Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010910.1

Orthogroup ID

OG0006686

Physical Location & Seq

Genomic Coordinates Forward (+)

27416 .. 28706

Gene Structure 1291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010910.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggccatcggttttcactgtgatggctgcaccaccatcgtgggcctaaggcccaaaagtttctcaaattcatacatatggttcgagttctacaacattcccttggaacaagatgtttccttaatctcggatactattcgatcgtggcacattattggacgcttgggtggatgcaattccatgaatatgcaattgtcacaatcccctttggataaacgaccaagttatgatcccattcagggagcaaatgtgacaccaactacattttacaatattggagatcttgagattcaagacaacttgggacgtgtttgggtggatatcggtactaaagagccactgatactggatgttctgataaatgcattgactcagataagctccgactttgttggaatcaagcaagtggtgtttggtggaactgaatttgaacactggaaggagaacatgacatcagaggaagttggatatactgttcacaagatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3531

Protein Analysis

162

Amino Acids

18.23

Weight (kDa)

4.81

Isoelectric Point (pI)

50.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29400
fragaria_vesca	FvH4_1g06800 FvH4_1g06800 FvH4_1g06800 FvH4_1g06800
malus_domestica	MD15G1202400.v1.1
prunus_persica	Prupe.7G214800_v2.0.a1
pyrus_communis	pycom15g17980
rosa_chinensis	RchiOBHm_Chr2g0091901 RchiOBHm_Chr2g0092571
rosa_laevigata	RLG00000016324
rosa_multiflora	Rmu_sc0004296.1_g000003 Rmu_sc0010910.1_g000006
rosa_roxburghii	Rroxscaffold_2G00147660 Rroxscaffold_2G00148960
rosa_rugosa	Rorug02G0027600 Rorug02G0027600
rosa_samantha	Rh2AG067100 Rh2AG073500 Rh2BG066100 Rh2BG074400 Rh2CG067500 Rh2CG075500 Rh2DG065800 Rh2DG072600
rosa_wichuraiana	Rw2G005940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	67, 425
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	307
AgsI	TTSAA	2 cut(s)	293, 431
AjiI	CACGTC	1 cut(s)	308
AleI	CACNNNNGTG	1 cut(s)	38
AloI	GAACNNNNNNTCC	1 cut(s)	459
AluBI	AGCT	1 cut(s)	381
AluI	AGCT	1 cut(s)	381
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	3 cut(s)	3, 43, 50
ApeKI	GCWGC	1 cut(s)	27
ApoI	RAATTY	2 cut(s)	67, 425
AspS9I	GGNCC	2 cut(s)	43, 51
AxyI	CCTNAGG	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	14
BccI	CCATC	3 cut(s)	14, 17, 44
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciVI	GTATCC	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	124
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	1 cut(s)	28
BlsI	GCNGC	1 cut(s)	29
BmgBI	CACGTC	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	43, 51
BmsI	GCATC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	351, 440
Bse21I	CCTNAGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	2 cut(s)	176, 355
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	2 cut(s)	351, 440
BseXI	GCAGC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	13
Bsh1285I	CGRYCG	1 cut(s)	143
BshFI	GGCC	3 cut(s)	5, 45, 52
BsiEI	CGRYCG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	3 cut(s)	5, 45, 52
Bsp143I	GATC	3 cut(s)	140, 229, 280
BspANI	GGCC	3 cut(s)	5, 45, 52
BspCNI	CTCAG	1 cut(s)	385
BspPI	GGATC	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	351, 440
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	3 cut(s)	140, 229, 280
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	20, 475
BstDEI	CTNAG	2 cut(s)	47, 372
BstF5I	GGATG	2 cut(s)	176, 355
BstKTI	GATC	3 cut(s)	143, 232, 283
BstMBI	GATC	3 cut(s)	140, 229, 280
BstMCI	CGRYCG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	280
Bsu36I	CCTNAGG	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	5, 45, 52
BtrI	CACGTC	1 cut(s)	308
BtsCI	GGATG	2 cut(s)	176, 355
BtsIMutI	CAGTG	3 cut(s)	16, 338, 433
Cfr13I	GGNCC	2 cut(s)	43, 51
CseI	GACGC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	2 cut(s)	181, 448
CviJI	RGCY	6 cut(s)	5, 27, 45, 52, 337, 381
CviKI_1	RGCY	6 cut(s)	5, 27, 45, 52, 337, 381
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	2 cut(s)	47, 372
DpnI	GATC	3 cut(s)	142, 231, 282
DpnII	GATC	3 cut(s)	140, 229, 280
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	322
Eco81I	CCTNAGG	1 cut(s)	47
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	102
EcoT22I	ATGCAT	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	2 cut(s)	184, 451
FaiI	YATR	8 cut(s)	73, 77, 79, 182, 188, 228, 449, 471
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	2 cut(s)	180, 447
FauNDI	CATATG	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	28
FokI	GGATG	2 cut(s)	183, 362
Fsp4HI	GCNGC	1 cut(s)	28
GluI	GCNGC	1 cut(s)	28
HaeIII	GGCC	3 cut(s)	5, 45, 52
HgaI	GACGC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	184, 451
HinfI	GANTC	3 cut(s)	289, 370, 396
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	5 cut(s)	130, 357, 375, 385, 457
Hpy188III	TCNNGA	2 cut(s)	284, 293
Hpy8I	GTNNAC	1 cut(s)	478
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	2 cut(s)	20, 475
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	4 cut(s)	30, 174, 190, 365
HpyF3I	CTNAG	2 cut(s)	47, 372
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	2 cut(s)	184, 451
Kzo9I	GATC	3 cut(s)	140, 229, 280
LmnI	GCTCC	2 cut(s)	242, 386
LpnPI	CCDG	3 cut(s)	224, 332, 421
Lsp1109I	GCAGC	1 cut(s)	14
LweI	GCATC	1 cut(s)	161
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	2 cut(s)	195, 250
MalI	GATC	3 cut(s)	142, 231, 282
MboI	GATC	3 cut(s)	140, 229, 280
MfeI	CAATTG	1 cut(s)	191
MflI	RGATCY	1 cut(s)	280
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	67, 175, 191, 425
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	364
MmeI	TCCRAC	3 cut(s)	373, 408, 445
MnlI	CCTC	1 cut(s)	451
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	367
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	122
MslI	CAYNNNNRTG	4 cut(s)	21, 38, 76, 185
Msp20I	TGGCCA	1 cut(s)	5
MunI	CAATTG	1 cut(s)	191
NdeI	CATATG	1 cut(s)	77
NdeII	GATC	3 cut(s)	140, 229, 280
NlaIII	CATG	2 cut(s)	184, 451
NmuCI	GTSAC	2 cut(s)	195, 250
NsiI	ATGCAT	1 cut(s)	367
OliI	CACNNNNGTG	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	289, 396
PkrI	GCNGC	1 cut(s)	29
Ple19I	CGATCG	1 cut(s)	143
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PspPI	GGNCC	2 cut(s)	43, 51
PsuI	RGATCY	1 cut(s)	280
PvuI	CGATCG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
RseI	CAYNNNNRTG	4 cut(s)	21, 38, 76, 185
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	1 cut(s)	28
Sau3AI	GATC	3 cut(s)	140, 229, 280
Sau96I	GGNCC	2 cut(s)	43, 51
SchI	GAGTC	1 cut(s)	364
SetI	ASST	2 cut(s)	310, 383
SfaNI	GCATC	1 cut(s)	161
SmiMI	CAYNNNNRTG	4 cut(s)	21, 38, 76, 185
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	4 cut(s)	67, 175, 191, 425
SspI	AATATT	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	20, 475
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	2 cut(s)	84, 139
TasI	AATT	4 cut(s)	67, 175, 191, 425
TfiI	GAWTC	2 cut(s)	289, 396
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	3 cut(s)	23, 345, 440
TseFI	GTSAC	2 cut(s)	195, 250
TseI	GCWGC	1 cut(s)	27
Tsp45I	GTSAC	2 cut(s)	195, 250
TspDTI	ATGAA	2 cut(s)	60, 197
TspRI	CASTG	3 cut(s)	23, 345, 440
XapI	RAATTY	2 cut(s)	67, 425
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.