pycom15g29640

Protein kinase C conserved region 2 (CalB)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0007148
Physical Location & Seq
Forward (+)
26554128 .. 26554619
492 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g29640.1

Sequence Viewer

Length: 492 bp
ATGATTGTTTTGGCCTCATTAGCTGCTATCGAGAAGGATTTATGGGCAACTGGAACTGTGAATGAGGAGTATCTGAAAGCTCTGAATGCTCTGTTTAGCAATTTCCCACGACTTAGAGCCACAGAACCTGCAACGTTAAGCATTCCTCATCTTGTTACATCCCTCAAGACAGGGTCTGAGGCAACTCAAGAAGCTGCCTTGGATGCACTCTTTCTTCTTAGGCAAGCTTGGTCAGCATGCCCAGCTGAAGTTTCTAGGGCTCAGTCAATTGCTGCAGCCGATGCAATCCCCTTGCTGCAATACTTAATTCAGTCTGGCCCACCTCGGTTTCAGGAGAAGACAGAATTTTTGTTACAATGTTTGCCTGGGACATTGGTGGTGATAATCAAGCGTGGAAATAATATGAAGCAGTCAGTGGGAAACCCTAGTGTTTATTGCAAGATTACACTGGGCAACACTCCACCTAAGCAAACTAAGGTAAAATGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0001101 GO:0002682 GO:0002683 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005794 GO:0005829 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005911 GO:0005938 GO:0005975 GO:0005976 GO:0006073 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008017 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009414 GO:0009415 GO:0009506 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009832 GO:0009833 GO:0009856 GO:0009898 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010208 GO:0010215 GO:0010330 GO:0010927 GO:0010941 GO:0012505 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0022414 GO:0022603 GO:0022607 GO:0030054 GO:0030198 GO:0030243 GO:0030244 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032886 GO:0032989 GO:0032991 GO:0033036 GO:0033043 GO:0033365 GO:0033612 GO:0033692 GO:0034613 GO:0034637 GO:0034645 GO:0036211 GO:0036449 GO:0040007 GO:0042221 GO:0042546 GO:0042742 GO:0042981 GO:0043062 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043622 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044380 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0044706 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048609 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048868 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051211 GO:0051239 GO:0051273 GO:0051274 GO:0051301 GO:0051493 GO:0051592 GO:0051641 GO:0051704 GO:0051707 GO:0055028 GO:0055044 GO:0060548 GO:0061458 GO:0061640 GO:0065007 GO:0070507 GO:0070647 GO:0070696 GO:0070726 GO:0070727 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0072697 GO:0072698 GO:0072699 GO:0085029 GO:0090567 GO:0097435 GO:0098542 GO:0098552 GO:0098562 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1902494 GO:1903047 GO:1905421 GO:1990234 GO:1990752 GO:1990778 GO:2000026 GO:2000028 GO:2000067 GO:2000241 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm C2

Protein Analysis

164

Amino Acids

17.8

Weight (kDa)

9.07

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
AclI AACGTT 1 cut(s) 134
AcsI RAATTY 1 cut(s) 344
AcuI CTGAAG 1 cut(s) 267
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 5 cut(s) 23, 80, 194, 227, 245
AluI AGCT 5 cut(s) 23, 80, 194, 227, 245
AlwNI CAGNNNCTG 2 cut(s) 128, 176
AoxI GGCC 2 cut(s) 12, 316
ApeKI GCWGC 5 cut(s) 23, 194, 272, 275, 295
ApoI RAATTY 1 cut(s) 344
ArsI GACNNNNNNTTYG 2 cut(s) 331, 363
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 391
BanII GRGCYC 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 344
BbvI GCAGC 5 cut(s) 10, 181, 259, 282, 287
BciT130I CCWGG 1 cut(s) 366
BfaI CTAG 2 cut(s) 255, 426
BfmI CTRYAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 136
BisI GCNGC 5 cut(s) 24, 195, 273, 276, 296
BlsI GCNGC 5 cut(s) 25, 196, 274, 277, 297
Bme1390I CCNGG 1 cut(s) 366
BmgT120I GGNCC 1 cut(s) 317
BmrFI CCNGG 1 cut(s) 366
BmrI ACTGGG 1 cut(s) 458
BmsI GCATC 2 cut(s) 193, 271
BmuI ACTGGG 1 cut(s) 458
BpiI GAAGAC 1 cut(s) 344
Bpu10I CCTNAGC 1 cut(s) 465
BpuEI CTTGAG 2 cut(s) 149, 171
BsaJI CCNNGG 3 cut(s) 198, 323, 365
Bse1I ACTGG 2 cut(s) 55, 453
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 3 cut(s) 198, 323, 365
BseGI GGATG 2 cut(s) 158, 208
BseMII CTCAG 2 cut(s) 168, 275
BseNI ACTGG 2 cut(s) 55, 453
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 5 cut(s) 10, 181, 259, 282, 287
BseYI CCCAGC 1 cut(s) 241
BshFI GGCC 2 cut(s) 14, 318
BslFI GGGAC 1 cut(s) 382
BsmFI GGGAC 1 cut(s) 382
BsmI GAATGC 2 cut(s) 91, 141
BsnI GGCC 2 cut(s) 14, 318
Bsp1286I GDGCHC 1 cut(s) 262
BspANI GGCC 2 cut(s) 14, 318
BspCNI CTCAG 2 cut(s) 169, 274
BspMAI CTGCAG 1 cut(s) 277
BspMI ACCTGC 1 cut(s) 136
BsrI ACTGG 2 cut(s) 55, 453
BssECI CCNNGG 3 cut(s) 198, 323, 365
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 58
BstAPI GCANNNNNTGC 1 cut(s) 281
BstC8I GCNNGC 2 cut(s) 225, 238
BstDEI CTNAG 6 cut(s) 113, 177, 218, 261, 465, 474
BstF5I GGATG 2 cut(s) 158, 208
BstMWI GCNNNNNNNGC 6 cut(s) 20, 86, 203, 233, 242, 281
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 5 cut(s) 10, 181, 259, 282, 287
BstV2I GAAGAC 1 cut(s) 344
BsuRI GGCC 2 cut(s) 14, 318
BtsCI GGATG 2 cut(s) 158, 208
BtsIMutI CAGTG 2 cut(s) 420, 446
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 225, 238
CaiI CAGNNNCTG 2 cut(s) 128, 176
Cfr13I GGNCC 1 cut(s) 317
CviAII CATG 1 cut(s) 237
DdeI CTNAG 6 cut(s) 113, 177, 218, 261, 465, 474
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 1 cut(s) 240
FaiI YATR 3 cut(s) 43, 238, 404
FaqI GGGAC 1 cut(s) 382
FatI CATG 1 cut(s) 236
Fnu4HI GCNGC 5 cut(s) 24, 195, 273, 276, 296
FokI GGATG 2 cut(s) 145, 215
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 5 cut(s) 24, 195, 273, 276, 296
FspBI CTAG 2 cut(s) 255, 426
GluI GCNGC 5 cut(s) 24, 195, 273, 276, 296
GsaI CCCAGC 1 cut(s) 245
HaeIII GGCC 2 cut(s) 14, 318
Hin1II CATG 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 225
HphI GGTGA 1 cut(s) 391
Hpy188I TCNGA 3 cut(s) 75, 84, 178
Hpy188III TCNNGA 4 cut(s) 31, 166, 188, 332
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 6 cut(s) 131, 206, 275, 284, 298, 438
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 86, 203, 233, 242, 281
HpyF3I CTNAG 6 cut(s) 113, 177, 218, 261, 465, 474
HpySE526I ACGT 1 cut(s) 134
Hsp92II CATG 1 cut(s) 240
LpnPI CCDG 9 cut(s) 36, 141, 156, 255, 300, 317, 351, 378, 434
Lsp1109I GCAGC 5 cut(s) 10, 181, 259, 282, 287
LweI GCATC 2 cut(s) 193, 271
MaeI CTAG 2 cut(s) 255, 426
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 2 cut(s) 154, 351
MboII GAAGA 2 cut(s) 206, 349
MfeI CAATTG 1 cut(s) 267
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 4 cut(s) 100, 267, 306, 344
MnlI CCTC 6 cut(s) 25, 58, 156, 172, 173, 333
MseI TTAA 3 cut(s) 137, 305, 490
MspA1I CMGCKG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 366
MunI CAATTG 1 cut(s) 267
Mva1269I GAATGC 2 cut(s) 91, 141
MvaI CCWGG 1 cut(s) 366
MwoI GCNNNNNNNGC 6 cut(s) 20, 86, 203, 233, 242, 281
NlaIII CATG 1 cut(s) 240
NspI RCATGY 1 cut(s) 240
PaeI GCATGC 1 cut(s) 240
PctI GAATGC 2 cut(s) 91, 141
PflFI GACNNNGTC 1 cut(s) 172
PkrI GCNGC 5 cut(s) 25, 196, 274, 277, 297
Psp1406I AACGTT 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 364
PspFI CCCAGC 1 cut(s) 241
PspGI CCWGG 1 cut(s) 364
PspPI GGNCC 1 cut(s) 317
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 2 cut(s) 128, 176
PsyI GACNNNGTC 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 245
SaqAI TTAA 3 cut(s) 137, 305, 490
SatI GCNGC 5 cut(s) 24, 195, 273, 276, 296
Sau96I GGNCC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 1 cut(s) 262
SfaNI GCATC 2 cut(s) 193, 271
SfcI CTRYAG 1 cut(s) 273
SmlI CTYRAG 2 cut(s) 164, 186
SmoI CTYRAG 2 cut(s) 164, 186
SphI GCATGC 1 cut(s) 240
Sse9I AATT 4 cut(s) 100, 267, 306, 344
SspMI CTAG 2 cut(s) 255, 426
StyD4I CCNGG 1 cut(s) 364
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 137
TaqI TCGA 1 cut(s) 30
TasI AATT 4 cut(s) 100, 267, 306, 344
Tru1I TTAA 3 cut(s) 137, 305, 490
Tru9I TTAA 3 cut(s) 137, 305, 490
TscAI CASTG 2 cut(s) 420, 453
TseI GCWGC 5 cut(s) 23, 194, 272, 275, 295
TspDTI ATGAA 1 cut(s) 419
TspRI CASTG 2 cut(s) 420, 453
Tth111I GACNNNGTC 1 cut(s) 172
XapI RAATTY 1 cut(s) 344
XceI RCATGY 1 cut(s) 240
XspI CTAG 2 cut(s) 255, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.