Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003720.1

Orthogroup ID

OG0008318

Physical Location & Seq

Genomic Coordinates Reverse (-)

89751 .. 93869

Gene Structure 4119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003720.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

atgaagctctacaaagactactacttccaccccaaccactctcagagagccgccttggctgccctcttcgtccttctcttccccaccttcttccccaatctcttcggcccattgggccgcgcctctccttccatcttctctgaatggaatgctccaaagcccagacatttacatcttctagaagcagccttgtcaacccaatcttatgttgagcatcagatcaaggtttgggctccgctgcccaatcagggatggaagcattgccctgaagagcctaaaagtgcttcatcgaaaccgaaaggatcaaatgggtatattcaggtgttccttgatggaggcttgaaccagcagaaaatggggatttgtgatgcggtggctgttgctaaaatcttgaatgcaactctggttctaccgcaccttgaagttaatcccgtgtggcaagattcgagttcctttgaggaaatttttgatgtcgatcactttttagaagtcctgcgcaatgaagtttctatagttaaagaacttcctagtgagttttcttggagctctagggagtattatgctacaggcatacggcctactagaattaaaacggcacctgttcatgctcctgctgagtggtatctggaaaatgtcttgcccataatgcagagttatggagttgctgctatttccccgttctcccatcgtttaactttcgacaatttgcccaaaagcattcagcgcctacgttgtaaagtgaactttcaagctttagcctttgttcctcatattagggaattgggagaaacccttgttaatcgtctccgcaaccctcctgtaagaatccaaaacgcagaaactgactcacaagagggaacaaatgaccttgataaacagggagctgggaagtttgttgttttgcatcttcgctttgacaaagatatggctgctcattccgcctgtgattttggtggtggtaaagctgagaaacttgctcttgcaaaatatcgacaagtaatttggcagggaagggtcctaaaatctcagttctcagatgaggagctgagagttcaggggcgttgcccgttgacgcctgaagagattggattgttgctagcagctctgggcttcaacaatagcacccggctttatcttgcttcccacaaggtttatggtggagaagcaaggatctcaactctgagaagattatttccactactggaggataagaagagccttacctccgccgagaaaagggctaaggttgaaggcaaggcttctctgttagctgcagttgactattatgtgagcatgcaaagtgacatcttcatttctgcttctccgggaaatatgcacaatgcactggtgtgtcatcgagcttatatgaacttgaagactattagaccgagcatgaccctgttgagtaagctgttcttgaataagagcatgcagtggtcagaattccaacatgcagttttggaagggcataaaaacagacaagggcagatcaagttgagaaaggagaagcaatccatatatacatatcctgctcctgattgcatgtgtcaagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

518

Amino Acids

58.48

Weight (kDa)

9.2

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24530
fragaria_vesca	FvH4_5g35380 FvH4_5g35380 FvH4_5g35380 FvH4_5g35380
malus_domestica	MD08G1197500.v1.1 MD15G1385100.v1.1
prunus_persica	Prupe.1G531800_v2.0.a1 Prupe.1G531800_v2.0.a1
pyrus_communis	pycom08g16980 pycom15g34510
rosa_chinensis	RchiOBHm_Chr7g0236731
rosa_laevigata	RLG00000001065
rosa_multiflora	Rmu_sc0003720.1_g000015 Rmu_sc0011298.1_g000002
rosa_roxburghii	Rroxscaffold_3G00224910
rosa_rugosa	Rorug07G0298700
rosa_samantha	Rh7AG454100 Rh7BG424800 Rh7CG472400 Rh7DG441400
rosa_wichuraiana	Rw7G037650 Rw7G037680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	497
AccB1I	GGYRCC	1 cut(s)	595
AccII	CGCG	1 cut(s)	120
AciI	CCGC	8 cut(s)	51, 118, 236, 371, 413, 808, 939, 1227
AclWI	GGATC	2 cut(s)	310, 1178
AcsI	RAATTY	2 cut(s)	462, 1442
AcuI	CTGAAG	2 cut(s)	288, 1098
AcyI	GRCGYC	1 cut(s)	1073
AfiI	CCNNNNNNNGG	2 cut(s)	248, 1236
AgsI	TTSAA	8 cut(s)	343, 394, 422, 749, 1114, 1250, 1375, 1420
AleI	CACNNNNGTG	1 cut(s)	1348
Alw21I	GWGCWC	1 cut(s)	548
Alw26I	GTCTC	1 cut(s)	809
AlwI	GGATC	2 cut(s)	310, 1178
AlwNI	CAGNNNCTG	1 cut(s)	842
AoxI	GGCC	3 cut(s)	106, 115, 575
ApeKI	GCWGC	7 cut(s)	59, 185, 238, 665, 929, 1100, 1271
ApoI	RAATTY	2 cut(s)	462, 1442
ArsI	GACNNNNNNTTYG	2 cut(s)	984, 1016
AspLEI	GCGC	3 cut(s)	122, 498, 726
AspS9I	GGNCC	3 cut(s)	107, 115, 1015
AsuC2I	CCSGG	2 cut(s)	1126, 1326
AsuNHI	GCTAGC	1 cut(s)	1096
AvaII	GGWCC	1 cut(s)	1015
BanI	GGYRCC	1 cut(s)	595
BanII	GRGCYC	2 cut(s)	235, 548
BbsI	GAAGAC	1 cut(s)	1382
Bbv12I	GWGCWC	1 cut(s)	548
BbvI	GCAGC	7 cut(s)	46, 197, 225, 652, 916, 1112, 1258
BccI	CCATC	4 cut(s)	140, 246, 326, 693
BceAI	ACGGC	2 cut(s)	590, 609
BcnI	CCSGG	2 cut(s)	1126, 1326
BcoDI	GTCTC	1 cut(s)	809
BfaI	CTAG	5 cut(s)	179, 528, 549, 582, 1097
BfmI	CTRYAG	3 cut(s)	510, 564, 1272
BfoI	RGCGCY	1 cut(s)	727
BglI	GCCNNNNNGGC	2 cut(s)	56, 114
BisI	GCNGC	9 cut(s)	51, 60, 118, 186, 239, 666, 930, 1101, 1272
BlsI	GCNGC	9 cut(s)	52, 61, 119, 187, 240, 667, 931, 1102, 1273
Bme1390I	CCNGG	2 cut(s)	1126, 1326
Bme18I	GGWCC	1 cut(s)	1015
BmgT120I	GGNCC	3 cut(s)	107, 115, 1015
BmiI	GGNNCC	3 cut(s)	234, 597, 1016
BmrFI	CCNGG	2 cut(s)	1126, 1326
BmsI	GCATC	3 cut(s)	223, 358, 913
BmtI	GCTAGC	1 cut(s)	1100
BpiI	GAAGAC	1 cut(s)	1382
BpmI	CTGGAG	1 cut(s)	1223
Bpu10I	CCTNAGC	1 cut(s)	1242
BpuMI	CCSGG	2 cut(s)	1126, 1326
BsaBI	GATNNNNATC	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	1073
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 1236
Bse1I	ACTGG	2 cut(s)	1206, 1350
Bse3DI	GCAATG	2 cut(s)	259, 505
Bse8I	GATNNNNATC	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	257
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	2 cut(s)	248, 1236
BseMI	GCAATG	2 cut(s)	259, 505
BseMII	CTCAG	7 cut(s)	56, 606, 957, 1037, 1040, 1047, 1172
BseNI	ACTGG	2 cut(s)	1206, 1350
BseRI	GAGGAG	1 cut(s)	1055
BseXI	GCAGC	7 cut(s)	46, 197, 225, 652, 916, 1112, 1258
BseYI	CCCAGC	1 cut(s)	884
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	3 cut(s)	108, 117, 577
BshNI	GGYRCC	1 cut(s)	595
BsiHKAI	GWGCWC	1 cut(s)	548
BsiSI	CCGG	2 cut(s)	1126, 1325
BslI	CCNNNNNNNGG	2 cut(s)	248, 1236
BsmAI	GTCTC	1 cut(s)	809
BsmBI	CGTCTC	1 cut(s)	809
BsmI	GAATGC	3 cut(s)	154, 400, 717
BsnI	GGCC	3 cut(s)	108, 117, 577
Bsp1286I	GDGCHC	2 cut(s)	235, 548
Bsp143I	GATC	5 cut(s)	219, 302, 475, 1170, 1488
BspACI	CCGC	8 cut(s)	51, 118, 236, 371, 413, 808, 939, 1227
BspANI	GGCC	3 cut(s)	108, 117, 577
BspCNI	CTCAG	7 cut(s)	55, 607, 958, 1038, 1039, 1046, 1173
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	234, 597, 1016
BspMAI	CTGCAG	1 cut(s)	1276
BspOI	GCTAGC	1 cut(s)	1100
BspPI	GGATC	2 cut(s)	310, 1178
BspQI	GCTCTTC	2 cut(s)	264, 1208
BspT107I	GGYRCC	1 cut(s)	595
BsrDI	GCAATG	2 cut(s)	259, 505
BsrI	ACTGG	2 cut(s)	1206, 1350
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	5 cut(s)	219, 302, 475, 1170, 1488
BssNI	GRCGYC	1 cut(s)	1073
BssT1I	CCWWGG	1 cut(s)	54
Bst6I	CTCTTC	6 cut(s)	71, 83, 107, 264, 1074, 1208
BstACI	GRCGYC	1 cut(s)	1073
BstC8I	GCNNGC	3 cut(s)	1098, 1295, 1430
BstDEI	CTNAG	8 cut(s)	42, 615, 966, 1026, 1033, 1046, 1181, 1242
BstF5I	GGATG	1 cut(s)	257
BstFNI	CGCG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	727
BstHHI	GCGC	3 cut(s)	122, 498, 726
BstKTI	GATC	5 cut(s)	222, 305, 478, 1173, 1491
BstMAI	GTCTC	1 cut(s)	809
BstMBI	GATC	5 cut(s)	219, 302, 475, 1170, 1488
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 59, 114, 646, 723, 938
BstNSI	RCATGY	4 cut(s)	1297, 1432, 1454, 1546
BstSCI	CCNGG	2 cut(s)	1124, 1324
BstSFI	CTRYAG	3 cut(s)	510, 564, 1272
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	7 cut(s)	46, 197, 225, 652, 916, 1112, 1258
BstV2I	GAAGAC	1 cut(s)	1382
BstX2I	RGATCY	1 cut(s)	1170
BstYI	RGATCY	1 cut(s)	1170
BsuRI	GGCC	3 cut(s)	108, 117, 577
BtsCI	GGATG	1 cut(s)	257
BtsI	GCAGTG	1 cut(s)	1439
BtsIMutI	CAGTG	2 cut(s)	1343, 1439
Cac8I	GCNNGC	3 cut(s)	1098, 1295, 1430
CaiI	CAGNNNCTG	1 cut(s)	842
CfoI	GCGC	3 cut(s)	122, 498, 726
Cfr13I	GGNCC	3 cut(s)	107, 115, 1015
CseI	GACGC	1 cut(s)	1081
CviAII	CATG	6 cut(s)	605, 1294, 1393, 1429, 1451, 1543
DdeI	CTNAG	8 cut(s)	42, 615, 966, 1026, 1033, 1046, 1181, 1242
DpnI	GATC	5 cut(s)	221, 304, 477, 1172, 1490
DpnII	GATC	5 cut(s)	219, 302, 475, 1170, 1488
Eam1104I	CTCTTC	6 cut(s)	71, 83, 107, 264, 1074, 1208
EarI	CTCTTC	6 cut(s)	71, 83, 107, 264, 1074, 1208
EciI	GGCGGA	2 cut(s)	928, 1216
Ecl136II	GAGCTC	1 cut(s)	546
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	2 cut(s)	235, 548
Eco47I	GGWCC	1 cut(s)	1015
Eco53kI	GAGCTC	1 cut(s)	546
Eco57I	CTGAAG	2 cut(s)	288, 1098
EcoICRI	GAGCTC	1 cut(s)	546
EcoO109I	RGGNCCY	1 cut(s)	1015
EcoRI	GAATTC	1 cut(s)	1442
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	2 cut(s)	235, 548
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	809
FaeI	CATG	6 cut(s)	608, 1297, 1396, 1432, 1454, 1546
FalI	AAGNNNNNCTT	2 cut(s)	1400, 1432
FatI	CATG	6 cut(s)	604, 1293, 1392, 1428, 1450, 1542
Fnu4HI	GCNGC	9 cut(s)	51, 60, 118, 186, 239, 666, 930, 1101, 1272
FokI	GGATG	1 cut(s)	264
FriOI	GRGCYC	2 cut(s)	235, 548
Fsp4HI	GCNGC	9 cut(s)	51, 60, 118, 186, 239, 666, 930, 1101, 1272
FspBI	CTAG	5 cut(s)	179, 528, 549, 582, 1097
FspI	TGCGCA	1 cut(s)	497
GlaI	GCGC	3 cut(s)	121, 497, 725
GluI	GCNGC	9 cut(s)	51, 60, 118, 186, 239, 666, 930, 1101, 1272
GsaI	CCCAGC	1 cut(s)	888
GsuI	CTGGAG	1 cut(s)	1223
HaeII	RGCGCY	1 cut(s)	727
HaeIII	GGCC	3 cut(s)	108, 117, 577
HapII	CCGG	2 cut(s)	1126, 1325
HgaI	GACGC	1 cut(s)	1081
HhaI	GCGC	3 cut(s)	122, 498, 726
Hin1I	GRCGYC	1 cut(s)	1073
Hin1II	CATG	6 cut(s)	608, 1297, 1396, 1432, 1454, 1546
Hin6I	GCGC	3 cut(s)	120, 496, 724
HinP1I	GCGC	3 cut(s)	120, 496, 724
HincII	GTYRAC	3 cut(s)	195, 1071, 1279
HindII	GTYRAC	3 cut(s)	195, 1071, 1279
HindIII	AAGCTT	2 cut(s)	750, 1551
HinfI	GANTC	3 cut(s)	443, 825, 845
HpaII	CCGG	2 cut(s)	1126, 1325
Hpy166II	GTNNAC	4 cut(s)	195, 742, 1071, 1279
Hpy188I	TCNGA	6 cut(s)	45, 142, 219, 1036, 1182, 1441
Hpy188III	TCNNGA	5 cut(s)	179, 391, 626, 1417, 1535
Hpy8I	GTNNAC	4 cut(s)	195, 742, 1071, 1279
HpyAV	CCTTC	6 cut(s)	83, 97, 138, 1005, 1244, 1457
HpyCH4IV	ACGT	1 cut(s)	730
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 59, 114, 646, 723, 938
HpyF3I	CTNAG	8 cut(s)	42, 615, 966, 1026, 1033, 1046, 1181, 1242
HpySE526I	ACGT	1 cut(s)	730
Hsp92I	GRCGYC	1 cut(s)	1073
Hsp92II	CATG	6 cut(s)	608, 1297, 1396, 1432, 1454, 1546
HspAI	GCGC	3 cut(s)	120, 496, 724
Kzo9I	GATC	5 cut(s)	219, 302, 475, 1170, 1488
LguI	GCTCTTC	2 cut(s)	264, 1208
LmnI	GCTCC	7 cut(s)	157, 238, 543, 613, 881, 1042, 1537
Lsp1109I	GCAGC	7 cut(s)	46, 197, 225, 652, 916, 1112, 1258
LweI	GCATC	3 cut(s)	223, 358, 913
MaeI	CTAG	5 cut(s)	179, 528, 549, 582, 1097
MaeII	ACGT	1 cut(s)	730
MaeIII	GTNAC	1 cut(s)	1301
MalI	GATC	5 cut(s)	221, 304, 477, 1172, 1490
MboI	GATC	5 cut(s)	219, 302, 475, 1170, 1488
MflI	RGATCY	1 cut(s)	1170
MhlI	GDGCHC	2 cut(s)	235, 548
MluCI	AATT	6 cut(s)	462, 585, 703, 779, 999, 1442
MlyI	GAGTC	1 cut(s)	839
MmeI	TCCRAC	1 cut(s)	1471
MseI	TTAA	6 cut(s)	426, 516, 588, 692, 798, 1555
MslI	CAYNNNNRTG	1 cut(s)	1348
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	2 cut(s)	1126, 1325
MspR9I	CCNGG	2 cut(s)	1126, 1326
Mva1269I	GAATGC	3 cut(s)	154, 400, 717
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	6 cut(s)	56, 59, 114, 646, 723, 938
NciI	CCSGG	2 cut(s)	1126, 1326
NdeII	GATC	5 cut(s)	219, 302, 475, 1170, 1488
NheI	GCTAGC	1 cut(s)	1096
NlaIII	CATG	6 cut(s)	608, 1297, 1396, 1432, 1454, 1546
NlaIV	GGNNCC	3 cut(s)	234, 597, 1016
NmeAIII	GCCGAG	1 cut(s)	1255
NmuCI	GTSAC	1 cut(s)	1301
NsbI	TGCGCA	1 cut(s)	497
NspI	RCATGY	4 cut(s)	1297, 1432, 1454, 1546
OliI	CACNNNNGTG	1 cut(s)	1348
PaeI	GCATGC	2 cut(s)	1297, 1432
PciSI	GCTCTTC	2 cut(s)	264, 1208
PctI	GAATGC	3 cut(s)	154, 400, 717
PfeI	GAWTC	2 cut(s)	443, 825
PfoI	TCCNGGA	1 cut(s)	1324
PkrI	GCNGC	9 cut(s)	52, 61, 119, 187, 240, 667, 931, 1102, 1273
PleI	GAGTC	1 cut(s)	839
PpsI	GAGTC	1 cut(s)	839
PpuMI	RGGWCCY	1 cut(s)	1015
Psp124BI	GAGCTC	1 cut(s)	548
Psp5II	RGGWCCY	1 cut(s)	1015
PspFI	CCCAGC	1 cut(s)	884
PspN4I	GGNNCC	3 cut(s)	234, 597, 1016
PspPI	GGNCC	3 cut(s)	107, 115, 1015
PspPPI	RGGWCCY	1 cut(s)	1015
PstI	CTGCAG	1 cut(s)	1276
PstNI	CAGNNNCTG	1 cut(s)	842
PsuI	RGATCY	1 cut(s)	1170
RseI	CAYNNNNRTG	1 cut(s)	1348
SacI	GAGCTC	1 cut(s)	548
SapI	GCTCTTC	2 cut(s)	264, 1208
SaqAI	TTAA	6 cut(s)	426, 516, 588, 692, 798, 1555
SatI	GCNGC	9 cut(s)	51, 60, 118, 186, 239, 666, 930, 1101, 1272
Sau3AI	GATC	5 cut(s)	219, 302, 475, 1170, 1488
Sau96I	GGNCC	3 cut(s)	107, 115, 1015
SchI	GAGTC	1 cut(s)	839
ScrFI	CCNGG	2 cut(s)	1126, 1326
SduI	GDGCHC	2 cut(s)	235, 548
SfaNI	GCATC	3 cut(s)	223, 358, 913
SfcI	CTRYAG	3 cut(s)	510, 564, 1272
SfiI	GGCCNNNNNGGCC	1 cut(s)	114
SinI	GGWCC	1 cut(s)	1015
SmiMI	CAYNNNNRTG	1 cut(s)	1348
SphI	GCATGC	2 cut(s)	1297, 1432
Sse9I	AATT	6 cut(s)	462, 585, 703, 779, 999, 1442
SsiI	CCGC	8 cut(s)	51, 118, 236, 371, 413, 808, 939, 1227
SspMI	CTAG	5 cut(s)	179, 528, 549, 582, 1097
SstI	GAGCTC	1 cut(s)	548
StyD4I	CCNGG	2 cut(s)	1124, 1324
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	733
TaqI	TCGA	6 cut(s)	290, 446, 474, 699, 991, 1357
TaqII	GACCGA	1 cut(s)	1402
TasI	AATT	6 cut(s)	462, 585, 703, 779, 999, 1442
TauI	GCSGC	2 cut(s)	53, 120
TfiI	GAWTC	2 cut(s)	443, 825
Tru1I	TTAA	6 cut(s)	426, 516, 588, 692, 798, 1555
Tru9I	TTAA	6 cut(s)	426, 516, 588, 692, 798, 1555
TscAI	CASTG	2 cut(s)	1350, 1439
TseFI	GTSAC	1 cut(s)	1301
TseI	GCWGC	7 cut(s)	59, 185, 238, 665, 929, 1100, 1271
Tsp45I	GTSAC	1 cut(s)	1301
TspDTI	ATGAA	6 cut(s)	17, 276, 516, 593, 1300, 1382
TspRI	CASTG	2 cut(s)	1350, 1439
VpaK11BI	GGWCC	1 cut(s)	1015
XapI	RAATTY	2 cut(s)	462, 1442
XbaI	TCTAGA	1 cut(s)	178
XceI	RCATGY	4 cut(s)	1297, 1432, 1454, 1546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1151
XspI	CTAG	5 cut(s)	179, 528, 549, 582, 1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.