pycom15g27410

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0007378
Physical Location & Seq
Reverse (-)
22856974 .. 22859304
2331 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 792 bp
ATGCGAGGCAAGGGTACATCTTATGACAACATGACCATAATCGTTCGGGACTATGTGGAGAGCTTGATATCCAAGTATCCTTACTGGAACAGAACCTTGGGCGCGGACCACTTCTTTGTCACGTGTCACGATGTTGGGGTGAGGGCAACTGAAGGACTTCCACTTCTTGTGAAAAACTCGATTCGAGTTGTGTGCTCCCCTAGCTATGATGTTGGTTTCATTCCGCACAAAGATGTAGCCCTTCCTCAAGTACTCCAGCCATTTGCTCTTCCAGCCGGAGGAAACGATGTGGAGAACAGGACAACCCTCGGTTTTTGGGCCGGTCATCGAAATTCCAAAATTAGAGTTATACTGGCACGTGTATGGGAGAACGACACAGAGCTTTACATATTGAACAACAGAATAAATAGGGCAGAAGGGAATTTGTTATATCAAAAGAAGTTTTATGAAACAAAATTCTGCATATGCCCAGGTGGCTCCCAGGTCAACAGCGCTCGTCCAACTGACTCAATCCATTACGGATGTATTCCTGTGATATTATCAAATTACTATGACCTGCCATTCAATGACATTCTCGATTGGCGAAAATTTGCTGTCATCCTTAGGGAGAAGGATGTGTATCAACTCAAACAAATTCTTAAGGACATACCCTATTCAGAGTTTCTTACGCTTCACAAAAACTTGGTTAAGGTCCAGCAGCACTTCCAGTGGAATTCACCGCCTGTGAAATATGATGCATTTCACATGGTCATGTACGATCTCTCGTTGCGTCACCATGTGATCAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

264

Amino Acids

30.53

Weight (kDa)

8.95

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 11 - 215 6.4e-44 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 564
AccII CGCG 1 cut(s) 104
AciI CCGC 3 cut(s) 104, 224, 719
AcsI RAATTY 6 cut(s) 331, 421, 455, 587, 633, 712
AcuI CTGAAG 1 cut(s) 171
AcvI CACGTG 2 cut(s) 123, 359
AdeI CACNNNGTG 1 cut(s) 778
AfaI GTAC 3 cut(s) 16, 252, 755
AfeI AGCGCT 1 cut(s) 493
AfiI CCNNNNNNNGG 1 cut(s) 278
AflII CTTAAG 1 cut(s) 638
AflIII ACRYGT 2 cut(s) 122, 358
AgsI TTSAA 2 cut(s) 394, 565
AjnI CCWGG 2 cut(s) 469, 480
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AluBI AGCT 3 cut(s) 63, 204, 382
AluI AGCT 3 cut(s) 63, 204, 382
Alw21I GWGCWC 1 cut(s) 197
Aor51HI AGCGCT 1 cut(s) 493
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 1 cut(s) 697
ApoI RAATTY 6 cut(s) 331, 421, 455, 587, 633, 712
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp700I GAANNNNTTC 1 cut(s) 156
AspLEI GCGC 2 cut(s) 104, 494
AspS9I GGNCC 3 cut(s) 106, 318, 691
AsuHPI GGTGA 3 cut(s) 151, 708, 764
AvaII GGWCC 2 cut(s) 106, 691
AxyI CCTNAGG 1 cut(s) 602
BbrPI CACGTG 2 cut(s) 123, 359
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 709
BcgI CGANNNNNNTGC 2 cut(s) 174, 208
BciT130I CCWGG 2 cut(s) 471, 482
BciVI GTATCC 1 cut(s) 87
BclI TGATCA 1 cut(s) 780
BfaI CTAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 495
BfrI CTTAAG 1 cut(s) 638
BfuAI ACCTGC 1 cut(s) 564
BfuI GTATCC 1 cut(s) 87
BglI GCCNNNNNGGC 1 cut(s) 474
BisI GCNGC 1 cut(s) 698
BlsI GCNGC 1 cut(s) 699
BmcAI AGTACT 1 cut(s) 252
Bme1390I CCNGG 2 cut(s) 471, 482
Bme18I GGWCC 2 cut(s) 106, 691
BmgT120I GGNCC 3 cut(s) 106, 318, 691
BmiI GGNNCC 1 cut(s) 478
BmrFI CCNGG 2 cut(s) 471, 482
BmsI GCATC 1 cut(s) 724
BpmI CTGGAG 1 cut(s) 239
BpuEI CTTGAG 1 cut(s) 231
BsaAI YACGTR 2 cut(s) 123, 359
BsaBI GATNNNNATC 1 cut(s) 618
BsaJI CCNNGG 4 cut(s) 96, 307, 469, 480
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 3 cut(s) 89, 357, 706
Bse21I CCTNAGG 1 cut(s) 602
Bse8I GATNNNNATC 1 cut(s) 618
BseBI CCWGG 2 cut(s) 471, 482
BseDI CCNNGG 4 cut(s) 96, 307, 469, 480
BseGI GGATG 3 cut(s) 527, 597, 619
BseJI GATNNNNATC 1 cut(s) 618
BseLI CCNNNNNNNGG 1 cut(s) 278
BseNI ACTGG 3 cut(s) 89, 357, 706
BseXI GCAGC 1 cut(s) 709
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 197
BsiSI CCGG 2 cut(s) 276, 321
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 2 cut(s) 757, 780
BspACI CCGC 3 cut(s) 104, 224, 719
BspANI GGCC 1 cut(s) 320
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 478
BspMI ACCTGC 1 cut(s) 564
BspQI GCTCTTC 1 cut(s) 273
BspTI CTTAAG 1 cut(s) 638
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 3 cut(s) 89, 357, 706
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 4 cut(s) 96, 307, 469, 480
BssMI GATC 2 cut(s) 757, 780
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 2 cut(s) 471, 482
Bst6I CTCTTC 1 cut(s) 273
BstAFI CTTAAG 1 cut(s) 638
BstBAI YACGTR 2 cut(s) 123, 359
BstDEI CTNAG 1 cut(s) 602
BstF5I GGATG 3 cut(s) 527, 597, 619
BstFNI CGCG 1 cut(s) 104
BstH2I RGCGCY 1 cut(s) 495
BstHHI GCGC 2 cut(s) 104, 494
BstKTI GATC 2 cut(s) 760, 783
BstMBI GATC 2 cut(s) 757, 780
BstMWI GCNNNNNNNGC 3 cut(s) 201, 272, 474
BstNI CCWGG 2 cut(s) 471, 482
BstSCI CCNGG 2 cut(s) 469, 480
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 709
Bsu36I CCTNAGG 1 cut(s) 602
BsuI GTATCC 1 cut(s) 87
BsuRI GGCC 1 cut(s) 320
BtsCI GGATG 3 cut(s) 527, 597, 619
BtsIMutI CAGTG 1 cut(s) 713
BveI ACCTGC 1 cut(s) 564
CfoI GCGC 2 cut(s) 104, 494
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 3 cut(s) 106, 318, 691
CseI GACGC 1 cut(s) 758
Csp6I GTAC 3 cut(s) 15, 251, 754
CviAII CATG 4 cut(s) 31, 745, 751, 776
CviJI RGCY 8 cut(s) 63, 204, 239, 259, 275, 320, 382, 477
CviKI_1 RGCY 8 cut(s) 63, 204, 239, 259, 275, 320, 382, 477
CviQI GTAC 3 cut(s) 15, 251, 754
DdeI CTNAG 1 cut(s) 602
DpnI GATC 2 cut(s) 759, 782
DpnII GATC 2 cut(s) 757, 780
DraIII CACNNNGTG 1 cut(s) 778
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 96
Eco32I GATATC 1 cut(s) 69
Eco47I GGWCC 2 cut(s) 106, 691
Eco47III AGCGCT 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 171
Eco72I CACGTG 2 cut(s) 123, 359
Eco81I CCTNAGG 1 cut(s) 602
EcoRI GAATTC 1 cut(s) 712
EcoRII CCWGG 2 cut(s) 469, 480
EcoRV GATATC 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 96
EcoT22I ATGCAT 1 cut(s) 739
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 4 cut(s) 34, 748, 754, 779
FaqI GGGAC 1 cut(s) 62
FatI CATG 4 cut(s) 30, 744, 750, 775
FauNDI CATATG 1 cut(s) 464
FbaI TGATCA 1 cut(s) 780
Fnu4HI GCNGC 1 cut(s) 698
FokI GGATG 3 cut(s) 534, 584, 626
Fsp4HI GCNGC 1 cut(s) 698
FspBI CTAG 1 cut(s) 201
GlaI GCGC 2 cut(s) 103, 493
GluI GCNGC 1 cut(s) 698
GsuI CTGGAG 1 cut(s) 239
HaeII RGCGCY 1 cut(s) 495
HaeIII GGCC 1 cut(s) 320
HapII CCGG 2 cut(s) 276, 321
HgaI GACGC 1 cut(s) 758
HhaI GCGC 2 cut(s) 104, 494
Hin1II CATG 4 cut(s) 34, 748, 754, 779
Hin6I GCGC 2 cut(s) 102, 492
HinP1I GCGC 2 cut(s) 102, 492
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 2 cut(s) 181, 506
HpaII CCGG 2 cut(s) 276, 321
HphI GGTGA 3 cut(s) 151, 708, 764
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 1 cut(s) 658
Hpy188III TCNNGA 3 cut(s) 47, 128, 575
Hpy8I GTNNAC 1 cut(s) 487
HpyAV CCTTC 4 cut(s) 146, 251, 410, 604
HpyCH4IV ACGT 2 cut(s) 122, 358
HpyCH4V TGCA 2 cut(s) 462, 737
HpyF10VI GCNNNNNNNGC 3 cut(s) 201, 272, 474
HpyF3I CTNAG 1 cut(s) 602
HpySE526I ACGT 2 cut(s) 122, 358
Hsp92II CATG 4 cut(s) 34, 748, 754, 779
HspAI GCGC 2 cut(s) 102, 492
Ksp22I TGATCA 1 cut(s) 780
Kzo9I GATC 2 cut(s) 757, 780
LguI GCTCTTC 1 cut(s) 273
LmnI GCTCC 2 cut(s) 200, 482
Lsp1109I GCAGC 1 cut(s) 709
LweI GCATC 1 cut(s) 724
MaeI CTAG 1 cut(s) 201
MaeII ACGT 2 cut(s) 122, 358
MaeIII GTNAC 3 cut(s) 118, 125, 770
MalI GATC 2 cut(s) 759, 782
MboI GATC 2 cut(s) 757, 780
MboII GAAGA 1 cut(s) 260
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 8 cut(s) 331, 339, 421, 455, 544, 587, 633, 712
MlyI GAGTC 1 cut(s) 500
MmeI TCCRAC 1 cut(s) 524
MnlI CCTC 4 cut(s) 135, 255, 272, 317
Mph1103I ATGCAT 1 cut(s) 739
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 2 cut(s) 639, 687
MslI CAYNNNNRTG 3 cut(s) 231, 361, 749
MspCI CTTAAG 1 cut(s) 638
MspI CCGG 2 cut(s) 276, 321
MspR9I CCNGG 2 cut(s) 471, 482
MvaI CCWGG 2 cut(s) 471, 482
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 3 cut(s) 201, 272, 474
NdeI CATATG 1 cut(s) 464
NdeII GATC 2 cut(s) 757, 780
NlaIII CATG 4 cut(s) 34, 748, 754, 779
NlaIV GGNNCC 1 cut(s) 478
NmuCI GTSAC 3 cut(s) 118, 125, 770
NsiI ATGCAT 1 cut(s) 739
PciSI GCTCTTC 1 cut(s) 273
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 699
PleI GAGTC 1 cut(s) 500
PmaCI CACGTG 2 cut(s) 123, 359
PmlI CACGTG 2 cut(s) 123, 359
PpsI GAGTC 1 cut(s) 500
Ppu21I YACGTR 2 cut(s) 123, 359
Psp6I CCWGG 2 cut(s) 469, 480
PspCI CACGTG 2 cut(s) 123, 359
PspGI CCWGG 2 cut(s) 469, 480
PspN4I GGNNCC 1 cut(s) 478
PspPI GGNCC 3 cut(s) 106, 318, 691
RsaI GTAC 3 cut(s) 16, 252, 755
RsaNI GTAC 3 cut(s) 15, 251, 754
RseI CAYNNNNRTG 3 cut(s) 231, 361, 749
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 2 cut(s) 639, 687
SatI GCNGC 1 cut(s) 698
Sau3AI GATC 2 cut(s) 757, 780
Sau96I GGNCC 3 cut(s) 106, 318, 691
ScaI AGTACT 1 cut(s) 252
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 2 cut(s) 471, 482
SduI GDGCHC 1 cut(s) 197
SfaNI GCATC 1 cut(s) 724
SinI GGWCC 2 cut(s) 106, 691
SmiMI CAYNNNNRTG 3 cut(s) 231, 361, 749
SmlI CTYRAG 2 cut(s) 246, 638
SmoI CTYRAG 2 cut(s) 246, 638
Sse9I AATT 8 cut(s) 331, 339, 421, 455, 544, 587, 633, 712
SsiI CCGC 3 cut(s) 104, 224, 719
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 2 cut(s) 469, 480
StyI CCWWGG 1 cut(s) 96
TaiI ACGT 2 cut(s) 125, 361
TaqI TCGA 4 cut(s) 179, 184, 328, 576
TasI AATT 8 cut(s) 331, 339, 421, 455, 544, 587, 633, 712
TatI WGTACW 1 cut(s) 250
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 2 cut(s) 639, 687
Tru9I TTAA 2 cut(s) 639, 687
TscAI CASTG 1 cut(s) 713
TseFI GTSAC 3 cut(s) 118, 125, 770
TseI GCWGC 1 cut(s) 697
Tsp45I GTSAC 3 cut(s) 118, 125, 770
TspDTI ATGAA 2 cut(s) 208, 462
TspGWI ACGGA 1 cut(s) 534
TspRI CASTG 1 cut(s) 713
Vha464I CTTAAG 1 cut(s) 638
VpaK11BI GGWCC 2 cut(s) 106, 691
XapI RAATTY 6 cut(s) 331, 421, 455, 587, 633, 712
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 1 cut(s) 201
ZrmI AGTACT 1 cut(s) 252
Zsp2I ATGCAT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.