Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007148

Physical Location & Seq

Genomic Coordinates Reverse (-)

18371283 .. 18371864

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0197400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAAATCAAATTGCTCAAGGCCAATGGGCCTCAATTCATCCATAGAAAATATAATTAAGCTTCAAGGTAGCAAGGTATGGAGAGCAAAGAATTTACCTTTACAAGATAAGTCAGGCAAAACAGGCACCAAGTCGGAAGAACAAAGGATTGCTACTTCCCTTCCCCACGAGGAAGCACCAAATAGCACCAAGTCGGAGGAACCATCTTCCTTCAAGAAAGGACCAAATAGCACCAAGGTAGAGGAACCATCTTCCTACAAGGTTTACGGAAATTGGTATATCTACACACCCTATGAAGCCCGTGCACCTCTTGGCACCAAGGCGGTAGAACCAAATAATGCCACTTCTCCCCATGAGGTTGCTGTGCCTGCTTTAGATCGTCTTGATCTCAATGAGAAGTCCAATGGTGCCATTGAGGACTCATCTGGTTTTGCTTGGGTTTGTAAATTACTTGATGGTGATGGTAATACCCCTCCCACTTCCGATAATGATTGCTGCTGTTTTAAGTGGACTGAAGTCCTAGCTCCAAATTTTAGTTTTCCTAGTCGGAAGCACCGTTTAGATGCTCCTAGATATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0001101 GO:0002682 GO:0002683 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005794 GO:0005829 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005911 GO:0005938 GO:0005975 GO:0005976 GO:0006073 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008017 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009414 GO:0009415 GO:0009506 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009832 GO:0009833 GO:0009856 GO:0009898 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010208 GO:0010215 GO:0010330 GO:0010927 GO:0010941 GO:0012505 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0022414 GO:0022603 GO:0022607 GO:0030054 GO:0030198 GO:0030243 GO:0030244 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032886 GO:0032989 GO:0032991 GO:0033036 GO:0033043 GO:0033365 GO:0033612 GO:0033692 GO:0034613 GO:0034637 GO:0034645 GO:0036211 GO:0036449 GO:0040007 GO:0042221 GO:0042546 GO:0042742 GO:0042981 GO:0043062 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043622 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044380 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0044706 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048609 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048868 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051211 GO:0051239 GO:0051273 GO:0051274 GO:0051301 GO:0051493 GO:0051592 GO:0051641 GO:0051704 GO:0051707 GO:0055028 GO:0055044 GO:0060548 GO:0061458 GO:0061640 GO:0065007 GO:0070507 GO:0070647 GO:0070696 GO:0070726 GO:0070727 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0072697 GO:0072698 GO:0072699 GO:0085029 GO:0090567 GO:0097435 GO:0098542 GO:0098552 GO:0098562 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1902494 GO:1903047 GO:1905421 GO:1990234 GO:1990752 GO:1990778 GO:2000026 GO:2000028 GO:2000067 GO:2000241 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm C2

Protein Analysis

193

Amino Acids

21.33

Weight (kDa)

7.57

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22125
fragaria_vesca	FvH4_1g21660 FvH4_1g21660 FvH4_1g21660 FvH4_1g21660
malus_domestica	MD01G1024000.v1.1 MD15G1329300.v1.1
prunus_persica	Prupe.6G179000_v2.0.a1 Prupe.6G179000_v2.0.a1 Prupe.6G179000_v2.0.a1
pyrus_communis	pycom01g05170 pycom15g29620 pycom15g29630 pycom15g29640 pycom15g29650
rosa_chinensis	RchiOBHm_Chr2g0115531
rosa_laevigata	RLG00000018191
rosa_roxburghii	Rroxscaffold_2G00129000
rosa_rugosa	Rorug02G0197400 Rorug02G0197500 Rorug02G0197600
rosa_samantha	Rh2AG255000 Rh2CG260200 Rh2DG263100
rosa_wichuraiana	Rw2G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	125, 314, 407
AciI	CCGC	1 cut(s)	323
AcsI	RAATTY	2 cut(s)	91, 529
AcuI	CTGAAG	1 cut(s)	534
AgsI	TTSAA	2 cut(s)	65, 214
AluBI	AGCT	2 cut(s)	61, 524
AluI	AGCT	2 cut(s)	61, 524
Alw21I	GWGCWC	1 cut(s)	307
Alw44I	GTGCAC	1 cut(s)	303
AoxI	GGCC	2 cut(s)	20, 28
ApaLI	GTGCAC	1 cut(s)	303
ApeKI	GCWGC	1 cut(s)	495
ApoI	RAATTY	2 cut(s)	91, 529
AspS9I	GGNCC	2 cut(s)	28, 221
AsuHPI	GGTGA	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	307
BanI	GGYRCC	3 cut(s)	125, 314, 407
BauI	CACGAG	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	4 cut(s)	211, 256, 449, 455
BfaI	CTAG	3 cut(s)	521, 543, 570
BisI	GCNGC	1 cut(s)	496
BlsI	GCNGC	1 cut(s)	497
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	28, 221
BmiI	GGNNCC	5 cut(s)	127, 201, 246, 316, 409
BmsI	GCATC	1 cut(s)	553
BoxI	GACNNNNGTC	1 cut(s)	515
BsaJI	CCNNGG	2 cut(s)	234, 318
BseDI	CCNNGG	2 cut(s)	234, 318
BseGI	GGATG	1 cut(s)	38
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	482
BshFI	GGCC	2 cut(s)	22, 30
BshNI	GGYRCC	3 cut(s)	125, 314, 407
BsiHKAI	GWGCWC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	22, 30
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	2 cut(s)	376, 385
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	2 cut(s)	22, 30
BspLI	GGNNCC	5 cut(s)	127, 201, 246, 316, 409
BspT107I	GGYRCC	3 cut(s)	125, 314, 407
BssECI	CCNNGG	2 cut(s)	234, 318
BssMI	GATC	2 cut(s)	376, 385
BssSI	CACGAG	1 cut(s)	167
BssT1I	CCWWGG	2 cut(s)	234, 318
Bst2BI	CACGAG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	557
BstC8I	GCNNGC	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	38
BstKTI	GATC	2 cut(s)	379, 388
BstMBI	GATC	2 cut(s)	376, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 368
BstPAI	GACNNNNGTC	1 cut(s)	515
BstSLI	GKGCMC	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	482
BsuRI	GGCC	2 cut(s)	22, 30
BtsCI	GGATG	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	369
Cfr13I	GGNCC	2 cut(s)	28, 221
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	5 cut(s)	22, 30, 61, 299, 524
CviKI_1	RGCY	5 cut(s)	22, 30, 61, 299, 524
DpnI	GATC	2 cut(s)	378, 387
DpnII	GATC	2 cut(s)	376, 385
Eco130I	CCWWGG	2 cut(s)	234, 318
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	534
EcoT14I	CCWWGG	2 cut(s)	234, 318
ErhI	CCWWGG	2 cut(s)	234, 318
FaeI	CATG	1 cut(s)	356
FaiI	YATR	6 cut(s)	44, 53, 79, 279, 294, 354
FatI	CATG	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	496
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	496
FspBI	CTAG	3 cut(s)	521, 543, 570
GluI	GCNGC	1 cut(s)	496
HaeIII	GGCC	2 cut(s)	22, 30
Hin1II	CATG	1 cut(s)	356
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	1 cut(s)	419
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	3 cut(s)	265, 305, 510
Hpy188I	TCNGA	4 cut(s)	136, 196, 484, 549
Hpy188III	TCNNGA	2 cut(s)	214, 383
Hpy8I	GTNNAC	3 cut(s)	265, 305, 510
HpyAV	CCTTC	2 cut(s)	170, 220
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4V	TGCA	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 368
Hsp92II	CATG	1 cut(s)	356
Kzo9I	GATC	2 cut(s)	376, 385
LmnI	GCTCC	2 cut(s)	529, 571
LpnPI	CCDG	4 cut(s)	99, 108, 381, 411
Lsp1109I	GCAGC	1 cut(s)	482
LweI	GCATC	1 cut(s)	553
MaeI	CTAG	3 cut(s)	521, 543, 570
MalI	GATC	2 cut(s)	378, 387
MboI	GATC	2 cut(s)	376, 385
MboII	GAAGA	3 cut(s)	149, 198, 243
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	7 cut(s)	10, 34, 54, 91, 271, 446, 529
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	3 cut(s)	114, 174, 527
MnlI	CCTC	8 cut(s)	41, 163, 190, 235, 318, 349, 409, 483
MseI	TTAA	2 cut(s)	57, 504
MwoI	GCNNNNNNNGC	2 cut(s)	123, 368
NdeII	GATC	2 cut(s)	376, 385
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	5 cut(s)	127, 201, 246, 316, 409
PcsI	WCGNNNNNNNCGW	1 cut(s)	553
PkrI	GCNGC	1 cut(s)	497
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PshAI	GACNNNNGTC	1 cut(s)	515
PspN4I	GGNNCC	5 cut(s)	127, 201, 246, 316, 409
PspPI	GGNCC	2 cut(s)	28, 221
SaqAI	TTAA	2 cut(s)	57, 504
SatI	GCNGC	1 cut(s)	496
Sau3AI	GATC	2 cut(s)	376, 385
Sau96I	GGNCC	2 cut(s)	28, 221
SchI	GAGTC	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	9 cut(s)	63, 70, 78, 100, 240, 264, 310, 360, 526
SfaNI	GCATC	1 cut(s)	553
SinI	GGWCC	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	7 cut(s)	10, 34, 54, 91, 271, 446, 529
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	3 cut(s)	521, 543, 570
StyI	CCWWGG	2 cut(s)	234, 318
TaaI	ACNGT	1 cut(s)	557
TasI	AATT	7 cut(s)	10, 34, 54, 91, 271, 446, 529
Tru1I	TTAA	2 cut(s)	57, 504
Tru9I	TTAA	2 cut(s)	57, 504
TseI	GCWGC	1 cut(s)	495
TspDTI	ATGAA	3 cut(s)	17, 27, 309
TspGWI	ACGGA	1 cut(s)	282
VneI	GTGCAC	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	2 cut(s)	91, 529
XspI	CTAG	3 cut(s)	521, 543, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.