Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010698

Physical Location & Seq

Genomic Coordinates Forward (+)

20651672 .. 20654005

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAGAACCCGGAAAACATTGTGTGGCATAAGTGCTCGGTGGAGAAACTTGATAGGCAACAATTACTTAAGCAGAAAGGCTGTGTCATATGGATTACTGGTTTAAGTGGTTCAGGAAAAAGCACTGTGGCATGTGCTTTGAGTCAAGGCTTGCACATGAGAGGAAGGCTCACCTACATACTTGATGGTGACAACGTTCGTCATGGTCTAAATCGTGATCTTAGATGTCGGCTCTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGGTCCGAGGTAGCTAAGCTCTTTGCGGATGCTGGCATCATTTGTATTGCTAGCTTAATATCTCCCTACAGAAAGGACCGAGATGCCTGCCGTGCGCTGTTTCCTGAAAGAGATTTTATTGAGGTGTACATGGATGTGCCGCTGCATGTGTGTGAGAATAGGGACCCAAAGGGACTCTACAAGCTTGCACGAGCTGGAAAAATCAAGGGCTTTACAGGGGTTGATGATCCATATGAGCCACCATTAAAGTGTGAGATAGTATTGCAGCAGAAGGGTACGGATTCTGTCACCCCAGGCGAGATGGCTGAAACCATGATATCATATTTGGAGGAGAAAGGGTATCTGCAGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004020 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

209

Amino Acids

23.58

Weight (kDa)

8.82

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	26 - 179	2e-60	Adenylylsulphate kinase
AAA_33	PF13671	29 - 145	1.6e-07	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39940
fragaria_vesca	FvH4_1g17660 FvH4_1g17660
malus_domestica	MD02G1185400.v1.1 MD15G1297000.v1.1
prunus_persica	Prupe.6G221200_v2.0.a1
pyrus_communis	pycom02g15040 pycom02g15050 pycom15g26000
rosa_chinensis	RchiOBHm_Chr2g0107981
rosa_laevigata	RLG00000017631
rosa_multiflora	Rmu_sc0001484.1_g000028
rosa_roxburghii	Rroxscaffold_2G00135760
rosa_rugosa	Rorug02G0149200 Rorug02G0149300 Rorug02G0149300
rosa_samantha	Rh2BG211300 Rh2CG203100 Rh2DG206100
rosa_wichuraiana	Rw2G015750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	299, 413
AclI	AACGTT	1 cut(s)	195
AclWI	GGATC	1 cut(s)	494
AfaI	GTAC	2 cut(s)	401, 550
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	239
AjnI	CCWGG	1 cut(s)	565
AluBI	AGCT	5 cut(s)	287, 292, 327, 457, 467
AluI	AGCT	5 cut(s)	287, 292, 327, 457, 467
Alw21I	GWGCWC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	494
ApeKI	GCWGC	2 cut(s)	415, 538
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	3 cut(s)	276, 349, 436
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	3 cut(s)	163, 200, 553
AsuNHI	GCTAGC	1 cut(s)	323
AvaII	GGWCC	3 cut(s)	276, 349, 436
BauI	CACGAG	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	402, 550
BccI	CCATC	2 cut(s)	179, 568
BceAI	ACGGC	1 cut(s)	348
BcgI	CGANNNNNNTGC	2 cut(s)	342, 376
BciT130I	CCWGG	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	11
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	2 cut(s)	340, 617
BfrI	CTTAAG	1 cut(s)	68
BisI	GCNGC	3 cut(s)	413, 416, 539
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	3 cut(s)	414, 417, 540
Bme1390I	CCNGG	2 cut(s)	11, 567
Bme18I	GGWCC	3 cut(s)	276, 349, 436
BmgT120I	GGNCC	3 cut(s)	276, 349, 436
BmiI	GGNNCC	2 cut(s)	437, 438
BmrFI	CCNGG	2 cut(s)	11, 567
BmsI	GCATC	3 cut(s)	292, 318, 346
BmtI	GCTAGC	1 cut(s)	327
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	279, 565
BsaXI	ACNNNNNCTCC	2 cut(s)	596, 626
Bse1I	ACTGG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	2 cut(s)	279, 565
BseGI	GGATG	2 cut(s)	307, 412
BseNI	ACTGG	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	617
BseXI	GCAGC	2 cut(s)	402, 550
BsgI	GTGCAG	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	2 cut(s)	449, 459
BsmFI	GGGAC	2 cut(s)	449, 459
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	3 cut(s)	217, 248, 499
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	2 cut(s)	299, 413
BspLI	GGNNCC	2 cut(s)	437, 438
BspMAI	CTGCAG	1 cut(s)	621
BspOI	GCTAGC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	494
BspTI	CTTAAG	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	279, 565
BssMI	GATC	3 cut(s)	217, 248, 499
BssSI	CACGAG	1 cut(s)	462
Bst2BI	CACGAG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	1 cut(s)	127
BstAFI	CTTAAG	1 cut(s)	68
BstAUI	TGTACA	1 cut(s)	399
BstC8I	GCNNGC	6 cut(s)	152, 307, 325, 361, 459, 621
BstDEI	CTNAG	2 cut(s)	221, 288
BstF5I	GGATG	2 cut(s)	307, 412
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	3 cut(s)	220, 251, 502
BstMBI	GATC	3 cut(s)	217, 248, 499
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	567
BstNSI	RCATGY	2 cut(s)	135, 422
BstSCI	CCNGG	2 cut(s)	9, 565
BstSFI	CTRYAG	2 cut(s)	340, 617
BstV1I	GCAGC	2 cut(s)	402, 550
BtsCI	GGATG	2 cut(s)	307, 412
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	6 cut(s)	152, 307, 325, 361, 459, 621
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	3 cut(s)	276, 349, 436
Csp6I	GTAC	2 cut(s)	400, 549
CviAII	CATG	6 cut(s)	132, 157, 203, 403, 419, 586
CviQI	GTAC	2 cut(s)	400, 549
DdeI	CTNAG	2 cut(s)	221, 288
DpnI	GATC	3 cut(s)	219, 250, 501
DpnII	GATC	3 cut(s)	217, 248, 499
Eco32I	GATATC	1 cut(s)	591
Eco47I	GGWCC	3 cut(s)	276, 349, 436
EcoO109I	RGGNCCY	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	565
EcoRV	GATATC	1 cut(s)	591
FaeI	CATG	6 cut(s)	135, 160, 206, 406, 422, 589
FaqI	GGGAC	2 cut(s)	449, 459
FatI	CATG	6 cut(s)	131, 156, 202, 402, 418, 585
FauNDI	CATATG	2 cut(s)	89, 505
Fnu4HI	GCNGC	3 cut(s)	413, 416, 539
FokI	GGATG	2 cut(s)	314, 419
Fsp4HI	GCNGC	3 cut(s)	413, 416, 539
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	3 cut(s)	413, 416, 539
HapII	CCGG	1 cut(s)	11
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	6 cut(s)	135, 160, 206, 406, 422, 589
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	3 cut(s)	142, 447, 554
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	3 cut(s)	163, 200, 553
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	3 cut(s)	114, 215, 377
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	2 cut(s)	159, 538
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	6 cut(s)	154, 255, 418, 461, 538, 619
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	2 cut(s)	221, 288
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	6 cut(s)	135, 160, 206, 406, 422, 589
HspAI	GCGC	1 cut(s)	368
KflI	GGGWCCC	1 cut(s)	436
Kzo9I	GATC	3 cut(s)	217, 248, 499
Lsp1109I	GCAGC	2 cut(s)	402, 550
LweI	GCATC	3 cut(s)	292, 318, 346
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	188, 559
MalI	GATC	3 cut(s)	219, 250, 501
MboI	GATC	3 cut(s)	217, 248, 499
MboII	GAAGA	2 cut(s)	258, 280
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	2 cut(s)	62, 271
MlyI	GAGTC	2 cut(s)	151, 441
MnlI	CCTC	4 cut(s)	155, 274, 388, 595
MseI	TTAA	4 cut(s)	69, 104, 329, 518
MslI	CAYNNNNRTG	3 cut(s)	407, 423, 520
MspA1I	CMGCKG	1 cut(s)	415
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	2 cut(s)	11, 567
MvaI	CCWGG	1 cut(s)	567
MwoI	GCNNNNNNNGC	1 cut(s)	365
NciI	CCSGG	1 cut(s)	11
NdeI	CATATG	2 cut(s)	89, 505
NdeII	GATC	3 cut(s)	217, 248, 499
NheI	GCTAGC	1 cut(s)	323
NlaIII	CATG	6 cut(s)	135, 160, 206, 406, 422, 589
NlaIV	GGNNCC	2 cut(s)	437, 438
NmuCI	GTSAC	2 cut(s)	188, 559
NspI	RCATGY	2 cut(s)	135, 422
PfeI	GAWTC	1 cut(s)	554
PkrI	GCNGC	3 cut(s)	414, 417, 540
PleI	GAGTC	2 cut(s)	150, 441
PpsI	GAGTC	2 cut(s)	150, 441
PpuMI	RGGWCCY	1 cut(s)	436
Psp1406I	AACGTT	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	436
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	2 cut(s)	437, 438
PspPI	GGNCC	3 cut(s)	276, 349, 436
PspPPI	RGGWCCY	1 cut(s)	436
PstI	CTGCAG	1 cut(s)	621
RsaI	GTAC	2 cut(s)	401, 550
RsaNI	GTAC	2 cut(s)	400, 549
RseI	CAYNNNNRTG	3 cut(s)	407, 423, 520
SaqAI	TTAA	4 cut(s)	69, 104, 329, 518
SatI	GCNGC	3 cut(s)	413, 416, 539
Sau3AI	GATC	3 cut(s)	217, 248, 499
Sau96I	GGNCC	3 cut(s)	276, 349, 436
SchI	GAGTC	2 cut(s)	151, 441
ScrFI	CCNGG	2 cut(s)	11, 567
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	9 cut(s)	176, 198, 285, 289, 294, 329, 399, 459, 469
SfaNI	GCATC	3 cut(s)	292, 318, 346
SfcI	CTRYAG	2 cut(s)	340, 617
SinI	GGWCC	3 cut(s)	276, 349, 436
SmiMI	CAYNNNNRTG	3 cut(s)	407, 423, 520
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	62, 271
SsiI	CCGC	2 cut(s)	299, 413
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	9, 565
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	198
TaqII	GACCGA	1 cut(s)	366
TasI	AATT	2 cut(s)	62, 271
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	1 cut(s)	415
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	4 cut(s)	69, 104, 329, 518
Tru9I	TTAA	4 cut(s)	69, 104, 329, 518
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	2 cut(s)	188, 559
TseI	GCWGC	2 cut(s)	415, 538
Tsp45I	GTSAC	2 cut(s)	188, 559
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	1 cut(s)	130
Vha464I	CTTAAG	1 cut(s)	68
VpaK11BI	GGWCC	3 cut(s)	276, 349, 436
XceI	RCATGY	2 cut(s)	135, 422
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.