Rh7DG441400

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008318
Physical Location & Seq
Reverse (-)
62683902 .. 62687857
3956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG441400.1

Sequence Viewer

Length: 1203 bp
ATGGGGATTTGTGATGCGGTGGCTGTTGCTAAAATCTTGAATGCAACTCTGGTTCTACCGCACCTTGAAGTTAATCCGGTGTGGCAAGATTGGAGTTCCTTTGAGGATATTTTTGATGTCGATCACTTTTTAGAAGTCCTACGCAATGAAGTTTCTATAGTTAAAGAACTTCCTAGTGAGTTTTCTTGGAGCTCTAGGGAGTATTATGCTACAGGCATACGGCCTACTAGAATTAAAACGGCACCTGTTCATGCTCCTGCTGAGTGGTATCTGGAAAATGTCTTGCCCATAATGCAGAGTTATGGAGTTGCTGCTATTTCCCCGTTCTCCCATCGTTTGACTTTCGACAATTTGCCTGAAAGCATTCAGCGCCTACGTTGTAAAGTGAACTTTCAAGCTTTAGCCTTTGTTCCTCATATAAGGGAATTGGGAGAAACCCTTGTTAATCGTCTCCGCAACCCTCCTATAAGAATCCAAAACTCAGAAACTGACTCACAAGAGGGAACAAATGACCTTGATAAACAGGGAGCTGGGAAGTTTGTTGTTTTGCATCTTCGCTTTGACAAAGATATGGCTGCTCATTCCGCCTGTGATTTTGGTGGTGGTAAAGCTGAGAAACTTGCTCTTGCAAAATATCGACAAGTAATTTGGCAGGGAAGGGTCCTAAAATCTCAGTTCACAGATGAGGAGCTGAGAGTTCAGGGGCGTTGCCCGTTGACGCCTGAAGAGATTGGATTGTTGCTAGCAGCTCTGGGCTTCAACAATAGCACCCGGCTTTATCTTGCTTCCCACAAGGTTTATGGCGGAGAAGCAAGGATCTCAACTCTGCGCAGATTATTTCCGCTACTGGAGGATAAGAAGAGCCTTACCTCTGCCGAGGAAAGGGCCAAGGTTGAAGGCAAGGCTTCTCTGTTGGCTGCAGTTGACTATTATGTGAGCATGCAAAGTGACATCTTCATTTCTGCTTCTCCGGGAAATATGCACAATGCACTGGTGTGTCATCGAGCTTATATGAACTTGAAGACTATTAGACCGAGCATGACCCTGTTGAGTAAGCTATTCTTGAATAAGAGCATGCAGTGGTCAGAGTTCCAACTTGCAGTTTTGGAAGGGCATAAAAATAGACAAGGGCAGATCAAGTTGAGAAAGGAGAAGCAATCAATATATACATATCCTGCTCCTGATTGCATGTGTCAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

400

Amino Acids

45.23

Weight (kDa)

8.55

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 2 - 338 1e-82 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 830
AccB1I GGYRCC 1 cut(s) 241
AciI CCGC 6 cut(s) 17, 59, 454, 585, 804, 842
AclWI GGATC 1 cut(s) 824
AcuI CTGAAG 1 cut(s) 744
AcyI GRCGYC 1 cut(s) 719
AfiI CCNNNNNNNGG 1 cut(s) 882
AgsI TTSAA 7 cut(s) 40, 68, 395, 760, 896, 1021, 1066
AleI CACNNNNGTG 1 cut(s) 994
AluBI AGCT 9 cut(s) 192, 398, 530, 611, 691, 749, 1007, 1057, 1199
AluI AGCT 9 cut(s) 192, 398, 530, 611, 691, 749, 1007, 1057, 1199
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 1 cut(s) 824
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 2 cut(s) 221, 885
ApeKI GCWGC 4 cut(s) 311, 575, 746, 917
ArsI GACNNNNNNTTYG 2 cut(s) 630, 662
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 2 cut(s) 372, 831
AspS9I GGNCC 2 cut(s) 661, 885
AsuC2I CCSGG 2 cut(s) 772, 972
AsuNHI GCTAGC 1 cut(s) 742
AvaII GGWCC 1 cut(s) 661
BanI GGYRCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 1028
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 4 cut(s) 298, 562, 758, 904
BccI CCATC 1 cut(s) 339
BceAI ACGGC 2 cut(s) 236, 255
BcnI CCSGG 2 cut(s) 772, 972
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 4 cut(s) 174, 195, 228, 743
BfmI CTRYAG 3 cut(s) 156, 210, 918
BfoI RGCGCY 1 cut(s) 373
BisI GCNGC 4 cut(s) 312, 576, 747, 918
BlsI GCNGC 4 cut(s) 313, 577, 748, 919
Bme1390I CCNGG 2 cut(s) 772, 972
Bme18I GGWCC 1 cut(s) 661
BmgT120I GGNCC 2 cut(s) 661, 885
BmiI GGNNCC 2 cut(s) 243, 662
BmrFI CCNGG 2 cut(s) 772, 972
BmsI GCATC 2 cut(s) 4, 559
BmtI GCTAGC 1 cut(s) 746
BpiI GAAGAC 1 cut(s) 1028
BpmI CTGGAG 1 cut(s) 869
BpuMI CCSGG 2 cut(s) 772, 972
BsaBI GATNNNNATC 1 cut(s) 120
BsaHI GRCGYC 1 cut(s) 719
BsaJI CCNNGG 2 cut(s) 876, 888
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 882
Bse1I ACTGG 2 cut(s) 852, 996
Bse3DI GCAATG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 876, 888
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 882
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 5 cut(s) 252, 495, 603, 683, 686
BseNI ACTGG 2 cut(s) 852, 996
BseRI GAGGAG 1 cut(s) 701
BseXI GCAGC 4 cut(s) 298, 562, 758, 904
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 2 cut(s) 223, 887
BshNI GGYRCC 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 3 cut(s) 77, 772, 971
BslI CCNNNNNNNGG 1 cut(s) 882
BsmAI GTCTC 1 cut(s) 455
BsmBI CGTCTC 1 cut(s) 455
BsmI GAATGC 2 cut(s) 46, 363
BsnI GGCC 2 cut(s) 223, 887
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 3 cut(s) 121, 816, 1134
BspACI CCGC 6 cut(s) 17, 59, 454, 585, 804, 842
BspANI GGCC 2 cut(s) 223, 887
BspCNI CTCAG 5 cut(s) 253, 494, 604, 684, 685
BspLI GGNNCC 2 cut(s) 243, 662
BspMAI CTGCAG 1 cut(s) 922
BspOI GCTAGC 1 cut(s) 746
BspPI GGATC 1 cut(s) 824
BspQI GCTCTTC 1 cut(s) 854
BspT107I GGYRCC 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 2 cut(s) 852, 996
BssECI CCNNGG 2 cut(s) 876, 888
BssMI GATC 3 cut(s) 121, 816, 1134
BssNI GRCGYC 1 cut(s) 719
BssT1I CCWWGG 1 cut(s) 888
Bst6I CTCTTC 2 cut(s) 720, 854
BstACI GRCGYC 1 cut(s) 719
BstC8I GCNNGC 3 cut(s) 744, 941, 1076
BstDEI CTNAG 5 cut(s) 261, 481, 612, 672, 692
BstH2I RGCGCY 1 cut(s) 373
BstHHI GCGC 2 cut(s) 372, 831
BstKTI GATC 3 cut(s) 124, 819, 1137
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 3 cut(s) 121, 816, 1134
BstMWI GCNNNNNNNGC 3 cut(s) 292, 369, 584
BstNSI RCATGY 3 cut(s) 943, 1078, 1192
BstSCI CCNGG 2 cut(s) 770, 970
BstSFI CTRYAG 3 cut(s) 156, 210, 918
BstV1I GCAGC 4 cut(s) 298, 562, 758, 904
BstV2I GAAGAC 1 cut(s) 1028
BstX2I RGATCY 1 cut(s) 816
BstYI RGATCY 1 cut(s) 816
BsuRI GGCC 2 cut(s) 223, 887
BtsI GCAGTG 1 cut(s) 1085
BtsIMutI CAGTG 2 cut(s) 989, 1085
Cac8I GCNNGC 3 cut(s) 744, 941, 1076
CaiI CAGNNNCTG 1 cut(s) 488
CfoI GCGC 2 cut(s) 372, 831
Cfr13I GGNCC 2 cut(s) 661, 885
CseI GACGC 1 cut(s) 727
CviAII CATG 5 cut(s) 251, 940, 1039, 1075, 1189
DdeI CTNAG 5 cut(s) 261, 481, 612, 672, 692
DpnI GATC 3 cut(s) 123, 818, 1136
DpnII GATC 3 cut(s) 121, 816, 1134
Eam1104I CTCTTC 2 cut(s) 720, 854
EarI CTCTTC 2 cut(s) 720, 854
EciI GGCGGA 2 cut(s) 574, 819
Ecl136II GAGCTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 888
Eco24I GRGCYC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 661
Eco53kI GAGCTC 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 744
EcoICRI GAGCTC 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 888
EcoT38I GRGCYC 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 888
Esp3I CGTCTC 1 cut(s) 455
FaeI CATG 5 cut(s) 254, 943, 1042, 1078, 1192
FalI AAGNNNNNCTT 2 cut(s) 1046, 1078
FatI CATG 5 cut(s) 250, 939, 1038, 1074, 1188
Fnu4HI GCNGC 4 cut(s) 312, 576, 747, 918
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 4 cut(s) 312, 576, 747, 918
FspBI CTAG 4 cut(s) 174, 195, 228, 743
FspI TGCGCA 1 cut(s) 830
GlaI GCGC 2 cut(s) 371, 830
GluI GCNGC 4 cut(s) 312, 576, 747, 918
GsaI CCCAGC 1 cut(s) 534
GsuI CTGGAG 1 cut(s) 869
HaeII RGCGCY 1 cut(s) 373
HaeIII GGCC 2 cut(s) 223, 887
HapII CCGG 3 cut(s) 77, 772, 971
HgaI GACGC 1 cut(s) 727
HhaI GCGC 2 cut(s) 372, 831
Hin1I GRCGYC 1 cut(s) 719
Hin1II CATG 5 cut(s) 254, 943, 1042, 1078, 1192
Hin6I GCGC 2 cut(s) 370, 829
HinP1I GCGC 2 cut(s) 370, 829
HincII GTYRAC 2 cut(s) 717, 925
HindII GTYRAC 2 cut(s) 717, 925
HindIII AAGCTT 2 cut(s) 396, 1197
HinfI GANTC 2 cut(s) 471, 491
HpaII CCGG 3 cut(s) 77, 772, 971
Hpy166II GTNNAC 4 cut(s) 388, 678, 717, 925
Hpy188I TCNGA 2 cut(s) 484, 1087
Hpy188III TCNNGA 4 cut(s) 37, 272, 1063, 1181
Hpy8I GTNNAC 4 cut(s) 388, 678, 717, 925
HpyAV CCTTC 3 cut(s) 651, 890, 1103
HpyCH4IV ACGT 1 cut(s) 376
HpyF10VI GCNNNNNNNGC 3 cut(s) 292, 369, 584
HpyF3I CTNAG 5 cut(s) 261, 481, 612, 672, 692
HpySE526I ACGT 1 cut(s) 376
Hsp92I GRCGYC 1 cut(s) 719
Hsp92II CATG 5 cut(s) 254, 943, 1042, 1078, 1192
HspAI GCGC 2 cut(s) 370, 829
Kzo9I GATC 3 cut(s) 121, 816, 1134
LguI GCTCTTC 1 cut(s) 854
LmnI GCTCC 5 cut(s) 189, 259, 527, 688, 1183
Lsp1109I GCAGC 4 cut(s) 298, 562, 758, 904
LweI GCATC 2 cut(s) 4, 559
MaeI CTAG 4 cut(s) 174, 195, 228, 743
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 1 cut(s) 947
MalI GATC 3 cut(s) 123, 818, 1136
MboI GATC 3 cut(s) 121, 816, 1134
MboII GAAGA 5 cut(s) 545, 737, 871, 946, 1033
MflI RGATCY 1 cut(s) 816
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 4 cut(s) 231, 349, 425, 645
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 1117
MnlI CCTC 8 cut(s) 97, 423, 471, 493, 679, 844, 871, 880
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 5 cut(s) 72, 162, 234, 444, 1201
MslI CAYNNNNRTG 1 cut(s) 994
MspI CCGG 3 cut(s) 77, 772, 971
MspR9I CCNGG 2 cut(s) 772, 972
Mva1269I GAATGC 2 cut(s) 46, 363
MwoI GCNNNNNNNGC 3 cut(s) 292, 369, 584
NciI CCSGG 2 cut(s) 772, 972
NdeII GATC 3 cut(s) 121, 816, 1134
NheI GCTAGC 1 cut(s) 742
NlaIII CATG 5 cut(s) 254, 943, 1042, 1078, 1192
NlaIV GGNNCC 2 cut(s) 243, 662
NmeAIII GCCGAG 1 cut(s) 901
NmuCI GTSAC 1 cut(s) 947
NsbI TGCGCA 1 cut(s) 830
NspI RCATGY 3 cut(s) 943, 1078, 1192
OliI CACNNNNGTG 1 cut(s) 994
PaeI GCATGC 2 cut(s) 943, 1078
PciSI GCTCTTC 1 cut(s) 854
PctI GAATGC 2 cut(s) 46, 363
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 471
PfoI TCCNGGA 1 cut(s) 970
PkrI GCNGC 4 cut(s) 313, 577, 748, 919
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
PpuMI RGGWCCY 1 cut(s) 661
Psp124BI GAGCTC 1 cut(s) 194
Psp5II RGGWCCY 1 cut(s) 661
PspFI CCCAGC 1 cut(s) 530
PspN4I GGNNCC 2 cut(s) 243, 662
PspPI GGNCC 2 cut(s) 661, 885
PspPPI RGGWCCY 1 cut(s) 661
PstI CTGCAG 1 cut(s) 922
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 1 cut(s) 816
RseI CAYNNNNRTG 1 cut(s) 994
SacI GAGCTC 1 cut(s) 194
SapI GCTCTTC 1 cut(s) 854
SaqAI TTAA 5 cut(s) 72, 162, 234, 444, 1201
SatI GCNGC 4 cut(s) 312, 576, 747, 918
Sau3AI GATC 3 cut(s) 121, 816, 1134
Sau96I GGNCC 2 cut(s) 661, 885
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 2 cut(s) 772, 972
SduI GDGCHC 1 cut(s) 194
SfaNI GCATC 2 cut(s) 4, 559
SfcI CTRYAG 3 cut(s) 156, 210, 918
SinI GGWCC 1 cut(s) 661
SmiMI CAYNNNNRTG 1 cut(s) 994
SphI GCATGC 2 cut(s) 943, 1078
Sse9I AATT 4 cut(s) 231, 349, 425, 645
SsiI CCGC 6 cut(s) 17, 59, 454, 585, 804, 842
SspMI CTAG 4 cut(s) 174, 195, 228, 743
SstI GAGCTC 1 cut(s) 194
StyD4I CCNGG 2 cut(s) 770, 970
StyI CCWWGG 1 cut(s) 888
TaiI ACGT 1 cut(s) 379
TaqI TCGA 4 cut(s) 120, 345, 637, 1003
TaqII GACCGA 1 cut(s) 1048
TasI AATT 4 cut(s) 231, 349, 425, 645
TfiI GAWTC 1 cut(s) 471
Tru1I TTAA 5 cut(s) 72, 162, 234, 444, 1201
Tru9I TTAA 5 cut(s) 72, 162, 234, 444, 1201
TscAI CASTG 2 cut(s) 996, 1085
TseFI GTSAC 1 cut(s) 947
TseI GCWGC 4 cut(s) 311, 575, 746, 917
Tsp45I GTSAC 1 cut(s) 947
TspDTI ATGAA 4 cut(s) 162, 239, 946, 1028
TspRI CASTG 2 cut(s) 996, 1085
VpaK11BI GGWCC 1 cut(s) 661
XceI RCATGY 3 cut(s) 943, 1078, 1192
XcmI CCANNNNNNNNNTGG 1 cut(s) 797
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 4 cut(s) 174, 195, 228, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.