pycom15g28830

Amino acid kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014351
Physical Location & Seq
Forward (+)
25127914 .. 25132114
4201 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1107 bp
ATGGCGGCAATTTCGCCCTCATCCTTTGTCTCTGTATCCTCCTCCACCACCTTCTGTTCGTTTTCATGTCCGTTTGTGAGTTGCTTGAAGCGCGCTTACGATGGCGTGTCGATGAGTAATCACCGCTCACATGGGCGGTTGGCGGCGGTTAGCTGCTCATCTTCTGAAATGGGCTCCGGTTCCGACTCCGTGAACCGCCGCAGTCATACTCAAATGTCATCTATGGCTCCCTTTGGGGTGACAATGAGTGGGAATGGCTCGTCTGGACCATCTTATAAGTGGCGAAGGGTTTTGCTTAAAGTAAGCGGAGAAGCACTTGCCGGGGATCATACACAGAACATTGACCCAAAGGTAACAATGGAAATTGCAAGGGAGGTTGCATCTGTGACTCGCCTTGGCATTGAGGTTGCAATTGTGGTTGGTGGGGGAAATATCTTCCGTGGATCTTCTTGGGTGGGAAGCAGCGGTCTTGACCAATCATCTGCTGATTACATCGGGATGCTGGCAACTGTCATGAACTCAATATTTCTTCAAGCAACAATGGAAAGTATCGGCATCCCTACTCGAGTGCAGACTGCTTTTCGCATGTCTGAGGTTGCAGAGCCTTATATACGTCGAAGAGCTGTAAGGCATTTGGAAAAGGGGAGGGTGGTCATCTTTGCAGCTGGAACTGGAAATCCGTTCTTCACCACAGATACTGCTGCAGCACTTCGTGGTGCAGAAATCAATGCAGAGGTTGTGCTGAAAGCAACAAATGTTGACGGGGTTTACGACAACGATCCAAGGTGTGACCCGAATGCCCGTCTTCTTGAGAATCTAACATATCAAGAGGTGATGGCAAAAGATCTTTCAGTAATGGACATGACTGCCATTACCTTATGCCAGACAAACAAAATTCCTGTTGTTGTGTTCAATCTAAACAAGCCCGGTAACATCTCAAAAGCGATAAAGGGGGAGAAGGTTGGCACGTTAATTTGTAAGGAGGGTGGTTTACCGCTGAAGCTGCATATATCTGCCGGTATTATATTATTACGGTTTCTAATGTCCTCTCATCTGGTTGTACAAATTCACAAGTTTCTGCTGACAAAAGGGGACGACGTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
AA_kinase

Protein Analysis

369

Amino Acids

39.39

Weight (kDa)

9.06

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_kinase PF00696 96 - 305 2.7e-36 Amino acid kinase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18680 AT3G18680
fragaria_vesca FvH4_1g24030
malus_domestica MD01G1011700.v1.1 MD15G1338200.v1.1
prunus_persica Prupe.6G157900_v2.0.a1 Prupe.6G157900_v2.0.a1
pyrus_communis pycom15g28830
rosa_chinensis RchiOBHm_Chr2g0120171
rosa_laevigata RLG00000018528
rosa_multiflora Rmu_sc0015469.1_g000003
rosa_roxburghii Rroxscaffold_2G00123650
rosa_rugosa Rorug02G0227300 Rorug02G0227400
rosa_samantha Rh2AG284000 Rh2DG309000
rosa_wichuraiana Rw2G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 276
AccBSI CCGCTC 1 cut(s) 126
AccII CGCG 1 cut(s) 93
AclWI GGATC 3 cut(s) 333, 451, 773
AcsI RAATTY 2 cut(s) 894, 1065
AcuI CTGAAG 1 cut(s) 1019
AdeI CACNNNGTG 1 cut(s) 713
AfaI GTAC 1 cut(s) 1062
AgsI TTSAA 3 cut(s) 88, 533, 913
AloI GAACNNNNNNTCC 2 cut(s) 661, 693
AluBI AGCT 4 cut(s) 153, 623, 665, 1003
AluI AGCT 4 cut(s) 153, 623, 665, 1003
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 3 cut(s) 333, 451, 773
AlwNI CAGNNNCTG 1 cut(s) 698
Ama87I CYCGRG 1 cut(s) 564
ApeKI GCWGC 6 cut(s) 153, 462, 662, 701, 704, 1003
ApoI RAATTY 2 cut(s) 894, 1065
AspLEI GCGC 2 cut(s) 93, 95
AspS9I GGNCC 1 cut(s) 266
AsuC2I CCSGG 2 cut(s) 322, 927
AsuHPI GGTGA 4 cut(s) 113, 250, 679, 844
AvaI CYCGRG 1 cut(s) 564
AvaII GGWCC 1 cut(s) 266
BanII GRGCYC 1 cut(s) 176
BarI GAAGNNNNNNTAC 2 cut(s) 80, 112
BbsI GAAGAC 1 cut(s) 797
BbvI GCAGC 6 cut(s) 140, 474, 674, 688, 716, 990
BccI CCATC 3 cut(s) 95, 277, 829
BciVI GTATCC 1 cut(s) 46
BcnI CCSGG 2 cut(s) 322, 927
BcoDI GTCTC 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 702
BfuI GTATCC 1 cut(s) 46
BglII AGATCT 1 cut(s) 844
BisI GCNGC 9 cut(s) 6, 144, 154, 199, 463, 663, 702, 705, 1004
BlsI GCNGC 9 cut(s) 7, 145, 155, 200, 464, 664, 703, 706, 1005
Bme1390I CCNGG 2 cut(s) 322, 927
Bme18I GGWCC 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 564
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 3 cut(s) 175, 181, 228
BmrFI CCNGG 2 cut(s) 322, 927
BmsI GCATC 3 cut(s) 389, 489, 564
BpiI GAAGAC 1 cut(s) 797
BpuEI CTTGAG 1 cut(s) 830
BpuMI CCSGG 2 cut(s) 322, 927
BsaJI CCNNGG 4 cut(s) 321, 394, 439, 782
BsaWI WCCGGW 1 cut(s) 176
Bse118I RCCGGY 1 cut(s) 1016
Bse1I ACTGG 1 cut(s) 676
BseDI CCNNGG 4 cut(s) 321, 394, 439, 782
BseGI GGATG 3 cut(s) 20, 504, 555
BseMII CTCAG 1 cut(s) 582
BseNI ACTGG 1 cut(s) 676
BsePI GCGCGC 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 6 cut(s) 140, 474, 674, 688, 716, 990
BsgI GTGCAG 2 cut(s) 590, 738
Bsh1236I CGCG 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 564
BsiSI CCGG 4 cut(s) 177, 321, 927, 1017
BsmAI GTCTC 1 cut(s) 34
BsmI GAATGC 1 cut(s) 802
BsoBI CYCGRG 1 cut(s) 564
Bsp1286I GDGCHC 1 cut(s) 176
Bsp1407I TGTACA 1 cut(s) 1060
Bsp143I GATC 4 cut(s) 325, 443, 778, 844
BspCNI CTCAG 1 cut(s) 583
BspFNI CGCG 1 cut(s) 93
BspHI TCATGA 1 cut(s) 513
BspLI GGNNCC 3 cut(s) 175, 181, 228
BspMAI CTGCAG 1 cut(s) 706
BspPI GGATC 3 cut(s) 333, 451, 773
BspQI GCTCTTC 1 cut(s) 613
BsrBI CCGCTC 1 cut(s) 126
BsrFI RCCGGY 1 cut(s) 1016
BsrGI TGTACA 1 cut(s) 1060
BsrI ACTGG 1 cut(s) 676
BssAI RCCGGY 1 cut(s) 1016
BssECI CCNNGG 4 cut(s) 321, 394, 439, 782
BssHII GCGCGC 1 cut(s) 91
BssMI GATC 4 cut(s) 325, 443, 778, 844
BssT1I CCWWGG 2 cut(s) 394, 782
Bst4CI ACNGT 2 cut(s) 511, 1035
Bst6I CTCTTC 1 cut(s) 613
BstAUI TGTACA 1 cut(s) 1060
BstC8I GCNNGC 2 cut(s) 93, 504
BstDEI CTNAG 1 cut(s) 591
BstDSI CCRYGG 1 cut(s) 439
BstF5I GGATG 3 cut(s) 20, 504, 555
BstFNI CGCG 1 cut(s) 93
BstHHI GCGC 2 cut(s) 93, 95
BstKTI GATC 4 cut(s) 328, 446, 781, 847
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 4 cut(s) 325, 443, 778, 844
BstMWI GCNNNNNNNGC 2 cut(s) 90, 1003
BstNSI RCATGY 1 cut(s) 589
BstSCI CCNGG 2 cut(s) 320, 925
BstSFI CTRYAG 1 cut(s) 702
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 6 cut(s) 140, 474, 674, 688, 716, 990
BstV2I GAAGAC 1 cut(s) 797
BstX2I RGATCY 2 cut(s) 443, 844
BstYI RGATCY 2 cut(s) 443, 844
BsuI GTATCC 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 439
BtsCI GGATG 3 cut(s) 20, 504, 555
Cac8I GCNNGC 2 cut(s) 93, 504
CaiI CAGNNNCTG 1 cut(s) 698
CciI TCATGA 1 cut(s) 513
CfoI GCGC 2 cut(s) 93, 95
Cfr10I RCCGGY 1 cut(s) 1016
Cfr13I GGNCC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 1061
CviAII CATG 6 cut(s) 66, 131, 514, 586, 862, 1104
CviJI RGCY 9 cut(s) 153, 174, 227, 258, 604, 623, 665, 925, 1003
CviKI_1 RGCY 9 cut(s) 153, 174, 227, 258, 604, 623, 665, 925, 1003
CviQI GTAC 1 cut(s) 1061
DdeI CTNAG 1 cut(s) 591
DpnI GATC 4 cut(s) 327, 445, 780, 846
DpnII GATC 4 cut(s) 325, 443, 778, 844
DraIII CACNNNGTG 1 cut(s) 713
Eam1104I CTCTTC 1 cut(s) 613
EarI CTCTTC 1 cut(s) 613
Eco130I CCWWGG 2 cut(s) 394, 782
Eco24I GRGCYC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 266
Eco57I CTGAAG 1 cut(s) 1019
Eco88I CYCGRG 1 cut(s) 564
EcoT14I CCWWGG 2 cut(s) 394, 782
EcoT38I GRGCYC 1 cut(s) 176
ErhI CCWWGG 2 cut(s) 394, 782
FaeI CATG 6 cut(s) 69, 134, 517, 589, 865, 1107
FatI CATG 6 cut(s) 65, 130, 513, 585, 861, 1103
Fnu4HI GCNGC 9 cut(s) 6, 144, 154, 199, 463, 663, 702, 705, 1004
FokI GGATG 3 cut(s) 7, 511, 542
FriOI GRGCYC 1 cut(s) 176
Fsp4HI GCNGC 9 cut(s) 6, 144, 154, 199, 463, 663, 702, 705, 1004
GlaI GCGC 2 cut(s) 92, 94
GluI GCNGC 9 cut(s) 6, 144, 154, 199, 463, 663, 702, 705, 1004
HapII CCGG 4 cut(s) 177, 321, 927, 1017
HhaI GCGC 2 cut(s) 93, 95
Hin1II CATG 6 cut(s) 69, 134, 517, 589, 865, 1107
Hin6I GCGC 2 cut(s) 91, 93
HinP1I GCGC 2 cut(s) 91, 93
HincII GTYRAC 1 cut(s) 760
HindII GTYRAC 1 cut(s) 760
HinfI GANTC 3 cut(s) 185, 388, 814
HpaII CCGG 4 cut(s) 177, 321, 927, 1017
HphI GGTGA 4 cut(s) 113, 250, 679, 844
Hpy166II GTNNAC 4 cut(s) 193, 760, 769, 992
Hpy188I TCNGA 3 cut(s) 166, 184, 592
Hpy188III TCNNGA 6 cut(s) 264, 470, 496, 514, 809, 827
Hpy8I GTNNAC 4 cut(s) 193, 760, 769, 992
Hpy99I CGWCG 2 cut(s) 618, 1100
HpyAV CCTTC 3 cut(s) 61, 279, 952
HpyCH4III ACNGT 2 cut(s) 511, 1035
HpyCH4IV ACGT 3 cut(s) 613, 968, 1098
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 1003
HpyF3I CTNAG 1 cut(s) 591
HpySE526I ACGT 3 cut(s) 613, 968, 1098
Hsp92II CATG 6 cut(s) 69, 134, 517, 589, 865, 1107
HspAI GCGC 2 cut(s) 91, 93
Kzo9I GATC 4 cut(s) 325, 443, 778, 844
LguI GCTCTTC 1 cut(s) 613
LmnI GCTCC 2 cut(s) 179, 232
Lsp1109I GCAGC 6 cut(s) 140, 474, 674, 688, 716, 990
LweI GCATC 3 cut(s) 389, 489, 564
MaeII ACGT 3 cut(s) 613, 968, 1098
MaeIII GTNAC 5 cut(s) 238, 352, 385, 788, 929
MalI GATC 4 cut(s) 327, 445, 780, 846
MbiI CCGCTC 1 cut(s) 126
MboI GATC 4 cut(s) 325, 443, 778, 844
MboII GAAGA 7 cut(s) 153, 427, 438, 521, 630, 676, 797
MfeI CAATTG 1 cut(s) 411
MflI RGATCY 2 cut(s) 443, 844
MhlI GDGCHC 1 cut(s) 176
MluCI AATT 6 cut(s) 9, 363, 411, 894, 972, 1065
MlyI GAGTC 2 cut(s) 179, 382
MmeI TCCRAC 1 cut(s) 207
MseI TTAA 2 cut(s) 297, 971
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 3 cut(s) 465, 665, 997
MspI CCGG 4 cut(s) 177, 321, 927, 1017
MspR9I CCNGG 2 cut(s) 322, 927
MunI CAATTG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 802
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 90, 1003
NciI CCSGG 2 cut(s) 322, 927
NdeII GATC 4 cut(s) 325, 443, 778, 844
NlaIII CATG 6 cut(s) 69, 134, 517, 589, 865, 1107
NlaIV GGNNCC 3 cut(s) 175, 181, 228
NmuCI GTSAC 3 cut(s) 238, 385, 788
NspI RCATGY 1 cut(s) 589
PaeR7I CTCGAG 1 cut(s) 564
PagI TCATGA 1 cut(s) 513
PauI GCGCGC 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 613
PcsI WCGNNNNNNNCGW 1 cut(s) 768
PctI GAATGC 1 cut(s) 802
PfeI GAWTC 1 cut(s) 814
PkrI GCNGC 9 cut(s) 7, 145, 155, 200, 464, 664, 703, 706, 1005
PleI GAGTC 2 cut(s) 179, 382
PpsI GAGTC 2 cut(s) 179, 382
PsiI TTATAA 1 cut(s) 276
PspN4I GGNNCC 3 cut(s) 175, 181, 228
PspPI GGNCC 1 cut(s) 266
PspXI VCTCGAGB 1 cut(s) 564
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 2 cut(s) 443, 844
PteI GCGCGC 1 cut(s) 91
PvuII CAGCTG 1 cut(s) 665
RsaI GTAC 1 cut(s) 1062
RsaNI GTAC 1 cut(s) 1061
RseI CAYNNNNRTG 1 cut(s) 497
SapI GCTCTTC 1 cut(s) 613
SaqAI TTAA 2 cut(s) 297, 971
SatI GCNGC 9 cut(s) 6, 144, 154, 199, 463, 663, 702, 705, 1004
Sau3AI GATC 4 cut(s) 325, 443, 778, 844
Sau96I GGNCC 1 cut(s) 266
SchI GAGTC 2 cut(s) 179, 382
ScrFI CCNGG 2 cut(s) 322, 927
SduI GDGCHC 1 cut(s) 176
SfaNI GCATC 3 cut(s) 389, 489, 564
SfcI CTRYAG 1 cut(s) 702
Sfr274I CTCGAG 1 cut(s) 564
SinI GGWCC 1 cut(s) 266
SlaI CTCGAG 1 cut(s) 564
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 2 cut(s) 564, 809
SmoI CTYRAG 2 cut(s) 564, 809
Sse9I AATT 6 cut(s) 9, 363, 411, 894, 972, 1065
SspI AATATT 1 cut(s) 525
StyD4I CCNGG 2 cut(s) 320, 925
StyI CCWWGG 2 cut(s) 394, 782
TaaI ACNGT 2 cut(s) 511, 1035
TaiI ACGT 3 cut(s) 616, 971, 1101
TaqI TCGA 3 cut(s) 110, 565, 616
TasI AATT 6 cut(s) 9, 363, 411, 894, 972, 1065
TatI WGTACW 1 cut(s) 1060
TauI GCSGC 3 cut(s) 8, 146, 201
TfiI GAWTC 1 cut(s) 814
Tru1I TTAA 2 cut(s) 297, 971
Tru9I TTAA 2 cut(s) 297, 971
TseFI GTSAC 3 cut(s) 238, 385, 788
TseI GCWGC 6 cut(s) 153, 462, 662, 701, 704, 1003
Tsp45I GTSAC 3 cut(s) 238, 385, 788
TspDTI ATGAA 2 cut(s) 54, 530
TspGWI ACGGA 4 cut(s) 60, 178, 428, 669
VpaK11BI GGWCC 1 cut(s) 266
XapI RAATTY 2 cut(s) 894, 1065
XceI RCATGY 1 cut(s) 589
XcmI CCANNNNNNNNNTGG 1 cut(s) 276
XhoI CTCGAG 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.