Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004296.1

Orthogroup ID

OG0006686

Physical Location & Seq

Genomic Coordinates Reverse (-)

7905 .. 9505

Gene Structure 1601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004296.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atggctgtcttacacagctgcgcgcctcttctgcaaagtccgagcattcccttatccttgttttcccgccagaaacactgctcgccaccgctttgggccgtcggaggtccatttcggagctgttttggtcagcccaagacaagtgtattggtggctagagcgggtcggggtctaaagttggggacgacccagaaagagagtggaggagaagatggaggctttggtgatgaaggtgaagatgggttttcgggtcggagtgggtttgtggggagaggagaagggaaggagtttgatcgagaccctgagtttgctgaaataatgggtgcttgtcttgatgacccacaaaaggctaggtccaagatggaggagaggttgaggaagaaaaggaacaaaatattgcatacaaaatcggggtcaggagaacccatgagagtggtattcaatgactttggtttctcaaattcatacatatggttcgagttctacaacattccattggaacaagatgtttccttaatctcggatactattcgatcgtggcacattattggacgcttgggtggatgcaattccatgaatatgcaattgtcacaatcccctttggataaacgaccaagttatgatcccattcagggagcaaatgtgacaccaactacattttacaatattggagatcttgagattcaagacaacttgggacgtgtttggtatgtagctcatcttgaattgtggaactgttataatccttcacaatttcaggctttatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3531

Protein Analysis

256

Amino Acids

28.48

Weight (kDa)

6.53

Isoelectric Point (pI)

62.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29400
fragaria_vesca	FvH4_1g06800 FvH4_1g06800 FvH4_1g06800 FvH4_1g06800
malus_domestica	MD15G1202400.v1.1
prunus_persica	Prupe.7G214800_v2.0.a1
pyrus_communis	pycom15g17980
rosa_chinensis	RchiOBHm_Chr2g0091901 RchiOBHm_Chr2g0092571
rosa_laevigata	RLG00000016324
rosa_multiflora	Rmu_sc0004296.1_g000003 Rmu_sc0010910.1_g000006
rosa_roxburghii	Rroxscaffold_2G00147660 Rroxscaffold_2G00148960
rosa_rugosa	Rorug02G0027600 Rorug02G0027600
rosa_samantha	Rh2AG067100 Rh2AG073500 Rh2BG066100 Rh2BG074400 Rh2CG067500 Rh2CG075500 Rh2DG065800 Rh2DG072600
rosa_wichuraiana	Rw2G005940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	741
AccBSI	CCGCTC	1 cut(s)	161
AccII	CGCG	1 cut(s)	23
AciI	CCGC	3 cut(s)	67, 89, 161
AclWI	GGATC	1 cut(s)	617
AcsI	RAATTY	1 cut(s)	460
AfiI	CCNNNNNNNGG	2 cut(s)	346, 632
AflIII	ACRYGT	1 cut(s)	700
AgsI	TTSAA	3 cut(s)	442, 686, 725
AjiI	CACGTC	1 cut(s)	701
AluBI	AGCT	3 cut(s)	18, 120, 716
AluI	AGCT	3 cut(s)	18, 120, 716
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	617
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	460
ArsI	GACNNNNNNTTYG	4 cut(s)	290, 322, 398, 430
AspLEI	GCGC	2 cut(s)	23, 25
AspS9I	GGNCC	3 cut(s)	96, 107, 354
AsuHPI	GGTGA	2 cut(s)	236, 245
AvaII	GGWCC	2 cut(s)	107, 354
BbvI	GCAGC	1 cut(s)	5
BccI	CCATC	3 cut(s)	206, 233, 355
BceAI	ACGGC	1 cut(s)	83
BciVI	GTATCC	1 cut(s)	517
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	2 cut(s)	156, 351
BfuI	GTATCC	1 cut(s)	517
BglII	AGATCT	1 cut(s)	673
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme18I	GGWCC	2 cut(s)	107, 354
BmgBI	CACGTC	1 cut(s)	701
BmgT120I	GGNCC	3 cut(s)	96, 107, 354
BmsI	GCATC	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	698
BsaI	GGTCTC	1 cut(s)	291
BsaXI	ACNNNNNCTCC	4 cut(s)	356, 386, 627, 657
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 632
BseGI	GGATG	1 cut(s)	569
BseLI	CCNNNNNNNGG	2 cut(s)	346, 632
BseMII	CTCAG	1 cut(s)	294
BsePI	GCGCGC	1 cut(s)	21
BseRI	GAGGAG	3 cut(s)	219, 288, 380
BseXI	GCAGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	23
Bsh1285I	CGRYCG	1 cut(s)	536
BshFI	GGCC	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	536
BslFI	GGGAC	2 cut(s)	196, 711
BslI	CCNNNNNNNGG	2 cut(s)	346, 632
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	2 cut(s)	196, 711
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	291
Bsp143I	GATC	4 cut(s)	292, 533, 622, 673
BspACI	CCGC	3 cut(s)	67, 89, 161
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	23
BspPI	GGATC	1 cut(s)	617
BspTNI	GGTCTC	1 cut(s)	291
BsrBI	CCGCTC	1 cut(s)	161
BssHII	GCGCGC	1 cut(s)	21
BssMI	GATC	4 cut(s)	292, 533, 622, 673
Bst4CI	ACNGT	1 cut(s)	737
Bst6I	CTCTTC	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	23, 83
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	569
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	2 cut(s)	23, 25
BstKTI	GATC	4 cut(s)	295, 536, 625, 676
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	4 cut(s)	292, 533, 622, 673
BstMCI	CGRYCG	1 cut(s)	536
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	5
BstX2I	RGATCY	1 cut(s)	673
BstXI	CCANNNNNNTGG	2 cut(s)	93, 433
BstYI	RGATCY	1 cut(s)	673
BsuI	GTATCC	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	701
BtsCI	GGATG	1 cut(s)	569
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	23, 83
CfoI	GCGC	2 cut(s)	23, 25
Cfr13I	GGNCC	3 cut(s)	96, 107, 354
CseI	GACGC	1 cut(s)	561
CviAII	CATG	2 cut(s)	427, 574
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	4 cut(s)	294, 535, 624, 675
DpnII	GATC	4 cut(s)	292, 533, 622, 673
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	291
Eco47I	GGWCC	2 cut(s)	107, 354
FaeI	CATG	2 cut(s)	430, 577
FaqI	GGGAC	2 cut(s)	196, 711
FatI	CATG	2 cut(s)	426, 573
FauI	CCCGC	2 cut(s)	74, 154
FauNDI	CATATG	1 cut(s)	470
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	1 cut(s)	576
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	2 cut(s)	156, 351
GlaI	GCGC	2 cut(s)	22, 24
GluI	GCNGC	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	98
HgaI	GACGC	1 cut(s)	561
HhaI	GCGC	2 cut(s)	23, 25
Hin1II	CATG	2 cut(s)	430, 577
Hin6I	GCGC	2 cut(s)	21, 23
HinP1I	GCGC	2 cut(s)	21, 23
HinfI	GANTC	1 cut(s)	682
HphI	GGTGA	2 cut(s)	236, 245
Hpy188I	TCNGA	5 cut(s)	42, 104, 117, 255, 523
Hpy188III	TCNNGA	6 cut(s)	296, 332, 417, 677, 686, 722
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	4 cut(s)	224, 272, 277, 756
HpyCH4III	ACNGT	1 cut(s)	737
HpyCH4IV	ACGT	1 cut(s)	700
HpyCH4V	TGCA	4 cut(s)	34, 400, 567, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	700
Hsp92II	CATG	2 cut(s)	430, 577
HspAI	GCGC	2 cut(s)	21, 23
Kzo9I	GATC	4 cut(s)	292, 533, 622, 673
LmnI	GCTCC	2 cut(s)	117, 635
LpnPI	CCDG	6 cut(s)	83, 203, 315, 402, 617, 743
Lsp1109I	GCAGC	1 cut(s)	5
LweI	GCATC	1 cut(s)	554
MaeI	CTAG	2 cut(s)	156, 351
MaeII	ACGT	1 cut(s)	700
MaeIII	GTNAC	2 cut(s)	588, 643
MalI	GATC	4 cut(s)	294, 535, 624, 675
MbiI	CCGCTC	1 cut(s)	161
MboI	GATC	4 cut(s)	292, 533, 622, 673
MboII	GAAGA	4 cut(s)	20, 221, 248, 391
MfeI	CAATTG	1 cut(s)	584
MflI	RGATCY	1 cut(s)	673
MluCI	AATT	5 cut(s)	460, 568, 584, 725, 752
MmeI	TCCRAC	2 cut(s)	82, 233
MnlI	CCTC	8 cut(s)	36, 98, 197, 209, 266, 358, 363, 369
MseI	TTAA	1 cut(s)	515
MslI	CAYNNNNRTG	3 cut(s)	431, 469, 578
MspA1I	CMGCKG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	584
Mva1269I	GAATGC	1 cut(s)	45
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeI	CATATG	1 cut(s)	470
NdeII	GATC	4 cut(s)	292, 533, 622, 673
NlaIII	CATG	2 cut(s)	430, 577
NmuCI	GTSAC	2 cut(s)	588, 643
PauI	GCGCGC	1 cut(s)	21
PctI	GAATGC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	682
PkrI	GCNGC	1 cut(s)	20
Ple19I	CGATCG	1 cut(s)	536
PsiI	TTATAA	1 cut(s)	741
PspPI	GGNCC	3 cut(s)	96, 107, 354
PsuI	RGATCY	1 cut(s)	673
PteI	GCGCGC	1 cut(s)	21
PvuI	CGATCG	1 cut(s)	536
PvuII	CAGCTG	1 cut(s)	18
RseI	CAYNNNNRTG	3 cut(s)	431, 469, 578
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	4 cut(s)	292, 533, 622, 673
Sau96I	GGNCC	3 cut(s)	96, 107, 354
SetI	ASST	8 cut(s)	20, 109, 122, 235, 356, 374, 703, 718
SfaNI	GCATC	1 cut(s)	554
SinI	GGWCC	2 cut(s)	107, 354
SmiMI	CAYNNNNRTG	3 cut(s)	431, 469, 578
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	5 cut(s)	460, 568, 584, 725, 752
SsiI	CCGC	3 cut(s)	67, 89, 161
SspI	AATATT	2 cut(s)	396, 667
SspMI	CTAG	2 cut(s)	156, 351
TaaI	ACNGT	1 cut(s)	737
TaiI	ACGT	1 cut(s)	703
TaqI	TCGA	3 cut(s)	295, 477, 532
TasI	AATT	5 cut(s)	460, 568, 584, 725, 752
TfiI	GAWTC	1 cut(s)	682
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TscAI	CASTG	1 cut(s)	83
TseFI	GTSAC	2 cut(s)	588, 643
TseI	GCWGC	1 cut(s)	18
Tsp45I	GTSAC	2 cut(s)	588, 643
TspDTI	ATGAA	3 cut(s)	243, 453, 590
TspRI	CASTG	1 cut(s)	83
VpaK11BI	GGWCC	2 cut(s)	107, 354
XapI	RAATTY	1 cut(s)	460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XspI	CTAG	2 cut(s)	156, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.