pycom15g29460

phagosome-lysosome fusion involved in apoptotic cell clearance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0003216
Physical Location & Seq
Forward (+)
26285019 .. 26310131
25113 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 8682 bp
ATGAACTGTTTATACAAGTGCTCCAGAGTGTTTTCAAGCAATTCACATTGCTTTATTGGATTTGTTTTCACACAGGTTGATCCTGTAACTTTGAATACTAGTGATGAAAGTGAAATTACTAAGAAAAATAATGTACTTCTGGTTGCTAGATTAGATAGGCGGGGAATTCAGTGTGTTTCCTCAGTGAAGCTTGACGAGTGTCCAATTATTGGCTCAGTGGTACAATGGACAGACTTCCAGTTTTCTGATAGCCTTCTTATTTGTCTAAATGCATCTGGCTTAGTTGTTTTCTATGGAGTAATGTCCGGTGAGTATGTTGCACATTTAGGTATTTCACAGACTTTAGGACTCAACCCTCAGTTGGATTTTCATAAGCAAGGAGCATTGTCTCTAGGTTCTGAGAAGCACAGTACTGAATTTGATGGAGTTGATGACAAAAGAGTTTTGCAACATGGTGATTATTCTGATAGGAGAATGTTTAAAAGGTTGATTGCTGCTTCACATACCTCCCTAATAGCTGTTGTTGATGATTATGGTGTAATATATGTGATTTCAGCTGGTGACTATATACCGGGCATGTATTATGAAAATGAGAAATTACTTCCACATATTCAGCAGCAAAGGCTAGGCATGTTGGGTGGTTGGGAGGTTGGTGGTTGTGATATAGGTCACCAAAGGGTATATTCTAACATATCTGGTTCACAGAATTCTATTGTTCAATCCATGGCAAATGACAGATCTTCTTTCCCGGATGATTGTGGAAGTAATGTGCTTAGAAACCAAGAGTTGGACCGTAAGCAAGAAGGGAAGGGATCCAGCTCATTTTTGGGTAGATTTTCTGCTTCAAAATTAACAGATCATAAGCCTTACTACTCTGAAAATAAGCCACACTTGATGCGCAAGATCTTTCTTCCCCCACATAAGTTTAGGGAATATGATCCTATCTGTTTCTCTCCATTAGGAATTACTCGGCTTGTTAAGAACCGGAATATGATGAACCCGAAGGGTTCTCACATTGTTCATCTCAATCTGCACGCTGAGTTCGTAGTTTGTGATGACAACTTTTTGAATACACGGTGTGAAATGTTTTATCTCCAAGGGAGGGAAGAAGCCTTTATTGGAGAGGCAGTGGGCTGCACTTTCCAGGGATGTTTTTATTTGGTAACAGAAAGTGGTCTTTCAGTAGTGCTTCCTTCTGTATCAGTCTCATCAAATTTTCTTCCTCTTGAAGTTATTGGGTGTGGGCAGTTGACCAATTCGGGCACCGGAGATAAAGTTAAAAGCACAAGGGAAATGAAAGAATCTCAACAGCCTTGGTCACCCTGGAATGTTGAAATTTTGGACAGAGTCCATTTGTATGAAAGTGCTGAAGAGGCAGATCGCTTGTGTTTGGAAAACGGATGGAACCTGAAAGTATCTCGGATGCATCGACTTCAGTTGGCATTGGACTACTTGAAATTTGATGAGATAGAACGATCATTAGAAATGCTTGTTGGTGTCAATTTGGCAGAAGAAGGAGTATTAAGGTTACTCTTTGCTGCTGTGTATCTGATGCTTCATAAAGTTGGCAATGATAATGAGGTTTCTGCTGCATCAAGGCTTCTTGCGTTAGCAACTTGCTTTGCAACCAAAATGATTCGTAAGTATTGGTTGGTTGAACATAAGAAAGATGCATATGAATATGATAGGACCCAGATGCTTTCACTTCTGCCAGTTTTACCAGAAAAGGTACAAGATGAAGTGGAAAATTCAAGAAGACTTTGTGAGATGGCTCAATTTTTGGAGATAATACGAAACCTGCAATCTCGACTTGGTTCAAAATATAAGAGACCGGGCAGAGAATTGGTGGACAGTGGGGAAACATCGGCACTACTAGACAATGGTTTATCACAGGATGAATCTCAGTTGATAGTTGTTTCTGTAGACCCCGTATCTTTGGAGACATCAGAACAACAAGACTTTCCTGTATCTACATCTGCCTTTAACTATTCTGAGAATCTTGCATTGACACCTGTGGATCCTGCAGTGCATTTGGACCCGGAGGATTTGAGTGAAGTATCTCTTGTGCCACGAGGGGGGTTCTTAGAGAAGAAAATTCTTCCCTTGGAAAATCCCAAAGAGATGATAGCACGCTGGAAAATAGATAATTTAGACCTCAAGGCAGTAGTCAATGATGCTTTACTCACTGGTCGTCTCCCCTTAGCAGTTCTTCAACTCCATCTTCATCGTTCAAGAGATTCAGTTCCTGGAAAAGAGCCTCATGATACTTTCACTGAAGTCCGTGATATTGGAAGAGCTATTGCTTATGACCTATTTTTGAAGGGTGAATCTGGACTTGCTGTGGCCACATTGCAAAGGCTTGGAGAGGATGTAGAAGCTAGCCTCAAGCAGTTATTATTTGGTACAGTAAGAAGATATTTACGAGTGCAAATCACTGAAGAGATGAATAGATATGGCTACCTGGGCCCATACGAGTGGAAGATATTGGATAGGATATCCCTCATTGAGAGACTTTACCCTAGCAGTAGTTTCTGGAAAACACTTCACGGACGGCAGAAAGAATTCATTAGAGTTCCAGCCTGTTCAAGTTTGCCTAAGAGATATTATTTGCGCCTGTTGCATTCACATGCATTCAACAATTCTACCATTGAGTGCGATGACATTGATGGAGTTGTTTTTGGTTCATGGGCAAATGTCAATGAAAATCCTTCTGTTCGTATGGTTGATGAAGATAGTGCTTATGCTGGATACTGGGCTTGTGCTGCTGTATGGTTTAGTTTCTATGACCAAAGAACCATTGAACGGATAGTCTTGGATCAGCCATCTTTTATGGGTGTGCATGTATTGTGGGAATCACAGCTTGAGTACCATGTATGCCACAGCGACTGGGAGCAAGTCTCTAGACTCCTGGACCTTATTCCACCACAATTTTTAGCAGTTGGAAGCCTCCAAGTCAGCTTGGATGGGTTACAGCCTGTTTCAAATGTTGGATGCAGTAGGGGATCTGATTATGGTGCTTACCTGTGCTCTATTGAAGAATTGGATGCTGTCTGCATGGATGTTCCAGAAATCAAAGTTTTCAGGTTTTCATGTCATAATATGTCCTCCATATGGTTAAGGATGCTAATGCAAGAGAAACTTGCGAGAAGCTTTATTTTCTTAAAGGAATATTGGGAAGGCACTGCTGATATATTACTTCTGCTTGCCCGTTCTGGCTTCATTACTAGCAAGTATGAAGTACCTTCCAAGGATGATAAGATTGAGAGTTTATCAGTCCCTCAATTTCCAGATGAACGTGGAAAATTTCATGTCGGGACCTTGCAAGCCTTGCATAAGCTACTCATACATCATTGTGCGCAGTATAACTTGCCATACCTTCTGGACCTTTACCTGGACCAGCATGAGTTGTTACAAGATAATAATTCATATGCATCATTACAGGAAGCTGCGGGAGATTGTGAATGGGCAAGATGGTTGCTCCTCTCTAGGGTAAAGGGGTGTGAGTATGAAGCATCATTTTCTAATGCTCGCGCGATCATGTCACGCAATCTAGTTCCTGGAAGTAACCTAAGCGTTCCAGAGATGGATGAAATAATTCGTACCGTTGATGACATTTCTGAAGGAGGGGCAGAATTGGCAGCTGTGGCAACCTTAATGTATGCTTCTGTCCCAATTCAAAGTTGTCTGAGTAGTGGTAGTGTAACGAGGCATAGCAGCACATCAGCCCAGTGCACACTAGAGAATCTTAGGCCTACTCTTCAGCGTTTCCCTACATTGTGGCAATCATTTGTATCAGCATGTTTTGGGCATGATCCCATTTCCAGTTTTTGGGGGCCTAAGGCAAATAATGATTATATAAATTGGCGCTGCAAAATATTTTTCTCTTCTGGATGTGATACATCACTTCGACAAATGCTGCCATGCTGGTATCCTAAGCCTCTACGGAGACTGATTCAGCTTTATGTGCAGGGTCCTCTTGGATGGCAAACAGTGTCAGGTCTGCCAATAGGAGAAGGTTTGTTACACAGAGATGCAGAGTTTTTCATAAACGCTGATGAGGATACTGAGTTCAGCGCAATCTCCTTGGAAGCTGCCATCCAAAAACACATTCAGGAGGAACTCTATAATTCTGCGCTTGAGGAAAACTCACTTGGCTTGGAGCACCATTTACATCGTGGACGTGCACTAGCAGCTTTTAATCATTTACTTACTGCGAGAATTCAAAAACTAAAGTCAGAAAGGCAAGCACATGGACAAACAAATGTTCAAGCAGATGTTCAAACACTTCTTGGACCTATAAAAGAAAGTGAAAAGTCTCTTCTTGCATCTGTTGTGCCATTTGCAATTATGCATTTTGAGGATTCTGTGTTGGTGGCATCATGTGCTCTCCTCCTGGAGCTTTGTGGCTTTTCTGCCAGCATGCTCCGCATAGACATTGCAGCCTTGAGACGGATATCTTCTTTCTACAAATCGAATGAAAATATTGAGAGCTTAAGGCAACTTCCAACCAAGAGTTCTGAATTTCATGCAGTTAGCCATGAAAGTGATATAACAGTATCTATCGCTCGAGCTCTAGCAGATGAATATCTGCACCAGGATATTTCAAGAAATAGTAAGCAAAAGGGTACTCCAAATGTAGCTGCTGGTAAACAATCTTCACGAGCTCTCATGCTTGTTTTACATCACTTGGAAAAAGCTAGCCTTCCTCAAACGGTGGATGTAAAGACATGTGGTTCTTGGCTTTTGAGTGGCAATGGTGATGGAATGGAGTTAAGATCTAAACAGAAAGCTGCAAGCCATCACTGGAATTTAGTTACAGTTTTTTGTCAGATGCATCACCTTCCCTTGAGTACAAAATACCTTTCTGTATTGGCAAGAGACAACGATTGGGTCGGATTTTTGTCGGAAGCTCAGATTGGAGGATATCCTTTTGATACGGTGGTCCAAATGGCATCAAAGGAGTTTAATGATCCACGTCTCAAAATTCATATTTCAACAGTTTTGAAAGGCATGCAGTTAAGAAGAAAAGCTAGCTCCTCCTCATATATAGATACTACAGAAAAGAATAGTGAAGTGTCCTTTCCAGAAGAAAACATTTGTGTCCCAGTCGAACTCTTTAGAATATTAGCAGAATGTGAAAAGCAGAAATTTCCTGGAGAGGCCATTTTGTTGAAAGCGAAGGAGTTGTCCTGGTCAATTTTGGCAATGATTGCCTCTTGCTTTTCAGATGTGTCTCCGATATCTTGCCTAACAGTATGGCTGGAAATTACTGCTGCAAGGGAAACTTCTTCTATTAAGGTGAATGATATTGCTTCCAGAATTGCAAGAAATGTTGGAGCAGCCGTAGAAGCTACTAATTCCCTTCCAGCAGGAAGTAAAGGCATGTGTTTTCATTACAATAGGAAAAATTCAAAACGAAGGCGGCTTTTGGAGCCCATCTCAAGAGATCCCTCAGATGCTTCAATTTCTAATATTTCAAATTCTCTTCCGTGTGCAAATATATTTGATTCCCCGGGCCTTATTTCTAAAGGAGAAAGAAAGATAGAACTTGGGGAAAGTATGAATGTTTCCAGTGATTCTGAGGAAGGGCCTGCTTTGCTGTCCAAGATGGTTGCAGTGCTTTGTGAGCAACACTTGTTCCTGCCTTTGTTAAGGGCATTTGAAATGTTCCTTCCGTCATGTTCTCTCTTACCTTTCATACGTGCTCTCCAGGCATTTTCACAAATGCGCCTATCTGAAGCCTCAGCGCACTTGGGTTCATTTTCTGCCCGAATTAAAGAAGAATCAACACGCCTGCCAGTAAATGTTGGACGAGAAGCGCAGATTGGTACATCATGGATCAGCTTCACCGCCATTAAAGCTGCAGATTCAATGCTTTTGACATGTCCATCTCCTTACGAGAAAAGATGTTTACTGCAACTGCTTGCTTCAACTGATTTTGGTGATGGAGGGTCCGCAGCAATATACTACCGACGTCTTTATTGGAAAATTAATTTAGCAGAGCCATTATTACGCAAGGATGACACTTTACATCTTGGGAGCGAGACTTTAGATGATGTTTCCCTTGCAATGGGACTGGAGAATAACAGGCACTGGGAGCAGGCACGGAACTGGGCCAGACAGTTGGAGGCCAGTGGTGCACCTTGGAAATCTGCTGTTCATCGTGTAACTGAAAATCAGGCTGAATCAATGGTAGCTGAATGGAAGGAGTTTCTTTGGGATGTTCCAGAGGAGAGAATTGCATTATGGGGCCATTGCCAAACGTTGTTCATCAGATACTCTTTCCCAGCTTCACAGGCTGGGTTATTTTTCCTGAAACATGCAGAAGCTTTGGAAAAAGATCTTCCAGCTAGAGAGCTTCATGAGCTGTTGCTGCTTTCTCTACAATGGTTAAGCGGGATGATAACCCTGTCCAGTCCAGCTTATCCACTTCATCTTATTCGAGAAATCGAGACTAAAGTGTGGCTCTTGGCAGTAGAATCAGAAGCACACATTAAGGATGAAGGAGACTTCAATTTAAGCAGTTCTAGCCGTGACCCAATTATGAAAAATAGCTCCAGTATTATTGACCGGACTGCATGTCTAATAACAAAAATGGACAATCATGTTGGTACATTTAAGAATAGAACGGTTGAGAAACATGATCTAAGAGAAAATAACCAGGCACATAACAAGAACTATGTATTAGATACTAGCTTTCCAATGACCACAGGGGGGAGTACAAAGACTAAGCGGAGGACAAAAGGCTACGGGCCGTTAAGACGGCCACCACTTGATGCGGTCGAGAAGCACACTGATCTTCATGATGGTTCCAACCCTCCCAACGTTAGAAGTGATTTACAATCTCAGGACGAAAACATAAAAATGGAAATGTCTTTTTCACGATGGGAGGAAGGGGTAGGACCAGCAGAGCCAGAAAGTGCTGTTCTTTCCTTATTGGAATTTGGACAAATAGCAGCTGCAAAGCAACTCCAGCATAAGCTATCTCCAGATAAAATCCCATATGAATTTGTAGTTGTGGATGCTGCATTGAAACTTGCAGGAATGTCTTCAAGTAAGAAAGTATCCTTATCAATGCTAGATGAGGAGGTGTGTTCTGTTATGCAATCGTACAACATACTGAATGAACAGCATCAAGTTGACCCAGTGCAGGTTTTGGAGAGTCTTGCAACCAATCTTTCTGAAGGTTGTGGGCGTGGAATTTGCAAGAAGATAATAGCAGTCGCCAAAGCTGCAACCATCTTAGGCATTTCATTTTCCGAGGCATTTGATAAGCAGCCAATTGAATTACTACAGCTACTTTCCCTTAAAGCACAGGAGTCATTTGAGGAGGCGCATCTCCTTGTAAGAACTCATTCAATGCCAGCGGCCAGTATTGCTCAAATTCTTGCAGAATCCTTTCTAAAGGGCTTATTGGCTGCTCATCGTGGAGGGTATATGGATTCTCAAAAGGAAGAAGGACCTGCTCCTTTATTGTGGAGATTTTCAGACTTCTTGAAGTGGGCAGAGCTTTGCTCTTCTGAGCAAGAAATTGGACATGCATTGATGCGTTTGGTTATTACCGGACAAGAAGTACCACATGCCTGTGAGGTTGAGCTTCTAATTTTGTCCCACCACTTCTACAAATTATCATCTTGCCTTGATGGAGTTGATGTTCTTGTAGCCCTCGCAGCTACTAGGGTAGAAGCGTATGTCTCTGAGGGTGATTTTTCATGTTTGGCCCGTCTCATAACTGGAGTAGGAAACTTCCATGCCCTCAATTTCATTCTTGGAATTCTGATAGAAAATGGTCAACTGGATCTCCTTCTTCAGAAGTATTCTGCTGCAGCAGATGCAAGTTCTGGCACTGCTGAGGCTGTTAGGGGGTTTCGAATGGCTGTTCTCACATCACTCAAGCATTTCAATCCAAATGACCTTGATGCCTTTGCTATGGTCTACAATCATTTTGACATGAAACATGAAACGGCTGCTCTCTTAGAGTCACGAGCGGAGCAGTCATCTGAGCAGTGGTATGGCCGTTATGACAAGGATCAGAATGAAGATCTTTTAGACTCTATGCGGTTTTACATTGAAGCTGCTGAAGTTCACAAATCCATCGATGCTGGCAACAAAACACGCGCTGCATGCGCTCAGGCTTCCCTTGTGTCCCTTCAAATTCGAATGCCTGACTTCCAGTGGCTGTACCGTTCGGAAACCAATGCCAGGCGGGCCCTTGTTGAACAGTCTCGTTTTCAAGAAGCCCTCATTGTTGCTGAAGCCTATGGCCTTAATCAGCCAAGTGAGTGGGCTTTGGTACTTTGGAACCAGATGCTGAAACCGGAAGTAATGGAAGAGTTTGTGGCTGAATTTGTGGCCGTTCTTCCTCTCCAGCCTTCGATGCTTGCTGATCTAGCAAGATTTTATAGGGCAGAGGTGGCAGCGAGAGGGGACCAATCCCAATTCTCGGTTTGGCTAACGGGGGGAGGGTTGCCAGCTGAATGGGCCAAGTATCTGGGGAGGTCGTTTAGATGCTTGTTGAGAAGGACGAGAGATTTGAAGCTACGGTTACAACTGGCTACTGTGGCTACTGGCTTTGGGGATGTCATCGATGCATGCATGAACGCATTAGATAGGGTTCCGGACAATGTTGGACCACTTGTACTCAGGAAAGGTCATGGTGGCGCTTATCTCCCGCTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spatacsin_C

Protein Analysis

2894

Amino Acids

324.16

Weight (kDa)

5.78

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Spatacsin_C PF14649 2511 - 2802 3.1e-73 Spatacsin C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 5977
Acc16I TGCGCA 2 cut(s) 899, 3357
Acc36I ACCTGC 3 cut(s) 1806, 7141, 7471
AccB1I GGYRCC 1 cut(s) 1262
AccB7I CCANNNNNTGG 3 cut(s) 209, 787, 3828
AccBSI CCGCTC 1 cut(s) 7988
AccI GTMKAC 2 cut(s) 1923, 7935
AccII CGCG 3 cut(s) 3531, 3533, 8118
AccIII TCCGGA 1 cut(s) 8617
AclI AACGTT 2 cut(s) 6263, 6825
AcoI YGGCCR 5 cut(s) 2343, 6764, 7368, 8014, 8352
AcyI GRCGYC 1 cut(s) 5974
AdeI CACNNNGTG 1 cut(s) 1079
AflII CTTAAG 1 cut(s) 4492
AflIII ACRYGT 2 cut(s) 4727, 5882
AhdI GACNNNNNGTC 1 cut(s) 6579
AhlI ACTAGT 1 cut(s) 98
AjiI CACGTC 2 cut(s) 4181, 4976
AloI GAACNNNNNNTCC 4 cut(s) 4052, 4084, 7638, 7670
Alw44I GTGCAC 3 cut(s) 3730, 4182, 6138
AlwNI CAGNNNCTG 5 cut(s) 2246, 2886, 6093, 8179, 8311
Ama87I CYCGRG 2 cut(s) 4566, 5512
Aor13HI TCCGGA 1 cut(s) 8617
ApaI GGGCCC 2 cut(s) 2468, 8212
ApaLI GTGCAC 3 cut(s) 3730, 4182, 6138
ArsI GACNNNNNNTTYG 4 cut(s) 5171, 5203, 8515, 8547
AseI ATTAAT 1 cut(s) 5991
Asp700I GAANNNNTTC 5 cut(s) 2561, 3594, 7048, 7354, 7398
AsuC2I CCSGG 6 cut(s) 573, 749, 1833, 2039, 5513, 5514
AsuII TTCGAA 2 cut(s) 7870, 8158
AsuNHI GCTAGC 3 cut(s) 2378, 4697, 5030
AvaI CYCGRG 2 cut(s) 4566, 5512
AxyI CCTNAGG 1 cut(s) 3837
BaeGI GKGCMC 6 cut(s) 1265, 2468, 3734, 4186, 6142, 8212
BaeI ACNNNNGTAYC 2 cut(s) 4926, 4959
BalI TGGCCA 1 cut(s) 2345
BamHI GGATCC 2 cut(s) 812, 2017
BanI GGYRCC 1 cut(s) 1262
BanII GRGCYC 5 cut(s) 2468, 4573, 4666, 5436, 8212
BarI GAAGNNNNNNTAC 4 cut(s) 4005, 4037, 4639, 4671
BauI CACGAG 3 cut(s) 2070, 4659, 7983
BbsI GAAGAC 2 cut(s) 1762, 7041
BbvCI CCTCAGC 2 cut(s) 5743, 7851
BceAI ACGGC 8 cut(s) 2567, 5327, 6516, 6739, 6779, 7980, 8001, 8339
BciVI GTATCC 4 cut(s) 2741, 3939, 4054, 7075
BcnI CCSGG 6 cut(s) 573, 749, 1833, 2039, 5513, 5514
BcuI ACTAGT 1 cut(s) 98
BfmI CTRYAG 6 cut(s) 1920, 2022, 5055, 5862, 7292, 7824
BfoI RGCGCY 2 cut(s) 3868, 8664
BfrI CTTAAG 1 cut(s) 4492
BfuAI ACCTGC 3 cut(s) 1806, 7141, 7471
BfuI GTATCC 4 cut(s) 2741, 3939, 4054, 7075
BglI GCCNNNNNGGC 1 cut(s) 8207
BglII AGATCT 5 cut(s) 737, 903, 4775, 6340, 8041
BmcAI AGTACT 1 cut(s) 412
BmeRI GACNNNNNGTC 1 cut(s) 6579
BmeT110I CYCGRG 2 cut(s) 4566, 5512
BmgBI CACGTC 2 cut(s) 4181, 4976
BmrI ACTGGG 7 cut(s) 2761, 2896, 3721, 5099, 6103, 6121, 7139
BmtI GCTAGC 3 cut(s) 2382, 4701, 5034
BmuI ACTGGG 7 cut(s) 2761, 2896, 3721, 5099, 6103, 6121, 7139
BoxI GACNNNNGTC 1 cut(s) 198
BpiI GAAGAC 2 cut(s) 1762, 7041
BplI GAGNNNNNCTC 8 cut(s) 2882, 2914, 4130, 4162, 5423, 5455, 7499, 7531
Bpu10I CCTNAGC 6 cut(s) 2200, 3569, 3933, 5743, 7851, 8130
Bpu14I TTCGAA 2 cut(s) 7870, 8158
BpuEI CTTGAG 8 cut(s) 2141, 2369, 2882, 4157, 4465, 4867, 5425, 7877
BpuMI CCSGG 6 cut(s) 573, 749, 1833, 2039, 5513, 5514
Bsa29I ATCGAT 2 cut(s) 8097, 8586
BsaAI YACGTR 1 cut(s) 5702
BsaBI GATNNNNATC 1 cut(s) 4584
BsaHI GRCGYC 1 cut(s) 5974
BsaI GGTCTC 1 cut(s) 1822
BsaWI WCCGGW 7 cut(s) 305, 984, 1265, 6570, 7562, 8317, 8617
Bse21I CCTNAGG 1 cut(s) 3837
Bse3DI GCAATG 8 cut(s) 46, 1576, 2348, 4434, 4759, 5211, 6075, 6253
Bse8I GATNNNNATC 1 cut(s) 4584
BseAI TCCGGA 1 cut(s) 8617
BseCI ATCGAT 2 cut(s) 8097, 8586
BseJI GATNNNNATC 1 cut(s) 4584
BseMI GCAATG 8 cut(s) 46, 1576, 2348, 4434, 4759, 5211, 6075, 6253
BseRI GAGGAG 7 cut(s) 3470, 4379, 5026, 5029, 6245, 7100, 7343
BseSI GKGCMC 6 cut(s) 1265, 2468, 3734, 4186, 6142, 8212
BseYI CCCAGC 2 cut(s) 6286, 6299
BsgI GTGCAG 5 cut(s) 1016, 1120, 3986, 4574, 7169
Bsh1236I CGCG 3 cut(s) 3531, 3533, 8118
Bsh1285I CGRYCG 1 cut(s) 6783
BshNI GGYRCC 1 cut(s) 1262
BshVI ATCGAT 2 cut(s) 8097, 8586
BsiEI CGRYCG 1 cut(s) 6783
BsiHKCI CYCGRG 2 cut(s) 4566, 5512
BslFI GGGAC 8 cut(s) 3260, 3328, 3653, 5087, 6087, 7594, 8131, 8441
BsmBI CGTCTC 4 cut(s) 2198, 4441, 4982, 7730
BsmFI GGGAC 8 cut(s) 3260, 3328, 3653, 5087, 6087, 7594, 8131, 8441
BsmI GAATGC 3 cut(s) 2620, 2630, 8166
Bso31I GGTCTC 1 cut(s) 1822
BsoBI CYCGRG 2 cut(s) 4566, 5512
Bsp119I TTCGAA 2 cut(s) 7870, 8158
Bsp120I GGGCCC 2 cut(s) 2464, 8208
Bsp13I TCCGGA 1 cut(s) 8617
Bsp19I CCATGG 1 cut(s) 723
BspDI ATCGAT 2 cut(s) 8097, 8586
BspEI TCCGGA 1 cut(s) 8617
BspFNI CGCG 3 cut(s) 3531, 3533, 8118
BspHI TCATGA 3 cut(s) 2260, 6361, 6802
BspMAI CTGCAG 3 cut(s) 2026, 5866, 7828
BspMI ACCTGC 3 cut(s) 1806, 7141, 7471
BspOI GCTAGC 3 cut(s) 2382, 4701, 5034
BspQI GCTCTTC 2 cut(s) 2287, 7522
BspT104I TTCGAA 2 cut(s) 7870, 8158
BspT107I GGYRCC 1 cut(s) 1262
BspTI CTTAAG 1 cut(s) 4492
BspTNI GGTCTC 1 cut(s) 1822
BsrBI CCGCTC 1 cut(s) 7988
BsrDI GCAATG 8 cut(s) 46, 1576, 2348, 4434, 4759, 5211, 6075, 6253
BssNI GRCGYC 1 cut(s) 5974
BssSI CACGAG 3 cut(s) 2070, 4659, 7983
BssT1I CCWWGG 7 cut(s) 723, 1096, 1313, 2103, 3246, 4083, 6143
Bst2BI CACGAG 3 cut(s) 2070, 4659, 7983
Bst6I CTCTTC 9 cut(s) 1365, 2287, 2433, 3762, 3889, 4323, 5490, 7522, 8325
BstACI GRCGYC 1 cut(s) 5974
BstAFI CTTAAG 1 cut(s) 4492
BstAPI GCANNNNNTGC 4 cut(s) 3328, 4382, 5210, 7832
BstBAI YACGTR 1 cut(s) 5702
BstBI TTCGAA 2 cut(s) 7870, 8158
BstDSI CCRYGG 1 cut(s) 723
BstEII GGTNACC 2 cut(s) 668, 1317
BstFNI CGCG 3 cut(s) 3531, 3533, 8118
BstH2I RGCGCY 2 cut(s) 3868, 8664
BstMCI CGRYCG 1 cut(s) 6783
BstPAI GACNNNNGTC 1 cut(s) 198
BstPI GGTNACC 2 cut(s) 668, 1317
BstSFI CTRYAG 6 cut(s) 1920, 2022, 5055, 5862, 7292, 7824
BstSLI GKGCMC 6 cut(s) 1265, 2468, 3734, 4186, 6142, 8212
BstUI CGCG 3 cut(s) 3531, 3533, 8118
BstV2I GAAGAC 2 cut(s) 1762, 7041
BstXI CCANNNNNNTGG 5 cut(s) 2475, 6124, 8283, 8478, 8491
Bsu15I ATCGAT 2 cut(s) 8097, 8586
Bsu36I CCTNAGG 1 cut(s) 3837
BsuI GTATCC 4 cut(s) 2741, 3939, 4054, 7075
BsuTUI ATCGAT 2 cut(s) 8097, 8586
BtgI CCRYGG 1 cut(s) 723
BtgZI GCGATG 1 cut(s) 2670
BtrI CACGTC 2 cut(s) 4181, 4976
BtsI GCAGTG 6 cut(s) 1134, 2031, 3180, 5622, 7845, 8012
BveI ACCTGC 3 cut(s) 1806, 7141, 7471
CaiI CAGNNNCTG 5 cut(s) 2246, 2886, 6093, 8179, 8311
CciI TCATGA 3 cut(s) 2260, 6361, 6802
Cfr9I CCCGGG 1 cut(s) 5512
ClaI ATCGAT 2 cut(s) 8097, 8586
DraI TTTAAA 1 cut(s) 481
DraIII CACNNNGTG 1 cut(s) 1079
DriI GACNNNNNGTC 1 cut(s) 6579
EaeI YGGCCR 5 cut(s) 2343, 6764, 7368, 8014, 8352
Eam1104I CTCTTC 9 cut(s) 1365, 2287, 2433, 3762, 3889, 4323, 5490, 7522, 8325
Eam1105I GACNNNNNGTC 1 cut(s) 6579
EarI CTCTTC 9 cut(s) 1365, 2287, 2433, 3762, 3889, 4323, 5490, 7522, 8325
Ecl136II GAGCTC 2 cut(s) 4571, 4664
Eco130I CCWWGG 7 cut(s) 723, 1096, 1313, 2103, 3246, 4083, 6143
Eco147I AGGCCT 1 cut(s) 3751
Eco24I GRGCYC 5 cut(s) 2468, 4573, 4666, 5436, 8212
Eco31I GGTCTC 1 cut(s) 1822
Eco32I GATATC 4 cut(s) 2496, 4455, 4925, 5241
Eco53kI GAGCTC 2 cut(s) 4571, 4664
Eco81I CCTNAGG 1 cut(s) 3837
Eco88I CYCGRG 2 cut(s) 4566, 5512
Eco91I GGTNACC 2 cut(s) 668, 1317
EcoICRI GAGCTC 2 cut(s) 4571, 4664
EcoO109I RGGNCCY 7 cut(s) 1689, 3315, 3833, 3971, 5588, 7460, 8209
EcoO65I GGTNACC 2 cut(s) 668, 1317
EcoRI GAATTC 5 cut(s) 165, 706, 2561, 4218, 7773
EcoRV GATATC 4 cut(s) 2496, 4455, 4925, 5241
EcoT14I CCWWGG 7 cut(s) 723, 1096, 1313, 2103, 3246, 4083, 6143
EcoT38I GRGCYC 5 cut(s) 2468, 4573, 4666, 5436, 8212
ErhI CCWWGG 7 cut(s) 723, 1096, 1313, 2103, 3246, 4083, 6143
Esp3I CGTCTC 4 cut(s) 2198, 4441, 4982, 7730
FaqI GGGAC 8 cut(s) 3260, 3328, 3653, 5087, 6087, 7594, 8131, 8441
FauI CCCGC 5 cut(s) 153, 3442, 6389, 8199, 8679
FauNDI CATATG 4 cut(s) 1675, 3110, 3427, 7003
FblI GTMKAC 2 cut(s) 1923, 7935
FriOI GRGCYC 5 cut(s) 2468, 4573, 4666, 5436, 8212
FspI TGCGCA 2 cut(s) 899, 3357
GsaI CCCAGC 2 cut(s) 6290, 6303
HaeII RGCGCY 2 cut(s) 3868, 8664
Hin1I GRCGYC 1 cut(s) 5974
HincII GTYRAC 3 cut(s) 1251, 7141, 7793
HindII GTYRAC 3 cut(s) 1251, 7141, 7793
HindIII AAGCTT 3 cut(s) 188, 3148, 6327
Hpy99I CGWCG 1 cut(s) 5976
HpyCH4IV ACGT 7 cut(s) 3295, 4180, 4975, 5701, 5974, 6263, 6825
HpySE526I ACGT 7 cut(s) 3295, 4180, 4975, 5701, 5974, 6263, 6825
Hsp92I GRCGYC 1 cut(s) 5974
Kpn2I TCCGGA 1 cut(s) 8617
LguI GCTCTTC 2 cut(s) 2287, 7522
MaeII ACGT 7 cut(s) 3295, 4180, 4975, 5701, 5974, 6263, 6825
MbiI CCGCTC 1 cut(s) 7988
MfeI CAATTG 1 cut(s) 7281
MlsI TGGCCA 1 cut(s) 2345
MluNI TGGCCA 1 cut(s) 2345
MlyI GAGTC 7 cut(s) 342, 1356, 2898, 7171, 7328, 7988, 8045
Mox20I TGGCCA 1 cut(s) 2345
MroI TCCGGA 1 cut(s) 8617
MroXI GAANNNNTTC 5 cut(s) 2561, 3594, 7048, 7354, 7398
MscI TGGCCA 1 cut(s) 2345
MslI CAYNNNNRTG 8 cut(s) 1356, 2473, 2625, 3351, 4029, 4542, 6863, 7584
Msp20I TGGCCA 1 cut(s) 2345
MspA1I CMGCKG 5 cut(s) 557, 3641, 6959, 7367, 8474
MspCI CTTAAG 1 cut(s) 4492
MunI CAATTG 1 cut(s) 7281
Mva1269I GAATGC 3 cut(s) 2620, 2630, 8166
MvnI CGCG 3 cut(s) 3531, 3533, 8118
NciI CCSGG 6 cut(s) 573, 749, 1833, 2039, 5513, 5514
NcoI CCATGG 1 cut(s) 723
NdeI CATATG 4 cut(s) 1675, 3110, 3427, 7003
NheI GCTAGC 3 cut(s) 2378, 4697, 5030
NmeAIII GCCGAG 1 cut(s) 949
NmuCI GTSAC 6 cut(s) 560, 668, 1317, 3540, 6533, 7980
NsbI TGCGCA 2 cut(s) 899, 3357
NspV TTCGAA 2 cut(s) 7870, 8158
PaeI GCATGC 4 cut(s) 4423, 5014, 8127, 8595
PaeR7I CTCGAG 1 cut(s) 4566
PagI TCATGA 3 cut(s) 2260, 6361, 6802
PceI AGGCCT 1 cut(s) 3751
PciI ACATGT 2 cut(s) 4727, 5882
PciSI GCTCTTC 2 cut(s) 2287, 7522
PcsI WCGNNNNNNNCGW 2 cut(s) 1041, 1426
PctI GAATGC 3 cut(s) 2620, 2630, 8166
PdmI GAANNNNTTC 5 cut(s) 2561, 3594, 7048, 7354, 7398
PflFI GACNNNGTC 1 cut(s) 1346
PflMI CCANNNNNTGG 3 cut(s) 209, 787, 3828
PfoI TCCNGGA 6 cut(s) 747, 2245, 2907, 3556, 4392, 5152
PleI GAGTC 7 cut(s) 342, 1355, 2898, 7170, 7327, 7987, 8045
PpsI GAGTC 7 cut(s) 342, 1355, 2898, 7170, 7327, 7987, 8045
Ppu21I YACGTR 1 cut(s) 5702
PpuMI RGGWCCY 4 cut(s) 1689, 3315, 3971, 7460
PscI ACATGT 2 cut(s) 4727, 5882
PshAI GACNNNNGTC 1 cut(s) 198
PshBI ATTAAT 1 cut(s) 5991
Psp124BI GAGCTC 2 cut(s) 4573, 4666
Psp1406I AACGTT 2 cut(s) 6263, 6825
Psp5II RGGWCCY 4 cut(s) 1689, 3315, 3971, 7460
PspEI GGTNACC 2 cut(s) 668, 1317
PspFI CCCAGC 2 cut(s) 6286, 6299
PspOMI GGGCCC 2 cut(s) 2464, 8208
PspPPI RGGWCCY 4 cut(s) 1689, 3315, 3971, 7460
PspXI VCTCGAGB 1 cut(s) 4566
PsrI GAACNNNNNNTAC 1 cut(s) 28
PstI CTGCAG 3 cut(s) 2026, 5866, 7828
PstNI CAGNNNCTG 5 cut(s) 2246, 2886, 6093, 8179, 8311
PsyI GACNNNGTC 1 cut(s) 1346
PvuII CAGCTG 4 cut(s) 557, 3641, 6959, 8474
RseI CAYNNNNRTG 8 cut(s) 1356, 2473, 2625, 3351, 4029, 4542, 6863, 7584
SacI GAGCTC 2 cut(s) 4573, 4666
SapI GCTCTTC 2 cut(s) 2287, 7522
ScaI AGTACT 1 cut(s) 412
SchI GAGTC 7 cut(s) 342, 1356, 2898, 7171, 7328, 7988, 8045
SfcI CTRYAG 6 cut(s) 1920, 2022, 5055, 5862, 7292, 7824
Sfr274I CTCGAG 1 cut(s) 4566
SfuI TTCGAA 2 cut(s) 7870, 8158
SlaI CTCGAG 1 cut(s) 4566
SmaI CCCGGG 1 cut(s) 5514
SmiMI CAYNNNNRTG 8 cut(s) 1356, 2473, 2625, 3351, 4029, 4542, 6863, 7584
SpeI ACTAGT 1 cut(s) 98
SphI GCATGC 4 cut(s) 4423, 5014, 8127, 8595
SseBI AGGCCT 1 cut(s) 3751
SspI AATATT 5 cut(s) 3170, 3876, 4483, 5124, 5473
SstI GAGCTC 2 cut(s) 4573, 4666
StuI AGGCCT 1 cut(s) 3751
StyI CCWWGG 7 cut(s) 723, 1096, 1313, 2103, 3246, 4083, 6143
TaiI ACGT 7 cut(s) 3298, 4183, 4978, 5704, 5977, 6266, 6828
TatI WGTACW 5 cut(s) 133, 410, 4850, 6719, 8638
TauI GCSGC 2 cut(s) 5425, 7370
TseFI GTSAC 6 cut(s) 560, 668, 1317, 3540, 6533, 7980
Tsp45I GTSAC 6 cut(s) 560, 668, 1317, 3540, 6533, 7980
TspGWI ACGGA 9 cut(s) 1413, 2270, 2562, 2818, 3958, 4465, 5478, 5664, 6121
TspMI CCCGGG 1 cut(s) 5512
Tth111I GACNNNGTC 1 cut(s) 1346
Van91I CCANNNNNTGG 3 cut(s) 209, 787, 3828
Vha464I CTTAAG 1 cut(s) 4492
VneI GTGCAC 3 cut(s) 3730, 4182, 6138
VspI ATTAAT 1 cut(s) 5991
XbaI TCTAGA 1 cut(s) 2900
XcmI CCANNNNNNNNNTGG 2 cut(s) 823, 4172
XhoI CTCGAG 1 cut(s) 4566
XmaI CCCGGG 1 cut(s) 5512
XmiI GTMKAC 2 cut(s) 1923, 7935
XmnI GAANNNNTTC 5 cut(s) 2561, 3594, 7048, 7354, 7398
ZraI GACGTC 1 cut(s) 5975
ZrmI AGTACT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.