Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008318

Physical Location & Seq

Genomic Coordinates Forward (+)

34312536 .. 34315056

Gene Structure 2521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g34510.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAAGCTTCACAAAGACTACTATGGCTACTACTACCCCAACCAGTCTCAGAGAGCCGCTTTAGCCGGCCTTTTGGTGGTCCTCTTTCCGGCCTTCCTGCCAAACCTCTTTGGCCCATTGGGCCACGCCTCTCCTTCCATCTTCTCGGAGTGGAATGCCCCGCAACCCCGGCATTCGCGCCTTCTAAGTCCGGCTTTACTTCTTCAATCTTCTGCGGATCAACAGAGCAAGCTTTGGGCTCCGTTGCCCGACCAAAGATGGAAGCATTGTCCTGAAGAGCCTAGAAGTTTATCATCGTTGCCGAAAGAATCTACTGGGTATATTCAGGTGTTCCTTGATGGAGGCTTGAACCAGCAGAAAATGGGGATTTGTGATGCAGTTGCTGTTGCTAAAATTTTGAATGCCACTTTGGTTATTCCACACCTTGAAGTTAATCCTGTGTGGCAAGATTCGAGTTCCTTTGAGGAAATTTTTGATGTGGATCACTTTATTGAAGCCCTACAGGGTGAAGTTTCTATAGTTAAAGTCGTTCCTATTGAATTTTCTTGGAGCACTAGGGAGTATTATGCTACTGGGATACGGATAACTAGAATAAAAACAGCACCTGTTCATGCTTCTTCTGATTGGTATCTGGAAAACGTCCTGCCCATATTGCAGAGATATGGAGTTGCTGCTATCTCCCCATTTTCTCATCGTTTGGCTTTTGAAAACTTGCCTCAAAACATACAGCGCCTACGTTGTAAAGTCAACTTTGAAGCTTTAGCCTTTGTTCCTCATATCCGGGAATTGGGAGAAACCCTTGTTAATCGTCTCCGCTATCCCAATAGAAACCAAAAGGCAGGTACTGGCTCGCAGGACAAAGCAAATGAAATCGAGAAACAGGGAGCTGGGAAGTATGTTGTTTTGCATCTTCGCTTTGATAAAGTATGGCTGCCCATTCAGCCTGTGATTTTGGTGGTGGTAAAGCTGAGAAACTCGCCCTTGCAAAATATCGGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

334

Amino Acids

37.67

Weight (kDa)

9.11

Isoelectric Point (pI)

63.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24530
fragaria_vesca	FvH4_5g35380 FvH4_5g35380 FvH4_5g35380 FvH4_5g35380
malus_domestica	MD08G1197500.v1.1 MD15G1385100.v1.1
prunus_persica	Prupe.1G531800_v2.0.a1 Prupe.1G531800_v2.0.a1
pyrus_communis	pycom08g16980 pycom15g34510
rosa_chinensis	RchiOBHm_Chr7g0236731
rosa_laevigata	RLG00000001065
rosa_multiflora	Rmu_sc0003720.1_g000015 Rmu_sc0011298.1_g000002
rosa_roxburghii	Rroxscaffold_3G00224910
rosa_rugosa	Rorug07G0298700
rosa_samantha	Rh7AG454100 Rh7BG424800 Rh7CG472400 Rh7DG441400
rosa_wichuraiana	Rw7G037650 Rw7G037680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	830
AccII	CGCG	1 cut(s)	178
AciI	CCGC	4 cut(s)	57, 161, 215, 814
AclWI	GGATC	2 cut(s)	225, 489
AcsI	RAATTY	3 cut(s)	393, 468, 539
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	1 cut(s)	844
AfiI	CCNNNNNNNGG	3 cut(s)	76, 88, 787
AgsI	TTSAA	8 cut(s)	206, 349, 400, 428, 494, 539, 707, 755
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AluBI	AGCT	5 cut(s)	7, 232, 758, 887, 967
AluI	AGCT	5 cut(s)	7, 232, 758, 887, 967
Alw21I	GWGCWC	1 cut(s)	554
Alw26I	GTCTC	2 cut(s)	51, 815
AlwI	GGATC	2 cut(s)	225, 489
AlwNI	CAGNNNCTG	3 cut(s)	383, 605, 845
AoxI	GGCC	4 cut(s)	67, 90, 112, 121
ApeKI	GCWGC	2 cut(s)	671, 931
ApoI	RAATTY	3 cut(s)	393, 468, 539
AspLEI	GCGC	2 cut(s)	180, 732
AspS9I	GGNCC	3 cut(s)	79, 113, 121
AsuC2I	CCSGG	2 cut(s)	169, 782
AsuHPI	GGTGA	1 cut(s)	518
AvaII	GGWCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	554
BbvI	GCAGC	2 cut(s)	658, 918
BccI	CCATC	3 cut(s)	146, 252, 332
BciVI	GTATCC	1 cut(s)	570
BcnI	CCSGG	2 cut(s)	169, 782
BcoDI	GTCTC	2 cut(s)	51, 815
BfaI	CTAG	3 cut(s)	282, 555, 588
BfmI	CTRYAG	2 cut(s)	500, 516
BfoI	RGCGCY	1 cut(s)	733
BfuAI	ACCTGC	1 cut(s)	830
BfuI	GTATCC	1 cut(s)	570
BglI	GCCNNNNNGGC	1 cut(s)	120
BisI	GCNGC	3 cut(s)	57, 672, 932
BlsI	GCNGC	3 cut(s)	58, 673, 933
Bme1390I	CCNGG	2 cut(s)	169, 782
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	3 cut(s)	79, 113, 121
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	169, 782
BmrI	ACTGGG	2 cut(s)	324, 582
BmsI	GCATC	2 cut(s)	364, 916
BmuI	ACTGGG	2 cut(s)	324, 582
BpuMI	CCSGG	2 cut(s)	169, 782
BsaBI	GATNNNNATC	2 cut(s)	480, 627
BsaJI	CCNNGG	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 88, 787
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	4 cut(s)	43, 319, 577, 850
Bse8I	GATNNNNATC	2 cut(s)	480, 627
BseDI	CCNNGG	1 cut(s)	167
BseJI	GATNNNNATC	2 cut(s)	480, 627
BseLI	CCNNNNNNNGG	3 cut(s)	76, 88, 787
BseMII	CTCAG	2 cut(s)	62, 959
BseNI	ACTGG	4 cut(s)	43, 319, 577, 850
BseXI	GCAGC	2 cut(s)	658, 918
BseYI	CCCAGC	1 cut(s)	887
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	4 cut(s)	69, 92, 114, 123
BsiHKAI	GWGCWC	1 cut(s)	554
BsiSI	CCGG	5 cut(s)	66, 89, 169, 191, 781
BslI	CCNNNNNNNGG	3 cut(s)	76, 88, 787
BsmAI	GTCTC	2 cut(s)	51, 815
BsmBI	CGTCTC	1 cut(s)	815
BsmI	GAATGC	3 cut(s)	160, 172, 406
BsnI	GGCC	4 cut(s)	69, 92, 114, 123
Bsp1286I	GDGCHC	2 cut(s)	241, 554
Bsp143I	GATC	2 cut(s)	217, 481
BspACI	CCGC	4 cut(s)	57, 161, 215, 814
BspANI	GGCC	4 cut(s)	69, 92, 114, 123
BspCNI	CTCAG	2 cut(s)	61, 960
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	240
BspMI	ACCTGC	1 cut(s)	830
BspPI	GGATC	2 cut(s)	225, 489
BspQI	GCTCTTC	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	4 cut(s)	43, 319, 577, 850
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	2 cut(s)	217, 481
Bst6I	CTCTTC	1 cut(s)	270
BstC8I	GCNNGC	3 cut(s)	67, 230, 851
BstDEI	CTNAG	3 cut(s)	48, 185, 968
BstFNI	CGCG	1 cut(s)	178
BstH2I	RGCGCY	1 cut(s)	733
BstHHI	GCGC	2 cut(s)	180, 732
BstKTI	GATC	2 cut(s)	220, 484
BstMAI	GTCTC	2 cut(s)	51, 815
BstMBI	GATC	2 cut(s)	217, 481
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 120, 169, 652, 940
BstSCI	CCNGG	2 cut(s)	167, 780
BstSFI	CTRYAG	2 cut(s)	500, 516
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	658, 918
BsuI	GTATCC	1 cut(s)	570
BsuRI	GGCC	4 cut(s)	69, 92, 114, 123
BveI	ACCTGC	1 cut(s)	830
Cac8I	GCNNGC	3 cut(s)	67, 230, 851
CaiI	CAGNNNCTG	3 cut(s)	383, 605, 845
CfoI	GCGC	2 cut(s)	180, 732
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	3 cut(s)	79, 113, 121
Csp6I	GTAC	1 cut(s)	843
CviAII	CATG	1 cut(s)	611
CviQI	GTAC	1 cut(s)	843
DdeI	CTNAG	3 cut(s)	48, 185, 968
DpnI	GATC	2 cut(s)	219, 483
DpnII	GATC	2 cut(s)	217, 481
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	815
FaeI	CATG	1 cut(s)	614
FalI	AAGNNNNNCTT	2 cut(s)	178, 210
FatI	CATG	1 cut(s)	610
FauI	CCCGC	1 cut(s)	168
Fnu4HI	GCNGC	3 cut(s)	57, 672, 932
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	3 cut(s)	57, 672, 932
FspBI	CTAG	3 cut(s)	282, 555, 588
GlaI	GCGC	2 cut(s)	179, 731
GluI	GCNGC	3 cut(s)	57, 672, 932
GsaI	CCCAGC	1 cut(s)	891
HaeII	RGCGCY	1 cut(s)	733
HaeIII	GGCC	4 cut(s)	69, 92, 114, 123
HapII	CCGG	5 cut(s)	66, 89, 169, 191, 781
HhaI	GCGC	2 cut(s)	180, 732
Hin1II	CATG	1 cut(s)	614
Hin6I	GCGC	2 cut(s)	178, 730
HinP1I	GCGC	2 cut(s)	178, 730
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HindIII	AAGCTT	3 cut(s)	5, 230, 756
HinfI	GANTC	2 cut(s)	308, 449
HpaII	CCGG	5 cut(s)	66, 89, 169, 191, 781
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	1 cut(s)	748
Hpy188I	TCNGA	3 cut(s)	51, 148, 622
Hpy188III	TCNNGA	3 cut(s)	272, 632, 874
Hpy8I	GTNNAC	1 cut(s)	748
HpyAV	CCTTC	3 cut(s)	103, 144, 191
HpyCH4IV	ACGT	2 cut(s)	639, 736
HpyCH4V	TGCA	4 cut(s)	377, 655, 907, 985
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 120, 169, 652, 940
HpyF3I	CTNAG	3 cut(s)	48, 185, 968
HpySE526I	ACGT	2 cut(s)	639, 736
Hsp92II	CATG	1 cut(s)	614
HspAI	GCGC	2 cut(s)	178, 730
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	217, 481
LguI	GCTCTTC	1 cut(s)	270
LmnI	GCTCC	3 cut(s)	244, 549, 884
Lsp1109I	GCAGC	2 cut(s)	658, 918
LweI	GCATC	2 cut(s)	364, 916
MaeI	CTAG	3 cut(s)	282, 555, 588
MaeII	ACGT	2 cut(s)	639, 736
MalI	GATC	2 cut(s)	219, 483
MboI	GATC	2 cut(s)	217, 481
MboII	GAAGA	6 cut(s)	133, 194, 201, 287, 609, 902
MhlI	GDGCHC	2 cut(s)	241, 554
MluCI	AATT	4 cut(s)	393, 468, 539, 785
MnlI	CCTC	7 cut(s)	92, 116, 139, 335, 457, 726, 783
MroNI	GCCGGC	1 cut(s)	65
MseI	TTAA	3 cut(s)	432, 522, 804
MspI	CCGG	5 cut(s)	66, 89, 169, 191, 781
MspR9I	CCNGG	2 cut(s)	169, 782
Mva1269I	GAATGC	3 cut(s)	160, 172, 406
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	5 cut(s)	62, 120, 169, 652, 940
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	2 cut(s)	169, 782
NdeII	GATC	2 cut(s)	217, 481
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	1 cut(s)	614
NlaIV	GGNNCC	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	270
PctI	GAATGC	3 cut(s)	160, 172, 406
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	308, 449
PfoI	TCCNGGA	1 cut(s)	780
PkrI	GCNGC	3 cut(s)	58, 673, 933
PspFI	CCCAGC	1 cut(s)	887
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	3 cut(s)	79, 113, 121
PstNI	CAGNNNCTG	3 cut(s)	383, 605, 845
RsaI	GTAC	1 cut(s)	844
RsaNI	GTAC	1 cut(s)	843
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	3 cut(s)	432, 522, 804
SatI	GCNGC	3 cut(s)	57, 672, 932
Sau3AI	GATC	2 cut(s)	217, 481
Sau96I	GGNCC	3 cut(s)	79, 113, 121
ScrFI	CCNGG	2 cut(s)	169, 782
SduI	GDGCHC	2 cut(s)	241, 554
SfaNI	GCATC	2 cut(s)	364, 916
SfcI	CTRYAG	2 cut(s)	500, 516
SfiI	GGCCNNNNNGGCC	1 cut(s)	120
SinI	GGWCC	1 cut(s)	79
Sse9I	AATT	4 cut(s)	393, 468, 539, 785
SsiI	CCGC	4 cut(s)	57, 161, 215, 814
SspMI	CTAG	3 cut(s)	282, 555, 588
StyD4I	CCNGG	2 cut(s)	167, 780
TaiI	ACGT	2 cut(s)	642, 739
TaqI	TCGA	2 cut(s)	452, 873
TasI	AATT	4 cut(s)	393, 468, 539, 785
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	2 cut(s)	308, 449
Tru1I	TTAA	3 cut(s)	432, 522, 804
Tru9I	TTAA	3 cut(s)	432, 522, 804
TseI	GCWGC	2 cut(s)	671, 931
TspDTI	ATGAA	3 cut(s)	17, 599, 882
TspGWI	ACGGA	2 cut(s)	231, 595
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	3 cut(s)	393, 468, 539
XspI	CTAG	3 cut(s)	282, 555, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.