pycom15g20080

Transmembrane proteins 14C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010179
Physical Location & Seq
Reverse (-)
14350479 .. 14352125
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 729 bp
ATGGCAGACTTGTGCATTTCCCAGTCCTCCCTTTTCCTCCTACGCCCCAAAATCGGAGCGTTCCACAACACCACCATTTCTCTTCTCCTCGGCGGCGGCGGAGCTAGGCGCCTGCAGCACAACAACAATCTCACCTTTCACGGATTCGGAGCGTCTCGCGGTTTGAGCTACACCACGTCGATTCAAAAACTTGGAGTGGTTTCCGACGCGAAAACTACCACCATATTCACTGTTGATTCGGGAATCAAGGATATCGGTATCGAACCGGTTGCCGGCGGCGGAGACGGTGGGGGTGATTTTGGCGGCAGGGGAGGAGGCGGCGGCGGAGGGGGTGGAGGTGGAGGTGATAATAGTGAGGGTAAAGGGGAGGGCGAGGAGGGACCTGAAGAGATCAAGAAGAAAGGGATGTCGATGTCTCAGAAACTAACCCTAGGATATGCTGCCCTTGTTGGAGTGGGTGGCCTTATGGGCTTTTTGAAGAGTGGCAGCCAGAAGTCACTGTTGGCAGGGGGAATATCAGCGGCCTTACTCTTTTATGTTTCTACTGAGCTTCCTGTAAGACCAGTGTTTGCATCATCTATCGGGCTTGGGTTGTCTGCTGCCCTCCTAGCAGTGATGGGTTCTCGTTTCAAGAAGTCAGGGAAGGTATTTCCAGCCGGCGTTGTATCACTTGTGTCACTTGTAATGACCGGTGGCTACTTACATGGAATTCTGCGTAGCGCACACTGA

Protein Analysis

243

Amino Acids

24.23

Weight (kDa)

9.61

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_14 PF03647 143 - 233 1.2e-19 Transmembrane proteins 14C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26240
fragaria_vesca FvH4_1g06370 FvH4_1g06370 FvH4_1g06370 FvH4_1g09870 FvH4_1g09870
malus_domestica MD02G1106000.v1.1 MD15G1225900.v1.1
prunus_persica Prupe.7G189100_v2.0.a1
pyrus_communis pycom02g08390 pycom15g20080
rosa_chinensis RchiOBHm_Chr2g0096571
rosa_laevigata RLG00000016650
rosa_multiflora Rmu_sc0004096.1_g000004
rosa_roxburghii Rroxscaffold_2G00145530
rosa_rugosa Rorug02G0058700
rosa_samantha Rh2AG105800 Rh2BG108300 Rh2CG110100 Rh2DG108900
rosa_wichuraiana Rw2G008190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 108
AccII CGCG 2 cut(s) 159, 209
AcsI RAATTY 1 cut(s) 708
AcuI CTGAAG 1 cut(s) 405
AcyI GRCGYC 1 cut(s) 109
AfiI CCNNNNNNNGG 2 cut(s) 53, 272
AgeI ACCGGT 2 cut(s) 265, 689
AgsI TTSAA 3 cut(s) 185, 478, 631
AjiI CACGTC 1 cut(s) 177
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
AluBI AGCT 3 cut(s) 104, 168, 550
AluI AGCT 3 cut(s) 104, 168, 550
Alw26I GTCTC 3 cut(s) 159, 276, 420
AoxI GGCC 2 cut(s) 460, 522
ApeKI GCWGC 4 cut(s) 115, 440, 486, 599
ApoI RAATTY 1 cut(s) 708
AsiGI ACCGGT 2 cut(s) 265, 689
AspA2I CCTAGG 1 cut(s) 430
AspLEI GCGC 2 cut(s) 111, 722
AspS9I GGNCC 1 cut(s) 380
AsuHPI GGTGA 3 cut(s) 124, 305, 356
AvaII GGWCC 1 cut(s) 380
AvrII CCTAGG 1 cut(s) 430
BanI GGYRCC 1 cut(s) 108
BbvI GCAGC 4 cut(s) 127, 427, 498, 586
BccI CCATC 1 cut(s) 610
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BcoDI GTCTC 3 cut(s) 159, 276, 420
BfaI CTAG 3 cut(s) 105, 431, 608
BfmI CTRYAG 1 cut(s) 113
BfoI RGCGCY 1 cut(s) 112
BglI GCCNNNNNGGC 1 cut(s) 468
BlnI CCTAGG 1 cut(s) 430
Bme18I GGWCC 1 cut(s) 380
BmgBI CACGTC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 380
BmiI GGNNCC 2 cut(s) 110, 381
BmrI ACTGGG 1 cut(s) 16
BmsI GCATC 1 cut(s) 581
BmuI ACTGGG 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 109
BsaJI CCNNGG 2 cut(s) 88, 430
BsaWI WCCGGW 2 cut(s) 265, 689
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 272
Bse118I RCCGGY 4 cut(s) 265, 272, 656, 689
Bse1I ACTGG 2 cut(s) 22, 563
BseDI CCNNGG 2 cut(s) 88, 430
BseGI GGATG 1 cut(s) 411
BseLI CCNNNNNNNGG 2 cut(s) 53, 272
BseMII CTCAG 2 cut(s) 431, 537
BseNI ACTGG 2 cut(s) 22, 563
BseRI GAGGAG 3 cut(s) 77, 327, 389
BseXI GCAGC 4 cut(s) 127, 427, 498, 586
Bsh1236I CGCG 2 cut(s) 159, 209
BshFI GGCC 2 cut(s) 462, 524
BshNI GGYRCC 1 cut(s) 108
BshTI ACCGGT 2 cut(s) 265, 689
BsiSI CCGG 4 cut(s) 266, 273, 657, 690
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 2 cut(s) 53, 272
BsmAI GTCTC 3 cut(s) 159, 276, 420
BsmBI CGTCTC 2 cut(s) 159, 276
BsmFI GGGAC 1 cut(s) 393
BsnI GGCC 2 cut(s) 462, 524
Bsp143I GATC 1 cut(s) 390
BspANI GGCC 2 cut(s) 462, 524
BspCNI CTCAG 2 cut(s) 430, 538
BspFNI CGCG 2 cut(s) 159, 209
BspLI GGNNCC 2 cut(s) 110, 381
BspMAI CTGCAG 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 108
BsrFI RCCGGY 4 cut(s) 265, 272, 656, 689
BsrI ACTGG 2 cut(s) 22, 563
BssAI RCCGGY 4 cut(s) 265, 272, 656, 689
BssECI CCNNGG 2 cut(s) 88, 430
BssMI GATC 1 cut(s) 390
BssNI GRCGYC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 430
Bst4CI ACNGT 3 cut(s) 232, 287, 501
Bst6I CTCTTC 3 cut(s) 87, 381, 473
BstACI GRCGYC 1 cut(s) 109
BstC8I GCNNGC 3 cut(s) 113, 274, 658
BstDEI CTNAG 2 cut(s) 417, 546
BstF5I GGATG 1 cut(s) 411
BstFNI CGCG 2 cut(s) 159, 209
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 2 cut(s) 111, 722
BstKTI GATC 1 cut(s) 393
BstMAI GTCTC 3 cut(s) 159, 276, 420
BstMBI GATC 1 cut(s) 390
BstMWI GCNNNNNNNGC 4 cut(s) 115, 165, 468, 608
BstSFI CTRYAG 1 cut(s) 113
BstUI CGCG 2 cut(s) 159, 209
BstV1I GCAGC 4 cut(s) 127, 427, 498, 586
BsuRI GGCC 2 cut(s) 462, 524
BtrI CACGTC 1 cut(s) 177
BtsCI GGATG 1 cut(s) 411
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 5 cut(s) 228, 497, 570, 618, 724
Cac8I GCNNGC 3 cut(s) 113, 274, 658
CfoI GCGC 2 cut(s) 111, 722
Cfr10I RCCGGY 4 cut(s) 265, 272, 656, 689
Cfr13I GGNCC 1 cut(s) 380
CseI GACGC 2 cut(s) 141, 215
CspAI ACCGGT 2 cut(s) 265, 689
CviAII CATG 1 cut(s) 704
DdeI CTNAG 2 cut(s) 417, 546
DinI GGCGCC 1 cut(s) 110
DpnI GATC 1 cut(s) 392
DpnII GATC 1 cut(s) 390
Eam1104I CTCTTC 3 cut(s) 87, 381, 473
EarI CTCTTC 3 cut(s) 87, 381, 473
EciI GGCGGA 3 cut(s) 114, 294, 339
Eco130I CCWWGG 1 cut(s) 430
Eco32I GATATC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 380
Eco57I CTGAAG 1 cut(s) 405
EcoO109I RGGNCCY 1 cut(s) 380
EcoRI GAATTC 1 cut(s) 708
EcoRV GATATC 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 430
EgeI GGCGCC 1 cut(s) 110
EheI GGCGCC 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 430
Esp3I CGTCTC 2 cut(s) 159, 276
FaeI CATG 1 cut(s) 707
FaiI YATR 5 cut(s) 224, 438, 467, 537, 705
FaqI GGGAC 1 cut(s) 393
FatI CATG 1 cut(s) 703
FokI GGATG 1 cut(s) 418
FspBI CTAG 3 cut(s) 105, 431, 608
GlaI GCGC 2 cut(s) 110, 721
HaeII RGCGCY 1 cut(s) 112
HaeIII GGCC 2 cut(s) 462, 524
HapII CCGG 4 cut(s) 266, 273, 657, 690
HgaI GACGC 2 cut(s) 141, 215
HhaI GCGC 2 cut(s) 111, 722
Hin1I GRCGYC 1 cut(s) 109
Hin1II CATG 1 cut(s) 707
Hin6I GCGC 2 cut(s) 109, 720
HinP1I GCGC 2 cut(s) 109, 720
HinfI GANTC 4 cut(s) 144, 181, 236, 243
HpaII CCGG 4 cut(s) 266, 273, 657, 690
HphI GGTGA 3 cut(s) 124, 305, 356
Hpy188I TCNGA 4 cut(s) 56, 149, 205, 420
Hpy188III TCNNGA 3 cut(s) 240, 394, 631
Hpy99I CGWCG 2 cut(s) 181, 209
HpyAV CCTTC 1 cut(s) 637
HpyCH4III ACNGT 3 cut(s) 232, 287, 501
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 3 cut(s) 15, 115, 572
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 165, 468, 608
HpyF3I CTNAG 2 cut(s) 417, 546
HpySE526I ACGT 1 cut(s) 176
Hsp92I GRCGYC 1 cut(s) 109
Hsp92II CATG 1 cut(s) 707
HspAI GCGC 2 cut(s) 109, 720
KasI GGCGCC 1 cut(s) 108
KroI GCCGGC 2 cut(s) 272, 656
KroNI GCCGGC 2 cut(s) 274, 658
Kzo9I GATC 1 cut(s) 390
LmnI GCTCC 3 cut(s) 56, 101, 149
Lsp1109I GCAGC 4 cut(s) 127, 427, 498, 586
LweI GCATC 1 cut(s) 581
MaeI CTAG 3 cut(s) 105, 431, 608
MaeII ACGT 1 cut(s) 176
MaeIII GTNAC 2 cut(s) 495, 675
MalI GATC 1 cut(s) 392
MboI GATC 1 cut(s) 390
MboII GAAGA 4 cut(s) 74, 398, 409, 490
MluCI AATT 1 cut(s) 708
Mly113I GGCGCC 1 cut(s) 109
MmeI TCCRAC 2 cut(s) 228, 430
MroNI GCCGGC 2 cut(s) 272, 656
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 4 cut(s) 266, 273, 657, 690
MvnI CGCG 2 cut(s) 159, 209
MwoI GCNNNNNNNGC 4 cut(s) 115, 165, 468, 608
NaeI GCCGGC 2 cut(s) 274, 658
NarI GGCGCC 1 cut(s) 109
NdeII GATC 1 cut(s) 390
NgoMIV GCCGGC 2 cut(s) 272, 656
NlaIII CATG 1 cut(s) 707
NlaIV GGNNCC 2 cut(s) 110, 381
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 2 cut(s) 495, 675
PdiI GCCGGC 2 cut(s) 274, 658
PfeI GAWTC 4 cut(s) 144, 181, 236, 243
PinAI ACCGGT 2 cut(s) 265, 689
PluTI GGCGCC 1 cut(s) 112
PpuMI RGGWCCY 1 cut(s) 380
Psp5II RGGWCCY 1 cut(s) 380
PspN4I GGNNCC 2 cut(s) 110, 381
PspPI GGNCC 1 cut(s) 380
PspPPI RGGWCCY 1 cut(s) 380
PstI CTGCAG 1 cut(s) 117
Sau3AI GATC 1 cut(s) 390
Sau96I GGNCC 1 cut(s) 380
SetI ASST 9 cut(s) 106, 137, 170, 179, 340, 346, 385, 552, 648
SfaNI GCATC 1 cut(s) 581
SfcI CTRYAG 1 cut(s) 113
SfoI GGCGCC 1 cut(s) 110
SinI GGWCC 1 cut(s) 380
Sse9I AATT 1 cut(s) 708
SspDI GGCGCC 1 cut(s) 108
SspMI CTAG 3 cut(s) 105, 431, 608
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 3 cut(s) 232, 287, 501
TaiI ACGT 1 cut(s) 179
TaqI TCGA 3 cut(s) 179, 261, 410
TasI AATT 1 cut(s) 708
TauI GCSGC 7 cut(s) 96, 99, 279, 306, 321, 324, 524
TfiI GAWTC 4 cut(s) 144, 181, 236, 243
TscAI CASTG 4 cut(s) 235, 504, 570, 618
TseFI GTSAC 2 cut(s) 495, 675
TseI GCWGC 4 cut(s) 115, 440, 486, 599
Tsp45I GTSAC 2 cut(s) 495, 675
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 4 cut(s) 235, 504, 570, 618
VpaK11BI GGWCC 1 cut(s) 380
XapI RAATTY 1 cut(s) 708
XmaJI CCTAGG 1 cut(s) 430
XspI CTAG 3 cut(s) 105, 431, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.