Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005222

Physical Location & Seq

Genomic Coordinates Reverse (-)

15276528 .. 15278982

Gene Structure 2455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCGTCGTCGTCGAAGAAGATCACCCTCAAGAGCTCGGACGGCGAGTCGTTCGAGGTCGAGGAGGCGGTGGCGCTGGAGTCGCAGACCATCAAGCACATGATCGAGGACGATTGCGCAGACAACGGCATTCCTCTGCCCAATGTCACCAGCAAGATTTTGGCCAAGGTCATCGAGTACTGCAAGAAGCACGTCGACGCCGCCAAGCCCGACGAGAAGATCTCCGAGGACGATCTCAAGGGCTGGGATCAGGAATTCGTCAAGGTTGACCAAGCTACGCTCTTTGACCTCATTCTGGCTGCAAACTACCTGAACATCAAGACCCTTTTGGACCTGACTTGCCAGACGGTTGCAGACATGATCAAGGGTAAGACTCCGGAAGATATCAGAAAGACCTTCAACATCAAGAACGACTTCACCCTGGAGGAAGAGGAGGAAGTTCGTCGTGAGAACCAGTGGGCGTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

157

Amino Acids

17.72

Weight (kDa)

4.62

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	6 - 65	4.2e-32	Skp1 family, tetramerisation domain
Skp1	PF01466	107 - 154	5e-29	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53060
fragaria_vesca	FvH4_1g11300 FvH4_2g38100 FvH4_2g38100 FvH4_2g38100
malus_domestica	MD10G1036500.v1.1
prunus_persica	Prupe.1G361400_v2.0.a1 Prupe.7G172700_v2.0.a1 Prupe.7G172700_v2.0.a1
pyrus_communis	pycom02g09840 pycom15g21280
rosa_chinensis	RchiOBHm_Chr2g0098781 RchiOBHm_Chr3g0451711 RchiOBHm_Chr3g0451731 RchiOBHm_Chr6g0303451
rosa_laevigata	RLG00000016827
rosa_multiflora	Rmu_sc0002776.1_g000033
rosa_roxburghii	Rroxscaffold_2G00143710 Rroxscaffold_7G00164740
rosa_rugosa	Rorug02G0074800 Rorug06G0321300
rosa_samantha	Rh2AG122500 Rh2BG126200 Rh2CG127100 Rh6AG435900 Rh6CG447800 Rh6DG434500
rosa_wichuraiana	Rw0G004260 Rw6G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	195
AccIII	TCCGGA	1 cut(s)	376
AciI	CCGC	2 cut(s)	68, 201
AclWI	GGATC	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	2 cut(s)	400, 467
AhdI	GACNNNNNGTC	1 cut(s)	46
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	2 cut(s)	36, 275
AluI	AGCT	2 cut(s)	36, 275
Alw21I	GWGCWC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	255
Aor13HI	TCCGGA	1 cut(s)	376
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	254
Asp700I	GAANNNNTTC	1 cut(s)	413
AspLEI	GCGC	2 cut(s)	76, 119
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	3 cut(s)	16, 139, 409
AvaII	GGWCC	1 cut(s)	331
BalI	TGGCCA	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	2 cut(s)	58, 142
BciT130I	CCWGG	1 cut(s)	422
BclI	TGATCA	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	77
BglII	AGATCT	1 cut(s)	219
BisI	GCNGC	2 cut(s)	201, 300
BlsI	GCNGC	2 cut(s)	202, 301
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	422
Bme18I	GGWCC	1 cut(s)	331
BmeRI	GACNNNNNGTC	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	422
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpmI	CTGGAG	2 cut(s)	98, 443
BpuEI	CTTGAG	2 cut(s)	14, 221
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	3 cut(s)	165, 225, 420
BsaWI	WCCGGW	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	454
BseAI	TCCGGA	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	3 cut(s)	165, 225, 420
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseNI	ACTGG	1 cut(s)	454
BseRI	GAGGAG	2 cut(s)	77, 446
BseXI	GCAGC	1 cut(s)	286
BseYI	CCCAGC	1 cut(s)	243
BshFI	GGCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp13I	TCCGGA	1 cut(s)	376
Bsp143I	GATC	6 cut(s)	21, 102, 219, 232, 247, 360
BspACI	CCGC	2 cut(s)	68, 201
BspANI	GGCC	1 cut(s)	164
BspEI	TCCGGA	1 cut(s)	376
BspPI	GGATC	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	3 cut(s)	165, 225, 420
BssMI	GATC	6 cut(s)	21, 102, 219, 232, 247, 360
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	1 cut(s)	198
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	2 cut(s)	76, 119
BstKTI	GATC	6 cut(s)	24, 105, 222, 235, 250, 363
BstMBI	GATC	6 cut(s)	21, 102, 219, 232, 247, 360
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 82
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	164
BtrI	CACGTC	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	461
CfoI	GCGC	2 cut(s)	76, 119
Cfr13I	GGNCC	1 cut(s)	331
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	2 cut(s)	100, 358
CviJI	RGCY	6 cut(s)	36, 164, 208, 243, 275, 299
CviKI_1	RGCY	6 cut(s)	36, 164, 208, 243, 275, 299
CviQI	GTAC	1 cut(s)	178
DpnI	GATC	6 cut(s)	23, 104, 221, 234, 249, 362
DpnII	GATC	6 cut(s)	21, 102, 219, 232, 247, 360
DriI	GACNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	423
Eam1105I	GACNNNNNGTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	423
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	38
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	420
EcoRV	GATATC	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	103, 361
FaiI	YATR	2 cut(s)	101, 359
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FatI	CATG	2 cut(s)	99, 357
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	201, 300
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	201, 300
FspI	TGCGCA	1 cut(s)	118
GlaI	GCGC	2 cut(s)	75, 118
GluI	GCNGC	2 cut(s)	201, 300
GsaI	CCCAGC	1 cut(s)	247
GsuI	CTGGAG	2 cut(s)	98, 443
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	1 cut(s)	377
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	2 cut(s)	76, 119
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	2 cut(s)	103, 361
Hin6I	GCGC	2 cut(s)	74, 117
HinP1I	GCGC	2 cut(s)	74, 117
HincII	GTYRAC	2 cut(s)	196, 268
HindII	GTYRAC	2 cut(s)	196, 268
HinfI	GANTC	3 cut(s)	47, 80, 373
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	3 cut(s)	16, 139, 409
Hpy166II	GTNNAC	2 cut(s)	196, 268
Hpy188I	TCNGA	3 cut(s)	40, 226, 389
Hpy188III	TCNNGA	6 cut(s)	31, 251, 319, 377, 406, 446
Hpy8I	GTNNAC	2 cut(s)	196, 268
Hpy99I	CGWCG	7 cut(s)	10, 13, 16, 197, 200, 215, 447
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	3 cut(s)	183, 302, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 82
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	103, 361
HspAI	GCGC	2 cut(s)	74, 117
Kpn2I	TCCGGA	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	6 cut(s)	21, 102, 219, 232, 247, 360
Lsp1109I	GCAGC	1 cut(s)	286
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	6 cut(s)	23, 104, 221, 234, 249, 362
MboI	GATC	6 cut(s)	21, 102, 219, 232, 247, 360
MboII	GAAGA	5 cut(s)	28, 31, 229, 392, 440
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	164
MluCI	AATT	1 cut(s)	254
MluNI	TGGCCA	1 cut(s)	164
MlyI	GAGTC	3 cut(s)	56, 89, 367
Mox20I	TGGCCA	1 cut(s)	164
MroI	TCCGGA	1 cut(s)	376
MroXI	GAANNNNTTC	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	164
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	422
MwoI	GCNNNNNNNGC	2 cut(s)	42, 82
NdeII	GATC	6 cut(s)	21, 102, 219, 232, 247, 360
NlaIII	CATG	2 cut(s)	103, 361
NmuCI	GTSAC	1 cut(s)	145
NsbI	TGCGCA	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PctI	GAATGC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	202, 301
PleI	GAGTC	3 cut(s)	55, 88, 367
PpsI	GAGTC	3 cut(s)	55, 88, 367
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	420
PspFI	CCCAGC	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	420
PspPI	GGNCC	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	219
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SacI	GAGCTC	1 cut(s)	38
SalI	GTCGAC	1 cut(s)	194
SatI	GCNGC	2 cut(s)	201, 300
Sau3AI	GATC	6 cut(s)	21, 102, 219, 232, 247, 360
Sau96I	GGNCC	1 cut(s)	331
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	3 cut(s)	56, 89, 367
ScrFI	CCNGG	1 cut(s)	422
SduI	GDGCHC	1 cut(s)	38
SgrDI	CGTCGACG	1 cut(s)	194
SinI	GGWCC	1 cut(s)	331
SmlI	CTYRAG	2 cut(s)	29, 236
SmoI	CTYRAG	2 cut(s)	29, 236
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	2 cut(s)	68, 201
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	420
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	6 cut(s)	14, 54, 60, 105, 174, 195
TasI	AATT	1 cut(s)	254
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	1 cut(s)	203
TscAI	CASTG	1 cut(s)	461
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	145
TspRI	CASTG	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	413
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.