTCTGATACCATTCGATCATGGCACATCATTGGGCGCATGGGTGGATGCAATTCCATGAATATGCAGTTGTCACAGTCTCCTTTCGATAAACGACCAAGTTATGATGCAATTCAGGGAGCAAATGTGACCCCAACTACTTTTTACAATATCGGAGATCTTGAGGTTCAGGACAACTTAGCACGTGTTTGGGTGGATATCGGCACCAGTGAACCATTGCTACTGGATGTTCTAATAAACGCATTGACTCAGATAAGCTCCGACTTTGTCGGAATCAAGCAAGTGGTGTTTGGTGGATCTGAATTTGAAAACTGGAAGGAGAACATGACATCAGAGGATGCAGGTTATAGCATCCACAACATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3531

Protein Analysis

351

Amino Acids

39.19

Weight (kDa)

5.11

Isoelectric Point (pI)

54.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29400
fragaria_vesca	FvH4_1g06800 FvH4_1g06800 FvH4_1g06800 FvH4_1g06800
malus_domestica	MD15G1202400.v1.1
prunus_persica	Prupe.7G214800_v2.0.a1
pyrus_communis	pycom15g17980
rosa_chinensis	RchiOBHm_Chr2g0091901 RchiOBHm_Chr2g0092571
rosa_laevigata	RLG00000016324
rosa_multiflora	Rmu_sc0004296.1_g000003 Rmu_sc0010910.1_g000006
rosa_roxburghii	Rroxscaffold_2G00147660 Rroxscaffold_2G00148960
rosa_rugosa	Rorug02G0027600 Rorug02G0027600
rosa_samantha	Rh2AG067100 Rh2AG073500 Rh2BG066100 Rh2BG074400 Rh2CG067500 Rh2CG075500 Rh2DG065800 Rh2DG072600
rosa_wichuraiana	Rw2G005940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1019
AccB1I	GGYRCC	1 cut(s)	890
AccBSI	CCGCTC	1 cut(s)	156
AciI	CCGC	6 cut(s)	154, 202, 214, 221, 305, 366
AclWI	GGATC	3 cut(s)	464, 477, 991
AcsI	RAATTY	2 cut(s)	650, 989
AcuI	CTGAAG	3 cut(s)	61, 84, 344
AcvI	CACGTG	1 cut(s)	872
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	411
AflIII	ACRYGT	1 cut(s)	871
AgsI	TTSAA	4 cut(s)	170, 613, 650, 995
AluBI	AGCT	5 cut(s)	104, 114, 398, 521, 945
AluI	AGCT	5 cut(s)	104, 114, 398, 521, 945
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	2 cut(s)	86, 771
AlwI	GGATC	3 cut(s)	464, 477, 991
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	395, 592
ApoI	RAATTY	2 cut(s)	650, 989
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
AspLEI	GCGC	2 cut(s)	126, 726
AspS9I	GGNCC	4 cut(s)	282, 313, 426, 525
AsuC2I	CCSGG	2 cut(s)	270, 420
AsuHPI	GGTGA	1 cut(s)	150
AsuII	TTCGAA	1 cut(s)	387
AvaI	CYCGRG	1 cut(s)	473
AvaII	GGWCC	3 cut(s)	282, 426, 525
AxyI	CCTNAGG	1 cut(s)	317
BamHI	GGATCC	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	890
BbrPI	CACGTG	1 cut(s)	872
BbsI	GAAGAC	2 cut(s)	332, 414
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	407, 579
BccI	CCATC	1 cut(s)	526
BceAI	ACGGC	1 cut(s)	379
BcnI	CCSGG	2 cut(s)	270, 420
BcoDI	GTCTC	2 cut(s)	86, 771
BfaI	CTAG	1 cut(s)	522
BfuAI	ACCTGC	1 cut(s)	1019
BglII	AGATCT	1 cut(s)	844
BisI	GCNGC	3 cut(s)	367, 396, 593
BlsI	GCNGC	3 cut(s)	368, 397, 594
Bme1390I	CCNGG	2 cut(s)	270, 420
Bme18I	GGWCC	3 cut(s)	282, 426, 525
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	4 cut(s)	282, 313, 426, 525
BmiI	GGNNCC	4 cut(s)	283, 314, 471, 892
BmrFI	CCNGG	2 cut(s)	270, 420
BmsI	GCATC	4 cut(s)	725, 784, 1015, 1047
BpiI	GAAGAC	2 cut(s)	332, 414
Bpu14I	TTCGAA	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	869
BpuMI	CCSGG	2 cut(s)	270, 420
BsaAI	YACGTR	1 cut(s)	872
BsaBI	GATNNNNATC	1 cut(s)	468
BsaJI	CCNNGG	1 cut(s)	269
BsaXI	ACNNNNNCTCC	4 cut(s)	269, 299, 798, 828
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	3 cut(s)	894, 915, 1004
Bse21I	CCTNAGG	1 cut(s)	317
Bse3DI	GCAATG	2 cut(s)	70, 902
Bse8I	GATNNNNATC	1 cut(s)	468
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	4 cut(s)	740, 919, 1030, 1038
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseMI	GCAATG	2 cut(s)	70, 902
BseMII	CTCAG	1 cut(s)	950
BseNI	ACTGG	3 cut(s)	894, 915, 1004
BseXI	GCAGC	2 cut(s)	407, 579
BsgI	GTGCAG	2 cut(s)	163, 246
BshFI	GGCC	1 cut(s)	315
BshNI	GGYRCC	1 cut(s)	890
BsiHKAI	GWGCWC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	3 cut(s)	269, 419, 429
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmAI	GTCTC	2 cut(s)	86, 771
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	315
BsoBI	CYCGRG	1 cut(s)	473
Bsp119I	TTCGAA	1 cut(s)	387
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	5 cut(s)	463, 469, 704, 844, 983
BspACI	CCGC	6 cut(s)	154, 202, 214, 221, 305, 366
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	949
BspLI	GGNNCC	4 cut(s)	283, 314, 471, 892
BspMI	ACCTGC	1 cut(s)	1019
BspPI	GGATC	3 cut(s)	464, 477, 991
BspT104I	TTCGAA	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	890
BsrBI	CCGCTC	1 cut(s)	156
BsrDI	GCAATG	2 cut(s)	70, 902
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	3 cut(s)	894, 915, 1004
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	5 cut(s)	463, 469, 704, 844, 983
Bst4CI	ACNGT	2 cut(s)	235, 765
Bst6I	CTCTTC	1 cut(s)	103
BstBAI	YACGTR	1 cut(s)	872
BstBI	TTCGAA	1 cut(s)	387
BstDEI	CTNAG	3 cut(s)	317, 865, 936
BstF5I	GGATG	4 cut(s)	740, 919, 1030, 1038
BstHHI	GCGC	2 cut(s)	126, 726
BstKTI	GATC	5 cut(s)	466, 472, 707, 847, 986
BstMAI	GTCTC	2 cut(s)	86, 771
BstMBI	GATC	5 cut(s)	463, 469, 704, 844, 983
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 274
BstSCI	CCNGG	2 cut(s)	268, 418
BstV1I	GCAGC	2 cut(s)	407, 579
BstV2I	GAAGAC	2 cut(s)	332, 414
BstX2I	RGATCY	3 cut(s)	469, 844, 983
BstYI	RGATCY	3 cut(s)	469, 844, 983
Bsu36I	CCTNAGG	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	315
BtsCI	GGATG	4 cut(s)	740, 919, 1030, 1038
BtsIMutI	CAGTG	1 cut(s)	901
BveI	ACCTGC	1 cut(s)	1019
CfoI	GCGC	2 cut(s)	126, 726
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	4 cut(s)	282, 313, 426, 525
CpoI	CGGWCCG	1 cut(s)	426
Csp6I	GTAC	1 cut(s)	231
CspI	CGGWCCG	1 cut(s)	426
CviAII	CATG	7 cut(s)	136, 193, 598, 708, 727, 745, 1012
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	3 cut(s)	317, 865, 936
DpnI	GATC	5 cut(s)	465, 471, 706, 846, 985
DpnII	GATC	5 cut(s)	463, 469, 704, 844, 983
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco32I	GATATC	1 cut(s)	886
Eco47I	GGWCC	3 cut(s)	282, 426, 525
Eco57I	CTGAAG	3 cut(s)	61, 84, 344
Eco72I	CACGTG	1 cut(s)	872
Eco81I	CCTNAGG	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	473
EcoO109I	RGGNCCY	2 cut(s)	282, 313
EcoRI	GAATTC	1 cut(s)	650
EcoRV	GATATC	1 cut(s)	886
FaeI	CATG	7 cut(s)	139, 196, 601, 711, 730, 748, 1015
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	7 cut(s)	135, 192, 597, 707, 726, 744, 1011
FauI	CCCGC	4 cut(s)	161, 209, 228, 298
Fnu4HI	GCNGC	3 cut(s)	367, 396, 593
FokI	GGATG	4 cut(s)	747, 926, 1025, 1037
Fsp4HI	GCNGC	3 cut(s)	367, 396, 593
FspBI	CTAG	1 cut(s)	522
GlaI	GCGC	2 cut(s)	125, 725
GluI	GCNGC	3 cut(s)	367, 396, 593
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	3 cut(s)	269, 419, 429
HhaI	GCGC	2 cut(s)	126, 726
Hin1II	CATG	7 cut(s)	139, 196, 601, 711, 730, 748, 1015
Hin6I	GCGC	2 cut(s)	124, 724
HinP1I	GCGC	2 cut(s)	124, 724
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	3 cut(s)	401, 934, 960
HpaI	GTTAAC	1 cut(s)	132
HpaII	CCGG	3 cut(s)	269, 419, 429
HphI	GGTGA	1 cut(s)	150
Hpy166II	GTNNAC	2 cut(s)	132, 899
Hpy188III	TCNNGA	5 cut(s)	467, 473, 503, 848, 857
Hpy8I	GTNNAC	2 cut(s)	132, 899
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	997
HpyCH4III	ACNGT	2 cut(s)	235, 765
HpyCH4IV	ACGT	2 cut(s)	128, 871
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 274
HpyF3I	CTNAG	3 cut(s)	317, 865, 936
HpySE526I	ACGT	2 cut(s)	128, 871
Hsp92II	CATG	7 cut(s)	139, 196, 601, 711, 730, 748, 1015
HspAI	GCGC	2 cut(s)	124, 724
KspAI	GTTAAC	1 cut(s)	132
Kzo9I	GATC	5 cut(s)	463, 469, 704, 844, 983
LmnI	GCTCC	5 cut(s)	109, 274, 670, 806, 950
Lsp1109I	GCAGC	2 cut(s)	407, 579
LweI	GCATC	4 cut(s)	725, 784, 1015, 1047
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	2 cut(s)	128, 871
MaeIII	GTNAC	5 cut(s)	341, 604, 679, 759, 814
MalI	GATC	5 cut(s)	465, 471, 706, 846, 985
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	5 cut(s)	463, 469, 704, 844, 983
MboII	GAAGA	9 cut(s)	90, 158, 337, 362, 365, 419, 461, 548, 562
MflI	RGATCY	3 cut(s)	469, 844, 983
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	5 cut(s)	486, 650, 739, 798, 989
MlyI	GAGTC	1 cut(s)	928
MmeI	TCCRAC	4 cut(s)	217, 404, 937, 972
MseI	TTAA	3 cut(s)	131, 141, 686
MslI	CAYNNNNRTG	2 cut(s)	602, 749
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	3 cut(s)	269, 419, 429
MspR9I	CCNGG	2 cut(s)	270, 420
MwoI	GCNNNNNNNGC	2 cut(s)	55, 274
NciI	CCSGG	2 cut(s)	270, 420
NdeII	GATC	5 cut(s)	463, 469, 704, 844, 983
NlaIII	CATG	7 cut(s)	139, 196, 601, 711, 730, 748, 1015
NlaIV	GGNNCC	4 cut(s)	283, 314, 471, 892
NmuCI	GTSAC	4 cut(s)	341, 604, 759, 814
NspV	TTCGAA	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	401, 960
PflFI	GACNNNGTC	3 cut(s)	11, 577, 953
PkrI	GCNGC	3 cut(s)	368, 397, 594
PleI	GAGTC	1 cut(s)	928
PmaCI	CACGTG	1 cut(s)	872
PmlI	CACGTG	1 cut(s)	872
PpsI	GAGTC	1 cut(s)	928
Ppu21I	YACGTR	1 cut(s)	872
PpuMI	RGGWCCY	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	282
PspCI	CACGTG	1 cut(s)	872
PspN4I	GGNNCC	4 cut(s)	283, 314, 471, 892
PspPI	GGNCC	4 cut(s)	282, 313, 426, 525
PspPPI	RGGWCCY	1 cut(s)	282
PsrI	GAACNNNNNNTAC	2 cut(s)	891, 923
PsuI	RGATCY	3 cut(s)	469, 844, 983
PsyI	GACNNNGTC	3 cut(s)	11, 577, 953
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
RseI	CAYNNNNRTG	2 cut(s)	602, 749
Rsr2I	CGGWCCG	1 cut(s)	426
RsrII	CGGWCCG	1 cut(s)	426
SaqAI	TTAA	3 cut(s)	131, 141, 686
SatI	GCNGC	3 cut(s)	367, 396, 593
Sau3AI	GATC	5 cut(s)	463, 469, 704, 844, 983
Sau96I	GGNCC	4 cut(s)	282, 313, 426, 525
SchI	GAGTC	1 cut(s)	928
ScrFI	CCNGG	2 cut(s)	270, 420
SduI	GDGCHC	1 cut(s)	279
SfaNI	GCATC	4 cut(s)	725, 784, 1015, 1047
SfuI	TTCGAA	1 cut(s)	387
SinI	GGWCC	3 cut(s)	282, 426, 525
SmiMI	CAYNNNNRTG	2 cut(s)	602, 749
SmlI	CTYRAG	1 cut(s)	848
SmoI	CTYRAG	1 cut(s)	848
Sse9I	AATT	5 cut(s)	486, 650, 739, 798, 989
SsiI	CCGC	6 cut(s)	154, 202, 214, 221, 305, 366
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	2 cut(s)	268, 418
TaaI	ACNGT	2 cut(s)	235, 765
TaiI	ACGT	2 cut(s)	131, 874
TaqI	TCGA	4 cut(s)	15, 387, 703, 774
TasI	AATT	5 cut(s)	486, 650, 739, 798, 989
TauI	GCSGC	1 cut(s)	369
TfiI	GAWTC	2 cut(s)	401, 960
Tru1I	TTAA	3 cut(s)	131, 141, 686
Tru9I	TTAA	3 cut(s)	131, 141, 686
TscAI	CASTG	1 cut(s)	901
TseFI	GTSAC	4 cut(s)	341, 604, 759, 814
TseI	GCWGC	2 cut(s)	395, 592
Tsp45I	GTSAC	4 cut(s)	341, 604, 759, 814
TspDTI	ATGAA	2 cut(s)	614, 761
TspGWI	ACGGA	3 cut(s)	96, 277, 360
TspRI	CASTG	1 cut(s)	901
Tth111I	GACNNNGTC	3 cut(s)	11, 577, 953
VpaK11BI	GGWCC	3 cut(s)	282, 426, 525
XapI	RAATTY	2 cut(s)	650, 989
XspI	CTAG	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.