Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007607

Physical Location & Seq

Genomic Coordinates Reverse (-)

30993983 .. 30997356

Gene Structure 3374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAAGAGCCGAAGCTCCAAGAAGATCTCCGCAACATGGATTCCCATCTTCTGCATCCCTGCTTTCCTTCTGGGGATGCTTATCACCGGCAGAATGTGGGCAGCACCTGAATCCAACGGTCAGCTAATTTCGATTCGTCGCCAAGAGCAAGAGCTTCAAATCGTCTCCGAAGATTGGGCAACTAAGAAGAAGCATGGACATGATAAGAATGTGATGGACGAAATCTACAAAACCCATGAATCAATTCAATCTCTAGACAAGCAGATGGCGTCGATTCAGATGGAATTGGCGGCAGCTCGGAGTTCACAGGAGATGGGGGACTCCGGTGGCTCCACCTCCAACTCGCAGTTGTCCAAGGACAATTCGACGAGAAAGAAAGCGTTTATTGTTATTGGAATTAATACTGCTTTTAGTAGTAGAAGGAGGCGAGATTCAGTTAGAGAGACTTGGATGCCTCAAGGGGAAAAGCTACTGCAGTTGGAGCGCGAGAAGGGGATAGTTATCCGTTTTATGATTGGCCACAGTGCAACATCCAACAGCATTTTAGATAGAGCCATTGATTCAGAAGATGCTCAACATAATGATTTCCTCAGGCTGGAACACGTTGAAGGTTATCATGAATTGTCTGCCAAAACGAAAATTTTCTTCACCACAGCAGTTGCACAATGGGATGCTGATTTTTATGTCAAGGTGGATGATGATGTACATGTCAATTTAGGTATGCTAGCTACAACTCTTGCCCGTCACCGTTCAAAACCTAGAGTCTACATTGGGTGTATGAAATCTGGACCTGTTCTTGCCCAAAAGAATGTGAAGTACCATGAACCAGAGTATTGGAAGTTTGGAGAGGAGGGAAACAAATACTTCCGGCATGCAACTGGACAGATTTATGCAATCTCAAGGGATCTTGCTACATATGTCTCCATTAACCAGCCCATATTGCATAAGTATGCCAATGAAGACGTGTCGCTTGGTTCGTGGTTTATTGGTCTTGAAGTCGAACACATTGATGAACGCAATATGTGCTGTCGTACTCCACCAGATTGTGAGTGGAAGGCACAGGCAGGTAATATGTGTATTGCATCATTTGATTGGAGCTGCAGTGGTATCTGCAAGTCGGTGGAAAGGATTAAATCTGTTCATGAGAAGTGTGGTGAAGGTGATGCAGCTGTTTGGAGTTCGTTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008378 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

397

Amino Acids

44.91

Weight (kDa)

7.63

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	10 - 102	1e-29	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	141 - 337	1.4e-48	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22015 AT1G77810 AT1G77810
fragaria_vesca	FvH4_5g38810
malus_domestica	MD00G1104200.v1.1 MD15G1358800.v1.1
prunus_persica	Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1 Prupe.1G506600_v2.0.a1
pyrus_communis	pycom08g14830 pycom15g32130
rosa_chinensis	RchiOBHm_Chr7g0240811
rosa_laevigata	RLG00000000623
rosa_multiflora	Rmu_sc0004821.1_g000013 Rmu_sc0010888.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219610
rosa_rugosa	Rorug07G0339000 Rorug07G0339100 Rorug07G0339200 Rorug07G0339300
rosa_samantha	Rh7AG493400 Rh7BG465400
rosa_wichuraiana	Rw7G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1055
AccI	GTMKAC	1 cut(s)	765
AccII	CGCG	1 cut(s)	486
AciI	CCGC	2 cut(s)	30, 290
AclWI	GGATC	1 cut(s)	912
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	1 cut(s)	639
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	3 cut(s)	705, 818, 1033
AfiI	CCNNNNNNNGG	3 cut(s)	36, 174, 595
AflIII	ACRYGT	3 cut(s)	601, 706, 963
AgsI	TTSAA	5 cut(s)	158, 248, 608, 753, 995
AjiI	CACGTC	1 cut(s)	964
AluBI	AGCT	8 cut(s)	15, 124, 154, 296, 469, 728, 1098, 1169
AluI	AGCT	8 cut(s)	15, 124, 154, 296, 469, 728, 1098, 1169
Alw26I	GTCTC	3 cut(s)	169, 437, 925
AlwI	GGATC	1 cut(s)	912
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	517
ApeKI	GCWGC	4 cut(s)	101, 293, 1098, 1166
ApoI	RAATTY	1 cut(s)	639
AseI	ATTAAT	1 cut(s)	399
Asp700I	GAANNNNTTC	2 cut(s)	243, 641
AspLEI	GCGC	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	788
AsuHPI	GGTGA	5 cut(s)	76, 640, 737, 1166, 1172
AsuNHI	GCTAGC	1 cut(s)	724
AvaII	GGWCC	1 cut(s)	788
AxyI	CCTNAGG	1 cut(s)	590
BalI	TGGCCA	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	966
BbvI	GCAGC	4 cut(s)	113, 305, 1085, 1178
BccI	CCATC	5 cut(s)	53, 208, 259, 274, 307
BcoDI	GTCTC	3 cut(s)	169, 437, 925
BfaI	CTAG	3 cut(s)	254, 725, 759
BfmI	CTRYAG	2 cut(s)	473, 1099
BfuAI	ACCTGC	1 cut(s)	1055
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	5 cut(s)	102, 291, 294, 1099, 1167
BlsI	GCNGC	5 cut(s)	103, 292, 295, 1100, 1168
Bme18I	GGWCC	1 cut(s)	788
BmgBI	CACGTC	1 cut(s)	964
BmgT120I	GGNCC	1 cut(s)	788
BmiI	GGNNCC	1 cut(s)	331
BmsI	GCATC	7 cut(s)	63, 66, 441, 559, 661, 1091, 1153
BmtI	GCTAGC	1 cut(s)	728
BpiI	GAAGAC	1 cut(s)	966
BpuEI	CTTGAG	2 cut(s)	441, 883
BsaBI	GATNNNNATC	3 cut(s)	44, 80, 500
BsaHI	GRCGYC	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	354
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	1087, 1117
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 174, 595
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	883
Bse21I	CCTNAGG	1 cut(s)	590
Bse8I	GATNNNNATC	3 cut(s)	44, 80, 500
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	6 cut(s)	54, 81, 456, 530, 676, 700
BseJI	GATNNNNATC	3 cut(s)	44, 80, 500
BseLI	CCNNNNNNNGG	3 cut(s)	36, 174, 595
BseMII	CTCAG	1 cut(s)	604
BseNI	ACTGG	1 cut(s)	883
BseRI	GAGGAG	1 cut(s)	863
BseXI	GCAGC	4 cut(s)	113, 305, 1085, 1178
Bsh1236I	CGCG	1 cut(s)	486
BshFI	GGCC	1 cut(s)	519
BsiSI	CCGG	3 cut(s)	87, 324, 868
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	3 cut(s)	36, 174, 595
BsmAI	GTCTC	3 cut(s)	169, 437, 925
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	519
Bsp1407I	TGTACA	1 cut(s)	703
Bsp143I	GATC	2 cut(s)	24, 904
BspACI	CCGC	2 cut(s)	30, 290
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	1 cut(s)	603
BspFNI	CGCG	1 cut(s)	486
BspHI	TCATGA	2 cut(s)	616, 1141
BspLI	GGNNCC	1 cut(s)	331
BspMAI	CTGCAG	2 cut(s)	477, 1103
BspMI	ACCTGC	1 cut(s)	1055
BspOI	GCTAGC	1 cut(s)	728
BspPI	GGATC	1 cut(s)	912
BsrFI	RCCGGY	1 cut(s)	86
BsrGI	TGTACA	1 cut(s)	703
BsrI	ACTGG	1 cut(s)	883
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	2 cut(s)	24, 904
BssNI	GRCGYC	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	354
Bst4CI	ACNGT	3 cut(s)	119, 524, 749
BstACI	GRCGYC	1 cut(s)	269
BstAPI	GCANNNNNTGC	1 cut(s)	1023
BstAUI	TGTACA	1 cut(s)	703
BstC8I	GCNNGC	2 cut(s)	726, 873
BstDEI	CTNAG	2 cut(s)	183, 590
BstF5I	GGATG	6 cut(s)	54, 81, 456, 530, 676, 700
BstFNI	CGCG	1 cut(s)	486
BstHHI	GCGC	1 cut(s)	486
BstKTI	GATC	2 cut(s)	27, 907
BstMAI	GTCTC	3 cut(s)	169, 437, 925
BstMBI	GATC	2 cut(s)	24, 904
BstMWI	GCNNNNNNNGC	3 cut(s)	481, 940, 1023
BstNSI	RCATGY	2 cut(s)	710, 875
BstSFI	CTRYAG	2 cut(s)	473, 1099
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	4 cut(s)	113, 305, 1085, 1178
BstV2I	GAAGAC	1 cut(s)	966
BstX2I	RGATCY	2 cut(s)	24, 904
BstXI	CCANNNNNNTGG	1 cut(s)	834
BstYI	RGATCY	2 cut(s)	24, 904
Bsu36I	CCTNAGG	1 cut(s)	590
BsuRI	GGCC	1 cut(s)	519
BtrI	CACGTC	1 cut(s)	964
BtsCI	GGATG	6 cut(s)	54, 81, 456, 530, 676, 700
BtsI	GCAGTG	1 cut(s)	1108
BtsIMutI	CAGTG	2 cut(s)	529, 1108
BveI	ACCTGC	1 cut(s)	1055
Cac8I	GCNNGC	2 cut(s)	726, 873
CaiI	CAGNNNCTG	1 cut(s)	107
CciI	TCATGA	2 cut(s)	616, 1141
CfoI	GCGC	1 cut(s)	486
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	788
CseI	GACGC	1 cut(s)	258
Csp6I	GTAC	3 cut(s)	704, 817, 1032
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	9 cut(s)	36, 194, 200, 236, 617, 707, 821, 872, 1142
CviQI	GTAC	3 cut(s)	704, 817, 1032
DdeI	CTNAG	2 cut(s)	183, 590
DpnI	GATC	2 cut(s)	26, 906
DpnII	GATC	2 cut(s)	24, 904
EaeI	YGGCCR	1 cut(s)	517
Eco130I	CCWWGG	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	788
Eco81I	CCTNAGG	1 cut(s)	590
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	9 cut(s)	39, 197, 203, 239, 620, 710, 824, 875, 1145
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	9 cut(s)	35, 193, 199, 235, 616, 706, 820, 871, 1141
FauNDI	CATATG	1 cut(s)	916
FblI	GTMKAC	1 cut(s)	765
Fnu4HI	GCNGC	5 cut(s)	102, 291, 294, 1099, 1167
FokI	GGATG	6 cut(s)	41, 88, 463, 517, 683, 707
Fsp4HI	GCNGC	5 cut(s)	102, 291, 294, 1099, 1167
FspBI	CTAG	3 cut(s)	254, 725, 759
GlaI	GCGC	1 cut(s)	485
GluI	GCNGC	5 cut(s)	102, 291, 294, 1099, 1167
HaeIII	GGCC	1 cut(s)	519
HapII	CCGG	3 cut(s)	87, 324, 868
HgaI	GACGC	1 cut(s)	258
HhaI	GCGC	1 cut(s)	486
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	9 cut(s)	39, 197, 203, 239, 620, 710, 824, 875, 1145
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HinfI	GANTC	9 cut(s)	40, 110, 133, 239, 274, 320, 431, 560, 762
HpaII	CCGG	3 cut(s)	87, 324, 868
HphI	GGTGA	5 cut(s)	76, 640, 737, 1166, 1172
Hpy166II	GTNNAC	2 cut(s)	305, 766
Hpy188I	TCNGA	4 cut(s)	169, 279, 300, 565
Hpy188III	TCNNGA	5 cut(s)	254, 617, 786, 992, 1142
Hpy8I	GTNNAC	2 cut(s)	305, 766
Hpy99I	CGWCG	3 cut(s)	141, 274, 370
HpyAV	CCTTC	6 cut(s)	77, 414, 484, 602, 1048, 1151
HpyCH4III	ACNGT	3 cut(s)	119, 524, 749
HpyCH4IV	ACGT	2 cut(s)	603, 963
HpyF10VI	GCNNNNNNNGC	3 cut(s)	481, 940, 1023
HpyF3I	CTNAG	2 cut(s)	183, 590
HpySE526I	ACGT	2 cut(s)	603, 963
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	9 cut(s)	39, 197, 203, 239, 620, 710, 824, 875, 1145
HspAI	GCGC	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	24, 904
LmnI	GCTCC	4 cut(s)	20, 335, 481, 1095
Lsp1109I	GCAGC	4 cut(s)	113, 305, 1085, 1178
LweI	GCATC	7 cut(s)	63, 66, 441, 559, 661, 1091, 1153
MaeI	CTAG	3 cut(s)	254, 725, 759
MaeII	ACGT	2 cut(s)	603, 963
MaeIII	GTNAC	1 cut(s)	743
MalI	GATC	2 cut(s)	26, 906
MboI	GATC	2 cut(s)	24, 904
MboII	GAAGA	8 cut(s)	16, 34, 40, 182, 199, 578, 637, 971
MflI	RGATCY	2 cut(s)	24, 904
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	8 cut(s)	126, 243, 284, 361, 396, 620, 639, 712
MluNI	TGGCCA	1 cut(s)	519
MlyI	GAGTC	2 cut(s)	314, 771
MmeI	TCCRAC	4 cut(s)	138, 363, 459, 558
MnlI	CCTC	6 cut(s)	346, 417, 465, 599, 841, 844
Mox20I	TGGCCA	1 cut(s)	519
MroXI	GAANNNNTTC	2 cut(s)	243, 641
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	3 cut(s)	399, 927, 1131
MslI	CAYNNNNRTG	3 cut(s)	198, 948, 1008
Msp20I	TGGCCA	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	1169
MspI	CCGG	3 cut(s)	87, 324, 868
MvnI	CGCG	1 cut(s)	486
MwoI	GCNNNNNNNGC	3 cut(s)	481, 940, 1023
NdeI	CATATG	1 cut(s)	916
NdeII	GATC	2 cut(s)	24, 904
NheI	GCTAGC	1 cut(s)	724
NlaIII	CATG	9 cut(s)	39, 197, 203, 239, 620, 710, 824, 875, 1145
NlaIV	GGNNCC	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	743
NspI	RCATGY	2 cut(s)	710, 875
PaeI	GCATGC	1 cut(s)	875
PagI	TCATGA	2 cut(s)	616, 1141
PciI	ACATGT	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	1 cut(s)	974
PdmI	GAANNNNTTC	2 cut(s)	243, 641
PfeI	GAWTC	7 cut(s)	40, 110, 133, 239, 274, 431, 560
PkrI	GCNGC	5 cut(s)	103, 292, 295, 1100, 1168
PleI	GAGTC	2 cut(s)	314, 770
PpsI	GAGTC	2 cut(s)	314, 770
PscI	ACATGT	1 cut(s)	706
PshBI	ATTAAT	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	788
PstI	CTGCAG	2 cut(s)	477, 1103
PstNI	CAGNNNCTG	1 cut(s)	107
PsuI	RGATCY	2 cut(s)	24, 904
PvuII	CAGCTG	1 cut(s)	1169
RsaI	GTAC	3 cut(s)	705, 818, 1033
RsaNI	GTAC	3 cut(s)	704, 817, 1032
RseI	CAYNNNNRTG	3 cut(s)	198, 948, 1008
SaqAI	TTAA	3 cut(s)	399, 927, 1131
SatI	GCNGC	5 cut(s)	102, 291, 294, 1099, 1167
Sau3AI	GATC	2 cut(s)	24, 904
Sau96I	GGNCC	1 cut(s)	788
SchI	GAGTC	2 cut(s)	314, 771
SfaNI	GCATC	7 cut(s)	63, 66, 441, 559, 661, 1091, 1153
SfcI	CTRYAG	2 cut(s)	473, 1099
SinI	GGWCC	1 cut(s)	788
SmiMI	CAYNNNNRTG	3 cut(s)	198, 948, 1008
SmlI	CTYRAG	2 cut(s)	456, 898
SmoI	CTYRAG	2 cut(s)	456, 898
SphI	GCATGC	1 cut(s)	875
Sse9I	AATT	8 cut(s)	126, 243, 284, 361, 396, 620, 639, 712
SsiI	CCGC	2 cut(s)	30, 290
SspMI	CTAG	3 cut(s)	254, 725, 759
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	3 cut(s)	119, 524, 749
TaiI	ACGT	2 cut(s)	606, 966
TaqI	TCGA	4 cut(s)	131, 272, 365, 999
TasI	AATT	8 cut(s)	126, 243, 284, 361, 396, 620, 639, 712
TatI	WGTACW	1 cut(s)	703
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	7 cut(s)	40, 110, 133, 239, 274, 431, 560
Tru1I	TTAA	3 cut(s)	399, 927, 1131
Tru9I	TTAA	3 cut(s)	399, 927, 1131
TscAI	CASTG	2 cut(s)	529, 1108
TseFI	GTSAC	1 cut(s)	743
TseI	GCWGC	4 cut(s)	101, 293, 1098, 1166
Tsp45I	GTSAC	1 cut(s)	743
TspDTI	ATGAA	8 cut(s)	17, 252, 633, 794, 837, 972, 1026, 1130
TspGWI	ACGGA	1 cut(s)	494
TspRI	CASTG	2 cut(s)	529, 1108
VpaK11BI	GGWCC	1 cut(s)	788
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	1 cut(s)	639
XbaI	TCTAGA	1 cut(s)	253
XceI	RCATGY	2 cut(s)	710, 875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1047
XmiI	GTMKAC	1 cut(s)	765
XmnI	GAANNNNTTC	2 cut(s)	243, 641
XspI	CTAG	3 cut(s)	254, 725, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.