Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004308

Physical Location & Seq

Genomic Coordinates Forward (+)

36384668 .. 36387867

Gene Structure 3200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCAACGGGCAGCCGGCGGAAGCAGTGGCGGCGAATTGAGTCGAGGAGGAGGCGGACTCGGGCGGTTCAGCTCCGCCCCAGCCACATGGTTAGAAGCGCTGCTTGAAGAGGACGAAGAGGACCCACTGAAGCCCACCCAGTGCTTGACTGAGCTTCTTGCTGACAACACACCTTGTACGACGGTGGATCCAGCGTTGTATGAGGCTGCAGATGGGTATCTTAGTCGTCAGCATAGCTCACCCGCTGATTTTAATGGCGGCGGTGGCGGGTCGGGGGGATATTTCTCGGGGTTTGGAATTCCGGGCCACCTCGACCTTGCGTCGTCGTCGTCGTTGTCCCCAAACAGCTCTTCTTCCTCTGCTAATAAGAGGGTTCGGGAGCAGCACCAGTTTTCCTCCGACTCACATGTGAAAGTGGAGGAAGGTGGGTTGGAGGATTCGGTGAGTTGCAGGGTGAGGGCCAAGCGTGGTTGTGCTACACATCCCAGGAGCATTGCTGAAAGGGTCCGGAGGACTAGGATCAGTGACCGCATAAGGAAGCTACAAGAGCTGGTGCCCAACATGGATAAGCAAACTAATACTGCCGATATGTTAGACGAGGCAGTGGAGTATGTGAAGTTTCTTCAGAAGCAGATTCAGGAACTTTTGGAGGATCAACTCAGATGCAAATGCATAGCTAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

229

Amino Acids

24.62

Weight (kDa)

5.49

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	164 - 209	1.3e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	167 - 212	7.3e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35460 AT1G35460 AT4G09180
fragaria_vesca	FvH4_5g31910 FvH4_5g31910 FvH4_5g31910
malus_domestica	MD08G1218800.v1.1 MD15G1407200.v1.1
prunus_persica	Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1
pyrus_communis	pycom08g18940 pycom15g36340
rosa_chinensis	RchiOBHm_Chr7g0227911
rosa_laevigata	RLG00000001604
rosa_multiflora	Rmu_co8004144.1_g000001 Rmu_sc0007737.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231770
rosa_rugosa	Rorug07G0244500.1
rosa_samantha	Rh1CG340400 Rh1DG357700 Rh7AG397700 Rh7BG379200 Rh7CG415900 Rh7DG393200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	553
AccIII	TCCGGA	1 cut(s)	507
AclWI	GGATC	4 cut(s)	182, 195, 527, 660
AcsI	RAATTY	1 cut(s)	297
AcuI	CTGAAG	2 cut(s)	149, 608
AdeI	CACNNNGTG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	178
AfeI	AGCGCT	1 cut(s)	99
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	1 cut(s)	107
AhdI	GACNNNNNGTC	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	485
AjuI	GAANNNNNNNTTGG	2 cut(s)	334, 366
AluBI	AGCT	7 cut(s)	72, 154, 237, 348, 541, 550, 677
AluI	AGCT	7 cut(s)	72, 154, 237, 348, 541, 550, 677
AlwI	GGATC	4 cut(s)	182, 195, 527, 660
Ama87I	CYCGRG	2 cut(s)	59, 286
Aor13HI	TCCGGA	1 cut(s)	507
Aor51HI	AGCGCT	1 cut(s)	99
AoxI	GGCC	2 cut(s)	304, 459
ApeKI	GCWGC	4 cut(s)	11, 100, 206, 382
ApoI	RAATTY	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	4 cut(s)	121, 304, 459, 505
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	3 cut(s)	231, 454, 466
AvaI	CYCGRG	2 cut(s)	59, 286
AvaII	GGWCC	2 cut(s)	121, 505
BaeGI	GKGCMC	1 cut(s)	558
BamHI	GGATCC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	553
BbvI	GCAGC	4 cut(s)	23, 87, 193, 394
BccI	CCATC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	303
BfaI	CTAG	1 cut(s)	516
BfmI	CTRYAG	1 cut(s)	207
BfoI	RGCGCY	1 cut(s)	101
BisI	GCNGC	6 cut(s)	12, 31, 101, 207, 259, 383
BlsI	GCNGC	6 cut(s)	13, 32, 102, 208, 260, 384
Bme1390I	CCNGG	2 cut(s)	303, 487
Bme18I	GGWCC	2 cut(s)	121, 505
BmeRI	GACNNNNNGTC	1 cut(s)	319
BmeT110I	CYCGRG	2 cut(s)	59, 286
BmgT120I	GGNCC	4 cut(s)	121, 304, 459, 505
BmiI	GGNNCC	4 cut(s)	123, 189, 506, 555
BmrFI	CCNGG	2 cut(s)	303, 487
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	1 cut(s)	653
BmuI	ACTGGG	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
Bpu10I	CCTNAGC	1 cut(s)	678
BpuMI	CCSGG	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	485
BsaWI	WCCGGW	1 cut(s)	507
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	139, 388
Bse3DI	GCAATG	1 cut(s)	492
Bse8I	GATNNNNATC	1 cut(s)	216
BseAI	TCCGGA	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	487
BseDI	CCNNGG	1 cut(s)	485
BseGI	GGATG	1 cut(s)	481
BseJI	GATNNNNATC	1 cut(s)	216
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	2 cut(s)	141, 673
BseNI	ACTGG	2 cut(s)	139, 388
BseRI	GAGGAG	2 cut(s)	60, 63
BseSI	GKGCMC	1 cut(s)	558
BseXI	GCAGC	4 cut(s)	23, 87, 193, 394
BseYI	CCCAGC	1 cut(s)	79
BshFI	GGCC	2 cut(s)	306, 461
BshNI	GGYRCC	1 cut(s)	553
BsiHKCI	CYCGRG	2 cut(s)	59, 286
BsiSI	CCGG	3 cut(s)	15, 302, 508
BslFI	GGGAC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	306, 461
BsoBI	CYCGRG	2 cut(s)	59, 286
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp13I	TCCGGA	1 cut(s)	507
Bsp143I	GATC	3 cut(s)	187, 519, 652
BspANI	GGCC	2 cut(s)	306, 461
BspCNI	CTCAG	2 cut(s)	142, 672
BspEI	TCCGGA	1 cut(s)	507
BspLI	GGNNCC	4 cut(s)	123, 189, 506, 555
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	4 cut(s)	182, 195, 527, 660
BspQI	GCTCTTC	1 cut(s)	355
BspT107I	GGYRCC	1 cut(s)	553
BsrDI	GCAATG	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	139, 388
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	485
BssMI	GATC	3 cut(s)	187, 519, 652
Bst2UI	CCWGG	1 cut(s)	487
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	3 cut(s)	102, 111, 355
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	4 cut(s)	150, 221, 659, 678
BstF5I	GGATG	1 cut(s)	481
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	3 cut(s)	190, 522, 655
BstMBI	GATC	3 cut(s)	187, 519, 652
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 264, 547
BstNI	CCWGG	1 cut(s)	487
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	301, 485
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	558
BstV1I	GCAGC	4 cut(s)	23, 87, 193, 394
BstX2I	RGATCY	1 cut(s)	187
BstXI	CCANNNNNNTGG	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	306, 461
BtsCI	GGATG	1 cut(s)	481
BtsI	GCAGTG	2 cut(s)	31, 609
BtsIMutI	CAGTG	5 cut(s)	31, 125, 146, 529, 609
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	4 cut(s)	121, 304, 459, 505
CseI	GACGC	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	177
CviAII	CATG	3 cut(s)	87, 407, 562
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	4 cut(s)	150, 221, 659, 678
DpnI	GATC	3 cut(s)	189, 521, 654
DpnII	GATC	3 cut(s)	187, 519, 652
DraIII	CACNNNGTG	1 cut(s)	141
DriI	GACNNNNNGTC	1 cut(s)	319
Eam1104I	CTCTTC	3 cut(s)	102, 111, 355
Eam1105I	GACNNNNNGTC	1 cut(s)	319
EarI	CTCTTC	3 cut(s)	102, 111, 355
EciI	GGCGGA	3 cut(s)	33, 64, 69
Eco47I	GGWCC	2 cut(s)	121, 505
Eco47III	AGCGCT	1 cut(s)	99
Eco57I	CTGAAG	2 cut(s)	149, 608
Eco88I	CYCGRG	2 cut(s)	59, 286
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	485
EcoT22I	ATGCAT	1 cut(s)	674
FaeI	CATG	3 cut(s)	90, 410, 565
FaiI	YATR	9 cut(s)	88, 201, 234, 408, 533, 563, 590, 612, 674
FalI	AAGNNNNNCTT	2 cut(s)	87, 119
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	3 cut(s)	86, 406, 561
FauI	CCCGC	2 cut(s)	250, 260
Fnu4HI	GCNGC	6 cut(s)	12, 31, 101, 207, 259, 383
FokI	GGATG	1 cut(s)	468
Fsp4HI	GCNGC	6 cut(s)	12, 31, 101, 207, 259, 383
FspBI	CTAG	1 cut(s)	516
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	6 cut(s)	12, 31, 101, 207, 259, 383
GsaI	CCCAGC	1 cut(s)	83
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	306, 461
HapII	CCGG	3 cut(s)	15, 302, 508
HgaI	GACGC	1 cut(s)	309
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	3 cut(s)	90, 410, 565
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	5 cut(s)	40, 57, 401, 437, 634
HpaII	CCGG	3 cut(s)	15, 302, 508
HphI	GGTGA	3 cut(s)	231, 454, 466
Hpy188I	TCNGA	3 cut(s)	400, 627, 662
Hpy188III	TCNNGA	3 cut(s)	377, 508, 638
Hpy99I	CGWCG	5 cut(s)	184, 325, 328, 331, 334
HpyAV	CCTTC	1 cut(s)	416
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	5 cut(s)	4, 209, 450, 666, 672
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 264, 547
HpyF3I	CTNAG	4 cut(s)	150, 221, 659, 678
Hsp92II	CATG	3 cut(s)	90, 410, 565
HspAI	GCGC	1 cut(s)	98
Kpn2I	TCCGGA	1 cut(s)	507
KroI	GCCGGC	1 cut(s)	14
KroNI	GCCGGC	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	187, 519, 652
LguI	GCTCTTC	1 cut(s)	355
LmnI	GCTCC	3 cut(s)	77, 379, 489
Lsp1109I	GCAGC	4 cut(s)	23, 87, 193, 394
LweI	GCATC	1 cut(s)	653
MaeI	CTAG	1 cut(s)	516
MaeIII	GTNAC	1 cut(s)	524
MalI	GATC	3 cut(s)	189, 521, 654
MboI	GATC	3 cut(s)	187, 519, 652
MboII	GAAGA	5 cut(s)	119, 128, 342, 345, 614
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	2 cut(s)	35, 297
MlyI	GAGTC	3 cut(s)	49, 51, 395
MmeI	TCCRAC	2 cut(s)	411, 423
Mph1103I	ATGCAT	1 cut(s)	674
MroI	TCCGGA	1 cut(s)	507
MroNI	GCCGGC	1 cut(s)	14
MseI	TTAA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	3 cut(s)	15, 302, 508
MspR9I	CCNGG	2 cut(s)	303, 487
MvaI	CCWGG	1 cut(s)	487
MwoI	GCNNNNNNNGC	3 cut(s)	30, 264, 547
NaeI	GCCGGC	1 cut(s)	16
NciI	CCSGG	1 cut(s)	303
NdeII	GATC	3 cut(s)	187, 519, 652
NgoMIV	GCCGGC	1 cut(s)	14
NlaIII	CATG	3 cut(s)	90, 410, 565
NlaIV	GGNNCC	4 cut(s)	123, 189, 506, 555
NmuCI	GTSAC	1 cut(s)	524
NsiI	ATGCAT	1 cut(s)	674
NspI	RCATGY	1 cut(s)	410
PciI	ACATGT	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	329
PdiI	GCCGGC	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	437, 634
PkrI	GCNGC	6 cut(s)	13, 32, 102, 208, 260, 384
PleI	GAGTC	3 cut(s)	48, 51, 395
PpsI	GAGTC	3 cut(s)	48, 51, 395
PpuMI	RGGWCCY	1 cut(s)	121
PscI	ACATGT	1 cut(s)	406
Psp5II	RGGWCCY	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	485
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	4 cut(s)	123, 189, 506, 555
PspPI	GGNCC	4 cut(s)	121, 304, 459, 505
PspPPI	RGGWCCY	1 cut(s)	121
PstI	CTGCAG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	6 cut(s)	12, 31, 101, 207, 259, 383
Sau3AI	GATC	3 cut(s)	187, 519, 652
Sau96I	GGNCC	4 cut(s)	121, 304, 459, 505
SchI	GAGTC	3 cut(s)	49, 51, 395
ScrFI	CCNGG	2 cut(s)	303, 487
SduI	GDGCHC	1 cut(s)	558
SfaNI	GCATC	1 cut(s)	653
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	2 cut(s)	121, 505
Sse9I	AATT	2 cut(s)	35, 297
SspMI	CTAG	1 cut(s)	516
StyD4I	CCNGG	2 cut(s)	301, 485
TaaI	ACNGT	1 cut(s)	184
TaqI	TCGA	2 cut(s)	43, 312
TasI	AATT	2 cut(s)	35, 297
TauI	GCSGC	2 cut(s)	33, 261
TfiI	GAWTC	2 cut(s)	437, 634
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	5 cut(s)	31, 132, 146, 529, 609
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	4 cut(s)	11, 100, 206, 382
Tsp45I	GTSAC	1 cut(s)	524
TspRI	CASTG	5 cut(s)	31, 132, 146, 529, 609
VpaK11BI	GGWCC	2 cut(s)	121, 505
XapI	RAATTY	1 cut(s)	297
XceI	RCATGY	1 cut(s)	410
XspI	CTAG	1 cut(s)	516
Zsp2I	ATGCAT	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.