Rh7BG424800

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008318
Physical Location & Seq
Reverse (-)
48464481 .. 48468233
3753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG424800.1

Sequence Viewer

Length: 1542 bp
ATGAAGCTCTACAAAGACTACTACTTCCACCCCAACCACTCTCAGAGAGCCGCCTTGGCTGCCCTCTTCGTCCTTCTCTTCCCCACCTTCTTCCCCAATCTCTTCGGCCCATTGGGCCGCGCCTCTCCTTCCATCTTCTCTGAATGGAATGCTCCAAAGCCCAGACATTTACATCTTCTGGAGGCAGCCTTATCAACCCAATCTATCAAGGTTTGGGCTCCGCTGCCCAATCAGGGATGGAAGCATTGCCCTGAAGAGCCTAAAAGTGCTTCATCGAAACCGAAAGGATCAAATGGGTATATACAGGTGTTCCTTGATGGAGGCTTGAATCAGCAGAAAATGGGGATTTGTGATGCGGTGGCTGTTGCTAAAATCTTGAATGCAACTCTGGTTCTACCGCACCTTGAAGTTAATCCCGTGTGGCAAGATTCGAGTTCCTTTGAGGAAATTTTTGATGTCAATCACTTTTTAGAAGTCCTACGCAATGAAGTTTCTATAGTTAAAGAACTTCCTAGTGAGTTTTCTTGGAGCTCTAGGGAGTATTATGCTACAGGCATACGGCCTACTAGAATTAAAACGGCACCTGTTCATGCTCCTGCTGACTGGTATCTGGAAAATGTCTTGCCCATAATGCAGAGTTATGGAGTTGCTGCTATTTCCCCGTTCTCCCATCGTTTGACTTTCGACAATTTGCCTGAAAGCATTCAGCGCCTACGTTGTAAAGTGAACTTTCAAGCTTTAGCCTTTGTTCCTCATATAAGGGAATTGGGAGAAACCCTTGTTAATCGTCTCCGCAACCCTCCTATAAGAATCCAAAACTCAGAAACTGAATCACAAGAGGGAACAAATGACCTTGATAAACAGGGAGCTGGGAAGTTTGTTGTTTTGCATCTTCGCTTTGACAAAGATATGGCTGCTCATTCCGCCTGTGATTTTGGTGGTGGTAAAGCTGAGAAACTTGCTCTTGCAAAATATCGACAAGTAATTTGGCAGGGAAGGGTCCTAAAATCTCAGTTCACAGATGAGGAGCTGAGAGTTCAGGGGCGTTGCCCGTTGACGCCTGAAGAGATTGGATTGTTGCTAGCAGCTCTGGGCTTCAACAATAGCACCCGGCTTTATCTTGCTTCCCACAAGGTTTATGGCGGAGAAGCAAGGATCTCAACTCTGTGCAGATTATTTCCGCTACTCGAGGATAAGAAGAGCCTTACCTCCGCCGAGGAAAGGGCCAAGGTTGAAGGCAAGGCTTCTCTGTTAGCTGCAGTTGACTATTATGTCAGCATGCAAAGTGACATCTTCATTTCTGCTTCTCCGGGAAATATGCACAATGCACTGGTGTGTCATCGAGCTTATATGAACTTGAAGACTATTAGACCAAGCATGACCCTGTTGAGTAAGCTATTCTTGAATAAGAGCATGCAGTGGTCAGAGTTCCAACATGCAGTTTTGGAAGGGCATAAAAACAGACAAGGGCAGATCAAGTTGAGAAAGGAGAAGCAATCAATATATACATATCCTGCTCCTGATTGCATGTGTCAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

513

Amino Acids

57.81

Weight (kDa)

9.01

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 100 - 451 5.1e-88 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1271
AccB1I GGYRCC 1 cut(s) 580
AccII CGCG 1 cut(s) 120
AclWI GGATC 2 cut(s) 295, 1163
AcsI RAATTY 1 cut(s) 447
AcuI CTGAAG 2 cut(s) 273, 1083
AcyI GRCGYC 1 cut(s) 1058
AfiI CCNNNNNNNGG 2 cut(s) 233, 1221
AgsI TTSAA 8 cut(s) 328, 379, 407, 734, 1099, 1235, 1360, 1405
AleI CACNNNNGTG 1 cut(s) 1333
Alw21I GWGCWC 1 cut(s) 533
Alw26I GTCTC 1 cut(s) 794
AlwI GGATC 2 cut(s) 295, 1163
AlwNI CAGNNNCTG 1 cut(s) 827
Ama87I CYCGRG 1 cut(s) 1187
AoxI GGCC 4 cut(s) 106, 115, 560, 1224
ApeKI GCWGC 7 cut(s) 59, 185, 223, 650, 914, 1085, 1256
ApoI RAATTY 1 cut(s) 447
ArsI GACNNNNNNTTYG 2 cut(s) 969, 1001
Asp700I GAANNNNTTC 1 cut(s) 702
AspLEI GCGC 2 cut(s) 122, 711
AspS9I GGNCC 4 cut(s) 107, 115, 1000, 1224
AsuC2I CCSGG 2 cut(s) 1111, 1311
AsuNHI GCTAGC 1 cut(s) 1081
AvaI CYCGRG 1 cut(s) 1187
AvaII GGWCC 1 cut(s) 1000
BanI GGYRCC 1 cut(s) 580
BanII GRGCYC 2 cut(s) 220, 533
BbsI GAAGAC 1 cut(s) 1367
Bbv12I GWGCWC 1 cut(s) 533
BbvI GCAGC 7 cut(s) 46, 197, 210, 637, 901, 1097, 1243
BccI CCATC 4 cut(s) 140, 231, 311, 678
BceAI ACGGC 2 cut(s) 575, 594
BcnI CCSGG 2 cut(s) 1111, 1311
BcoDI GTCTC 1 cut(s) 794
BfaI CTAG 4 cut(s) 513, 534, 567, 1082
BfmI CTRYAG 3 cut(s) 495, 549, 1257
BfoI RGCGCY 1 cut(s) 712
BglI GCCNNNNNGGC 2 cut(s) 56, 114
BisI GCNGC 9 cut(s) 51, 60, 118, 186, 224, 651, 915, 1086, 1257
BlsI GCNGC 9 cut(s) 52, 61, 119, 187, 225, 652, 916, 1087, 1258
Bme1390I CCNGG 2 cut(s) 1111, 1311
Bme18I GGWCC 1 cut(s) 1000
BmeT110I CYCGRG 1 cut(s) 1187
BmgT120I GGNCC 4 cut(s) 107, 115, 1000, 1224
BmiI GGNNCC 3 cut(s) 219, 582, 1001
BmrFI CCNGG 2 cut(s) 1111, 1311
BmsI GCATC 2 cut(s) 343, 898
BmtI GCTAGC 1 cut(s) 1085
BpiI GAAGAC 1 cut(s) 1367
BpmI CTGGAG 1 cut(s) 200
BpuMI CCSGG 2 cut(s) 1111, 1311
BsaBI GATNNNNATC 1 cut(s) 459
BsaHI GRCGYC 1 cut(s) 1058
BsaJI CCNNGG 3 cut(s) 54, 1215, 1227
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 1221
Bse1I ACTGG 2 cut(s) 608, 1335
Bse3DI GCAATG 2 cut(s) 244, 490
Bse8I GATNNNNATC 1 cut(s) 459
BseDI CCNNGG 3 cut(s) 54, 1215, 1227
BseGI GGATG 1 cut(s) 242
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 2 cut(s) 233, 1221
BseMI GCAATG 2 cut(s) 244, 490
BseMII CTCAG 5 cut(s) 56, 834, 942, 1022, 1025
BseNI ACTGG 2 cut(s) 608, 1335
BseRI GAGGAG 1 cut(s) 1040
BseXI GCAGC 7 cut(s) 46, 197, 210, 637, 901, 1097, 1243
BseYI CCCAGC 1 cut(s) 869
BsgI GTGCAG 1 cut(s) 1189
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 4 cut(s) 108, 117, 562, 1226
BshNI GGYRCC 1 cut(s) 580
BsiHKAI GWGCWC 1 cut(s) 533
BsiHKCI CYCGRG 1 cut(s) 1187
BsiSI CCGG 2 cut(s) 1111, 1310
BslI CCNNNNNNNGG 2 cut(s) 233, 1221
BsmAI GTCTC 1 cut(s) 794
BsmBI CGTCTC 1 cut(s) 794
BsmI GAATGC 3 cut(s) 154, 385, 702
BsnI GGCC 4 cut(s) 108, 117, 562, 1226
BsoBI CYCGRG 1 cut(s) 1187
Bsp1286I GDGCHC 2 cut(s) 220, 533
Bsp143I GATC 3 cut(s) 287, 1155, 1473
BspANI GGCC 4 cut(s) 108, 117, 562, 1226
BspCNI CTCAG 5 cut(s) 55, 833, 943, 1023, 1024
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 3 cut(s) 219, 582, 1001
BspMAI CTGCAG 1 cut(s) 1261
BspOI GCTAGC 1 cut(s) 1085
BspPI GGATC 2 cut(s) 295, 1163
BspQI GCTCTTC 2 cut(s) 249, 1193
BspT107I GGYRCC 1 cut(s) 580
BsrDI GCAATG 2 cut(s) 244, 490
BsrI ACTGG 2 cut(s) 608, 1335
BssECI CCNNGG 3 cut(s) 54, 1215, 1227
BssMI GATC 3 cut(s) 287, 1155, 1473
BssNI GRCGYC 1 cut(s) 1058
BssT1I CCWWGG 2 cut(s) 54, 1227
Bst6I CTCTTC 6 cut(s) 71, 83, 107, 249, 1059, 1193
BstACI GRCGYC 1 cut(s) 1058
BstC8I GCNNGC 3 cut(s) 1083, 1280, 1415
BstDEI CTNAG 5 cut(s) 42, 820, 951, 1011, 1031
BstF5I GGATG 1 cut(s) 242
BstFNI CGCG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 712
BstHHI GCGC 2 cut(s) 122, 711
BstKTI GATC 3 cut(s) 290, 1158, 1476
BstMAI GTCTC 1 cut(s) 794
BstMBI GATC 3 cut(s) 287, 1155, 1473
BstMWI GCNNNNNNNGC 6 cut(s) 56, 59, 114, 631, 708, 923
BstNSI RCATGY 4 cut(s) 1282, 1417, 1439, 1531
BstSCI CCNGG 2 cut(s) 1109, 1309
BstSFI CTRYAG 3 cut(s) 495, 549, 1257
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 7 cut(s) 46, 197, 210, 637, 901, 1097, 1243
BstV2I GAAGAC 1 cut(s) 1367
BstX2I RGATCY 1 cut(s) 1155
BstYI RGATCY 1 cut(s) 1155
BsuRI GGCC 4 cut(s) 108, 117, 562, 1226
BtsCI GGATG 1 cut(s) 242
BtsI GCAGTG 1 cut(s) 1424
BtsIMutI CAGTG 2 cut(s) 1328, 1424
Cac8I GCNNGC 3 cut(s) 1083, 1280, 1415
CaiI CAGNNNCTG 1 cut(s) 827
CfoI GCGC 2 cut(s) 122, 711
Cfr13I GGNCC 4 cut(s) 107, 115, 1000, 1224
CseI GACGC 1 cut(s) 1066
CviAII CATG 6 cut(s) 590, 1279, 1378, 1414, 1436, 1528
DdeI CTNAG 5 cut(s) 42, 820, 951, 1011, 1031
DpnI GATC 3 cut(s) 289, 1157, 1475
DpnII GATC 3 cut(s) 287, 1155, 1473
DrdI GACNNNNNNGTC 1 cut(s) 1271
DseDI GACNNNNNNGTC 1 cut(s) 1271
Eam1104I CTCTTC 6 cut(s) 71, 83, 107, 249, 1059, 1193
EarI CTCTTC 6 cut(s) 71, 83, 107, 249, 1059, 1193
EciI GGCGGA 3 cut(s) 913, 1158, 1201
Ecl136II GAGCTC 1 cut(s) 531
Eco130I CCWWGG 2 cut(s) 54, 1227
Eco24I GRGCYC 2 cut(s) 220, 533
Eco47I GGWCC 1 cut(s) 1000
Eco53kI GAGCTC 1 cut(s) 531
Eco57I CTGAAG 2 cut(s) 273, 1083
Eco88I CYCGRG 1 cut(s) 1187
EcoICRI GAGCTC 1 cut(s) 531
EcoO109I RGGNCCY 1 cut(s) 1000
EcoT14I CCWWGG 2 cut(s) 54, 1227
EcoT38I GRGCYC 2 cut(s) 220, 533
ErhI CCWWGG 2 cut(s) 54, 1227
Esp3I CGTCTC 1 cut(s) 794
FaeI CATG 6 cut(s) 593, 1282, 1381, 1417, 1439, 1531
FalI AAGNNNNNCTT 2 cut(s) 1385, 1417
FatI CATG 6 cut(s) 589, 1278, 1377, 1413, 1435, 1527
Fnu4HI GCNGC 9 cut(s) 51, 60, 118, 186, 224, 651, 915, 1086, 1257
FokI GGATG 1 cut(s) 249
FriOI GRGCYC 2 cut(s) 220, 533
Fsp4HI GCNGC 9 cut(s) 51, 60, 118, 186, 224, 651, 915, 1086, 1257
FspBI CTAG 4 cut(s) 513, 534, 567, 1082
GlaI GCGC 2 cut(s) 121, 710
GluI GCNGC 9 cut(s) 51, 60, 118, 186, 224, 651, 915, 1086, 1257
GsaI CCCAGC 1 cut(s) 873
GsuI CTGGAG 1 cut(s) 200
HaeII RGCGCY 1 cut(s) 712
HaeIII GGCC 4 cut(s) 108, 117, 562, 1226
HapII CCGG 2 cut(s) 1111, 1310
HgaI GACGC 1 cut(s) 1066
HhaI GCGC 2 cut(s) 122, 711
Hin1I GRCGYC 1 cut(s) 1058
Hin1II CATG 6 cut(s) 593, 1282, 1381, 1417, 1439, 1531
Hin6I GCGC 2 cut(s) 120, 709
HinP1I GCGC 2 cut(s) 120, 709
HincII GTYRAC 2 cut(s) 1056, 1264
HindII GTYRAC 2 cut(s) 1056, 1264
HindIII AAGCTT 2 cut(s) 735, 1536
HinfI GANTC 4 cut(s) 328, 428, 810, 830
HpaII CCGG 2 cut(s) 1111, 1310
Hpy166II GTNNAC 4 cut(s) 727, 1017, 1056, 1264
Hpy188I TCNGA 4 cut(s) 45, 142, 823, 1426
Hpy188III TCNNGA 5 cut(s) 179, 376, 611, 1402, 1520
Hpy8I GTNNAC 4 cut(s) 727, 1017, 1056, 1264
HpyAV CCTTC 6 cut(s) 83, 97, 138, 990, 1229, 1442
HpyCH4IV ACGT 1 cut(s) 715
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 59, 114, 631, 708, 923
HpyF3I CTNAG 5 cut(s) 42, 820, 951, 1011, 1031
HpySE526I ACGT 1 cut(s) 715
Hsp92I GRCGYC 1 cut(s) 1058
Hsp92II CATG 6 cut(s) 593, 1282, 1381, 1417, 1439, 1531
HspAI GCGC 2 cut(s) 120, 709
Kzo9I GATC 3 cut(s) 287, 1155, 1473
LguI GCTCTTC 2 cut(s) 249, 1193
LmnI GCTCC 7 cut(s) 157, 223, 528, 598, 866, 1027, 1522
Lsp1109I GCAGC 7 cut(s) 46, 197, 210, 637, 901, 1097, 1243
LweI GCATC 2 cut(s) 343, 898
MaeI CTAG 4 cut(s) 513, 534, 567, 1082
MaeII ACGT 1 cut(s) 715
MaeIII GTNAC 1 cut(s) 1286
MalI GATC 3 cut(s) 289, 1157, 1475
MboI GATC 3 cut(s) 287, 1155, 1473
MflI RGATCY 1 cut(s) 1155
MhlI GDGCHC 2 cut(s) 220, 533
MluCI AATT 5 cut(s) 447, 570, 688, 764, 984
MmeI TCCRAC 1 cut(s) 1456
MroXI GAANNNNTTC 1 cut(s) 702
MseI TTAA 5 cut(s) 411, 501, 573, 783, 1540
MslI CAYNNNNRTG 1 cut(s) 1333
MspA1I CMGCKG 1 cut(s) 223
MspI CCGG 2 cut(s) 1111, 1310
MspR9I CCNGG 2 cut(s) 1111, 1311
Mva1269I GAATGC 3 cut(s) 154, 385, 702
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 6 cut(s) 56, 59, 114, 631, 708, 923
NciI CCSGG 2 cut(s) 1111, 1311
NdeII GATC 3 cut(s) 287, 1155, 1473
NheI GCTAGC 1 cut(s) 1081
NlaIII CATG 6 cut(s) 593, 1282, 1381, 1417, 1439, 1531
NlaIV GGNNCC 3 cut(s) 219, 582, 1001
NmeAIII GCCGAG 1 cut(s) 1240
NmuCI GTSAC 1 cut(s) 1286
NspI RCATGY 4 cut(s) 1282, 1417, 1439, 1531
OliI CACNNNNGTG 1 cut(s) 1333
PaeI GCATGC 2 cut(s) 1282, 1417
PaeR7I CTCGAG 1 cut(s) 1187
PciSI GCTCTTC 2 cut(s) 249, 1193
PctI GAATGC 3 cut(s) 154, 385, 702
PdmI GAANNNNTTC 1 cut(s) 702
PfeI GAWTC 4 cut(s) 328, 428, 810, 830
PfoI TCCNGGA 1 cut(s) 1309
PkrI GCNGC 9 cut(s) 52, 61, 119, 187, 225, 652, 916, 1087, 1258
PpuMI RGGWCCY 1 cut(s) 1000
Psp124BI GAGCTC 1 cut(s) 533
Psp5II RGGWCCY 1 cut(s) 1000
PspFI CCCAGC 1 cut(s) 869
PspN4I GGNNCC 3 cut(s) 219, 582, 1001
PspPI GGNCC 4 cut(s) 107, 115, 1000, 1224
PspPPI RGGWCCY 1 cut(s) 1000
PspXI VCTCGAGB 1 cut(s) 1187
PstI CTGCAG 1 cut(s) 1261
PstNI CAGNNNCTG 1 cut(s) 827
PsuI RGATCY 1 cut(s) 1155
RseI CAYNNNNRTG 1 cut(s) 1333
SacI GAGCTC 1 cut(s) 533
SapI GCTCTTC 2 cut(s) 249, 1193
SaqAI TTAA 5 cut(s) 411, 501, 573, 783, 1540
SatI GCNGC 9 cut(s) 51, 60, 118, 186, 224, 651, 915, 1086, 1257
Sau3AI GATC 3 cut(s) 287, 1155, 1473
Sau96I GGNCC 4 cut(s) 107, 115, 1000, 1224
ScrFI CCNGG 2 cut(s) 1111, 1311
SduI GDGCHC 2 cut(s) 220, 533
SfaNI GCATC 2 cut(s) 343, 898
SfcI CTRYAG 3 cut(s) 495, 549, 1257
SfiI GGCCNNNNNGGCC 1 cut(s) 114
Sfr274I CTCGAG 1 cut(s) 1187
SinI GGWCC 1 cut(s) 1000
SlaI CTCGAG 1 cut(s) 1187
SmiMI CAYNNNNRTG 1 cut(s) 1333
SmlI CTYRAG 1 cut(s) 1187
SmoI CTYRAG 1 cut(s) 1187
SphI GCATGC 2 cut(s) 1282, 1417
Sse9I AATT 5 cut(s) 447, 570, 688, 764, 984
SspMI CTAG 4 cut(s) 513, 534, 567, 1082
SstI GAGCTC 1 cut(s) 533
StyD4I CCNGG 2 cut(s) 1109, 1309
StyI CCWWGG 2 cut(s) 54, 1227
TaiI ACGT 1 cut(s) 718
TaqI TCGA 6 cut(s) 275, 431, 684, 976, 1188, 1342
TasI AATT 5 cut(s) 447, 570, 688, 764, 984
TauI GCSGC 2 cut(s) 53, 120
TfiI GAWTC 4 cut(s) 328, 428, 810, 830
Tru1I TTAA 5 cut(s) 411, 501, 573, 783, 1540
Tru9I TTAA 5 cut(s) 411, 501, 573, 783, 1540
TscAI CASTG 2 cut(s) 1335, 1424
TseFI GTSAC 1 cut(s) 1286
TseI GCWGC 7 cut(s) 59, 185, 223, 650, 914, 1085, 1256
Tsp45I GTSAC 1 cut(s) 1286
TspDTI ATGAA 6 cut(s) 17, 261, 501, 578, 1285, 1367
TspRI CASTG 2 cut(s) 1335, 1424
VpaK11BI GGWCC 1 cut(s) 1000
XapI RAATTY 1 cut(s) 447
XceI RCATGY 4 cut(s) 1282, 1417, 1439, 1531
XcmI CCANNNNNNNNNTGG 1 cut(s) 1136
XhoI CTCGAG 1 cut(s) 1187
XmnI GAANNNNTTC 1 cut(s) 702
XspI CTAG 4 cut(s) 513, 534, 567, 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.