Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013087

Physical Location & Seq

Genomic Coordinates Forward (+)

15273964 .. 15275199

Gene Structure 1236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGGTTGTGCTGAATCTGGGAGAACATGCCATGGGCAGGTTGTGAAGTATGGGGTGGACTCTGTGCTGCATGTGCAGAACTCAGTAATTCATATGTATTGTTGTTGTGGGGAATTAGAGCTTGCCAGGAAGGTGTTTGATGAAATGCCTGAGAGCGACTTGGTGGTTTCTTGGAATGTTATGCTTGGTGGGTACTGGAAGGGAGGGAAGCCAGAGTGTGCATTGAAGTTGTTTAGGAAAATGGTGGGCATGGGATTGAAGGGGAACGAAACTACCATGGTGAATATGCTTGCGGCTTGTGGTCGGTCTGCTAGACTAAATGAAGGAAGGTCGGTTCATGGATGTCTGATTAGGACATTCTTGGAGTGGAATATATTTCTCAACACAGCTTTGATCGATATGTATTGTAAATGTGAAAGGGTGCAAGTGGCACGTTTGGCATTTGAGAGCACGGCGTATAGAAATCTGGTTTGTTGGAATGCAATGATTTTGGGGCATTGCATTCATGGAAATCCTGAAGATGGATTTAACCTATATAGAGAAATGGTGGGTAGAACGAAGTCAAGAGATGGAGAAACAATCCATGAGAAGGAGAGTTCGAAACCAGATGAAGATCGGGAAGGAATTATCCCAGATGAAGTAACTTTTATAGGTGTTCTTTGTGCCTGTGCCCGCTCTGGATTGGTAAGAGAAGCCAGAGATTACTTCAGCCAAATGATCAATGTCTTCCAAGTAAAGCCCAATTTTGCACACTATTGGTGCATGGCTAATGCTTTTGCTAGTGTGGGGCTTAGACAAGAGGCAGAGGGAATAATTAGGAACATGCCAGAGGTTGCTGTGGACTTGCCACCGGAATCCTTGGTATGGGCTAGTCTGCTTGGATCATGTCGTTTCCAAGGCGATGTGAAGTTGGGAGAAATTGCAAAGTCTCTCATTGAAAAGGAACCTCAGAACATTGCTTACTATCGGTTGCTGCTGAATGTCTATGCCGTGTCAGGTCAATGGGAGAATGTTACTCAGGTAAAAAAGATGATGAAAGAAAAGAAGTTCGGAAGAATCCCCGGATGCAATCTTGTGGACTTGAATGAAATTGTTCATGAGCTCAGAGTTGGAAGACATTATCAAGTTGACCTTGTAGATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

382

Amino Acids

42.95

Weight (kDa)

6.57

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	55 - 101	3.2e-08	PPR repeat family
PPR	PF01535	56 - 86	2.4e-07	PPR repeat
PPR	PF01535	157 - 184	7.4e-06	PPR repeat
E_motif	PF20431	301 - 359	1.7e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51320
malus_domestica	MD15G1241200.v1.1
prunus_persica	Prupe.7G172800_v2.0.a1
pyrus_communis	pycom02g09790 pycom15g21270
rosa_chinensis	RchiOBHm_Chr2g0098771
rosa_laevigata	RLG00000016826 RLG00000037003
rosa_multiflora	Rmu_sc0002776.1_g000032 Rmu_sc0004816.1_g000008
rosa_roxburghii	Rroxscaffold_2G00143720
rosa_rugosa	Rorug02G0074800
rosa_samantha	Rh2AG122400 Rh2BG126100 Rh2CG127000 Rh2DG128100 Rh7DG389800
rosa_wichuraiana	Rw0G004250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AccBSI	CCGCTC	1 cut(s)	675
AciI	CCGC	2 cut(s)	293, 673
AclWI	GGATC	1 cut(s)	889
AcuI	CTGAAG	2 cut(s)	537, 691
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	4 cut(s)	37, 521, 589, 864
AgsI	TTSAA	4 cut(s)	226, 259, 938, 1084
AjnI	CCWGG	1 cut(s)	125
AloI	GAACNNNNNNTCC	2 cut(s)	318, 350
AluBI	AGCT	3 cut(s)	121, 389, 1102
AluI	AGCT	3 cut(s)	121, 389, 1102
Alw21I	GWGCWC	2 cut(s)	452, 1104
Alw26I	GTCTC	1 cut(s)	933
AlwI	GGATC	1 cut(s)	889
ApeKI	GCWGC	2 cut(s)	67, 973
Asp700I	GAANNNNTTC	1 cut(s)	1092
AsuC2I	CCSGG	1 cut(s)	1062
AsuHPI	GGTGA	1 cut(s)	292
AsuII	TTCGAA	1 cut(s)	599
BaeGI	GKGCMC	1 cut(s)	673
BanII	GRGCYC	1 cut(s)	1104
BbsI	GAAGAC	2 cut(s)	718, 1120
Bbv12I	GWGCWC	2 cut(s)	452, 1104
BbvI	GCAGC	2 cut(s)	54, 960
BccI	CCATC	2 cut(s)	515, 563
BceAI	ACGGC	2 cut(s)	468, 974
BciT130I	CCWGG	1 cut(s)	127
BclI	TGATCA	1 cut(s)	717
BcnI	CCSGG	1 cut(s)	1062
BcoDI	GTCTC	1 cut(s)	933
BfaI	CTAG	3 cut(s)	312, 780, 870
BfuAI	ACCTGC	1 cut(s)	28
BisI	GCNGC	3 cut(s)	68, 294, 974
BlsI	GCNGC	3 cut(s)	69, 295, 975
Bme1390I	CCNGG	2 cut(s)	127, 1062
BmiI	GGNNCC	1 cut(s)	945
BmrFI	CCNGG	2 cut(s)	127, 1062
BmsI	GCATC	1 cut(s)	1055
BpiI	GAAGAC	2 cut(s)	718, 1120
Bpu14I	TTCGAA	1 cut(s)	599
BpuMI	CCSGG	1 cut(s)	1062
Bsa29I	ATCGAT	1 cut(s)	396
BsaBI	GATNNNNATC	1 cut(s)	612
BsaJI	CCNNGG	5 cut(s)	31, 276, 858, 895, 1060
BsaWI	WCCGGW	1 cut(s)	850
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 521, 589, 864
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	3 cut(s)	489, 496, 954
Bse8I	GATNNNNATC	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	127
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	5 cut(s)	31, 276, 858, 895, 1060
BseGI	GGATG	2 cut(s)	347, 1070
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	4 cut(s)	37, 521, 589, 864
BseMI	GCAATG	3 cut(s)	489, 496, 954
BseMII	CTCAG	5 cut(s)	96, 141, 962, 1031, 1117
BseNI	ACTGG	1 cut(s)	200
BseSI	GKGCMC	1 cut(s)	673
BseXI	GCAGC	2 cut(s)	54, 960
BsgI	GTGCAG	1 cut(s)	95
BshVI	ATCGAT	1 cut(s)	396
BsiHKAI	GWGCWC	2 cut(s)	452, 1104
BsiSI	CCGG	2 cut(s)	851, 1062
BslI	CCNNNNNNNGG	4 cut(s)	37, 521, 589, 864
BsmAI	GTCTC	1 cut(s)	933
BsmI	GAATGC	2 cut(s)	484, 501
Bsp119I	TTCGAA	1 cut(s)	599
Bsp1286I	GDGCHC	3 cut(s)	452, 673, 1104
Bsp143I	GATC	4 cut(s)	393, 613, 717, 881
Bsp19I	CCATGG	2 cut(s)	31, 276
BspACI	CCGC	2 cut(s)	293, 673
BspCNI	CTCAG	5 cut(s)	95, 142, 961, 1030, 1116
BspDI	ATCGAT	1 cut(s)	396
BspHI	TCATGA	1 cut(s)	1096
BspLI	GGNNCC	1 cut(s)	945
BspMI	ACCTGC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	889
BspT104I	TTCGAA	1 cut(s)	599
BsrBI	CCGCTC	1 cut(s)	675
BsrDI	GCAATG	3 cut(s)	489, 496, 954
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	5 cut(s)	31, 276, 858, 895, 1060
BssMI	GATC	4 cut(s)	393, 613, 717, 881
BssT1I	CCWWGG	4 cut(s)	31, 276, 858, 895
Bst2UI	CCWGG	1 cut(s)	127
BstBI	TTCGAA	1 cut(s)	599
BstC8I	GCNNGC	3 cut(s)	123, 291, 673
BstDEI	CTNAG	6 cut(s)	82, 150, 791, 948, 1017, 1103
BstDSI	CCRYGG	2 cut(s)	31, 276
BstF5I	GGATG	2 cut(s)	347, 1070
BstKTI	GATC	4 cut(s)	396, 616, 720, 884
BstMAI	GTCTC	1 cut(s)	933
BstMBI	GATC	4 cut(s)	393, 613, 717, 881
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 437
BstNI	CCWGG	1 cut(s)	127
BstNSI	RCATGY	3 cut(s)	30, 74, 826
BstSCI	CCNGG	2 cut(s)	125, 1060
BstSLI	GKGCMC	1 cut(s)	673
BstV1I	GCAGC	2 cut(s)	54, 960
BstV2I	GAAGAC	2 cut(s)	718, 1120
Bsu15I	ATCGAT	1 cut(s)	396
BsuTUI	ATCGAT	1 cut(s)	396
BtgI	CCRYGG	2 cut(s)	31, 276
BtgZI	GCGATG	1 cut(s)	915
BtsCI	GGATG	2 cut(s)	347, 1070
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	3 cut(s)	123, 291, 673
CciI	TCATGA	1 cut(s)	1096
ClaI	ATCGAT	1 cut(s)	396
Csp6I	GTAC	1 cut(s)	193
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	6 cut(s)	82, 150, 791, 948, 1017, 1103
DpnI	GATC	4 cut(s)	395, 615, 719, 883
DpnII	GATC	4 cut(s)	393, 613, 717, 881
Ecl136II	GAGCTC	1 cut(s)	1102
Eco130I	CCWWGG	4 cut(s)	31, 276, 858, 895
Eco24I	GRGCYC	1 cut(s)	1104
Eco53kI	GAGCTC	1 cut(s)	1102
Eco57I	CTGAAG	2 cut(s)	537, 691
EcoICRI	GAGCTC	1 cut(s)	1102
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	4 cut(s)	31, 276, 858, 895
EcoT38I	GRGCYC	1 cut(s)	1104
ErhI	CCWWGG	4 cut(s)	31, 276, 858, 895
FalI	AAGNNNNNCTT	1 cut(s)	1116
FauI	CCCGC	1 cut(s)	680
FauNDI	CATATG	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	717
Fnu4HI	GCNGC	3 cut(s)	68, 294, 974
FokI	GGATG	2 cut(s)	354, 1077
FriOI	GRGCYC	1 cut(s)	1104
Fsp4HI	GCNGC	3 cut(s)	68, 294, 974
FspBI	CTAG	3 cut(s)	312, 780, 870
GluI	GCNGC	3 cut(s)	68, 294, 974
HapII	CCGG	2 cut(s)	851, 1062
HincII	GTYRAC	1 cut(s)	1129
HindII	GTYRAC	1 cut(s)	1129
HinfI	GANTC	5 cut(s)	14, 59, 854, 1056, 1139
HpaII	CCGG	2 cut(s)	851, 1062
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	4 cut(s)	58, 841, 1078, 1129
Hpy188I	TCNGA	4 cut(s)	348, 951, 1052, 1106
Hpy188III	TCNNGA	6 cut(s)	515, 564, 617, 678, 1097, 1143
Hpy8I	GTNNAC	4 cut(s)	58, 841, 1078, 1129
HpyAV	CCTTC	7 cut(s)	124, 193, 253, 317, 321, 583, 614
HpyCH4IV	ACGT	1 cut(s)	433
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 437
HpyF3I	CTNAG	6 cut(s)	82, 150, 791, 948, 1017, 1103
HpySE526I	ACGT	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	717
Kzo9I	GATC	4 cut(s)	393, 613, 717, 881
Lsp1109I	GCAGC	2 cut(s)	54, 960
LweI	GCATC	1 cut(s)	1055
MaeI	CTAG	3 cut(s)	312, 780, 870
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	2 cut(s)	640, 1012
MalI	GATC	4 cut(s)	395, 615, 719, 883
MbiI	CCGCTC	1 cut(s)	675
MboI	GATC	4 cut(s)	393, 613, 717, 881
MboII	GAAGA	5 cut(s)	530, 623, 718, 1065, 1125
MhlI	GDGCHC	3 cut(s)	452, 673, 1104
MluCI	AATT	7 cut(s)	87, 113, 624, 742, 813, 918, 1089
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	2 cut(s)	455, 1090
MnlI	CCTC	5 cut(s)	197, 793, 799, 823, 957
MroXI	GAANNNNTTC	1 cut(s)	1092
MseI	TTAA	1 cut(s)	528
MspI	CCGG	2 cut(s)	851, 1062
MspR9I	CCNGG	2 cut(s)	127, 1062
Mva1269I	GAATGC	2 cut(s)	484, 501
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	73, 437
NciI	CCSGG	1 cut(s)	1062
NcoI	CCATGG	2 cut(s)	31, 276
NdeI	CATATG	1 cut(s)	93
NdeII	GATC	4 cut(s)	393, 613, 717, 881
NlaIV	GGNNCC	1 cut(s)	945
NspI	RCATGY	3 cut(s)	30, 74, 826
NspV	TTCGAA	1 cut(s)	599
PagI	TCATGA	1 cut(s)	1096
PctI	GAATGC	2 cut(s)	484, 501
PdmI	GAANNNNTTC	1 cut(s)	1092
PfeI	GAWTC	4 cut(s)	14, 854, 1056, 1139
PkrI	GCNGC	3 cut(s)	69, 295, 975
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	1104
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	945
PsrI	GAACNNNNNNTAC	2 cut(s)	944, 976
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SacI	GAGCTC	1 cut(s)	1104
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	3 cut(s)	68, 294, 974
Sau3AI	GATC	4 cut(s)	393, 613, 717, 881
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	127, 1062
SduI	GDGCHC	3 cut(s)	452, 673, 1104
SfaNI	GCATC	1 cut(s)	1055
SfuI	TTCGAA	1 cut(s)	599
Sse9I	AATT	7 cut(s)	87, 113, 624, 742, 813, 918, 1089
SsiI	CCGC	2 cut(s)	293, 673
SspMI	CTAG	3 cut(s)	312, 780, 870
SstI	GAGCTC	1 cut(s)	1104
StyD4I	CCNGG	2 cut(s)	125, 1060
StyI	CCWWGG	4 cut(s)	31, 276, 858, 895
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	2 cut(s)	396, 599
TaqII	GACCGA	1 cut(s)	294
TasI	AATT	7 cut(s)	87, 113, 624, 742, 813, 918, 1089
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	4 cut(s)	14, 854, 1056, 1139
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TseI	GCWGC	2 cut(s)	67, 973
XceI	RCATGY	3 cut(s)	30, 74, 826
XmnI	GAANNNNTTC	1 cut(s)	1092
XspI	CTAG	3 cut(s)	312, 780, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.