Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008068

Physical Location & Seq

Genomic Coordinates Forward (+)

36437893 .. 36440731

Gene Structure 2839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAATCTGGCGGTGGTTCTGGTGGCGGTGGCGGTGGTTTTGTTCGGCCGATTTTGCATCACCGACGCCAATGTGGTGCTGATCGGGAACAACGTTACTCTCTCTCTCGATGACATGGAAGCTAGTTTCGCTCCGGCGGTTAAGGGTTCGGGGGAATGCGGAGTATTGTATTTGGCAGAGCCTCCTGATGCGTGCTCGACATTGACTAATCAAGTCGAACAAGGCAAGAATCGTAGCTCCCCTTTTGTTTTGATCGTAAGAGGAGGGTGTATTTTTGAGGATAAAGTTAGAAGAGCTCAAAAGGCCGGCTTCAAAGCTGCAATTATCTACGACAACGAAGTTAGCAGCGTCTTGGTTTCAATGGCAGGAAATTCAGCTGGTATAAAAATATACGCTGTGTTTGTTTCGAAAGCTTCTGGTGAACTACTAAAGAAGTACGCTGGACTTACTAACATGGAGCTGTGGCTAATTGCAAGCTTTGAGAATTCAGCGTGGTCAATCATGGCAATCTCTTTCATTTCATTGCTTGCCATGTCTGCAGTGCTGGCTACTTGTTTTTTCGTTCGTAGGCATCGAATAAGACGAGAAAGGCCTCAAGCTTCTCGTGTTCGAGAATTTCATGGGATGAGCAAGCGCTTAGTAAAAGCAATGCCAAGTTTGATATTTACCGCAGTTTTAGAGGACAACTGTACATCAAGAACATGTGCTATATGTCTTGAGGACTATAGTGTTGGAGAAAAACTCAGGATTCTGCCATGTCGTCATAAATTTCATGCTTTCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGCAAGCGTGATGCAAGAGCTAACACAGGTGATCTACCCGCCTCAGAATCCACACCATTGCTTTCATCCAGTCCATCCTCTGTGGCATCTTCTGTACTTTCATCTATGATCGATCATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000209 GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031090 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0098588 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

316

Amino Acids

34.35

Weight (kDa)

8.83

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	59 - 143	7.2e-13	PA domain
zf-RING_2	PF13639	234 - 277	1.3e-12	Ring finger domain
zf-RING_11	PF17123	235 - 262	5.1e-10	RING-like zinc finger
zf-C3HC4	PF00097	235 - 276	2.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	235 - 276	6.5e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71980
fragaria_vesca	FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950 FvH4_5g30950
malus_domestica	MD08G1219500.v1.1 MD15G1408100.v1.1
prunus_persica	Prupe.1G553100_v2.0.a1
pyrus_communis	pycom08g19050 pycom15g36420 pycom15g36430
rosa_chinensis	RchiOBHm_Chr7g0226311
rosa_laevigata	RLG00000001752
rosa_multiflora	Rmu_sc0004322.1_g000023
rosa_roxburghii	Rroxscaffold_3G00233040
rosa_rugosa	Rorug07G0236300 Rorug07G0236400 Rorug07G0236500
rosa_samantha	Rh7AG383500 Rh7BG370300 Rh7CG403100 Rh7DG381900
rosa_wichuraiana	Rw7G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	11, 26, 32, 137, 159, 669, 864
AclI	AACGTT	1 cut(s)	93
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	4 cut(s)	370, 484, 614, 767
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	3 cut(s)	437, 691, 921
AfeI	AGCGCT	1 cut(s)	635
AflIII	ACRYGT	1 cut(s)	701
AgsI	TTSAA	2 cut(s)	313, 360
AloI	GAACNNNNNNTCC	2 cut(s)	802, 834
Alw21I	GWGCWC	2 cut(s)	197, 298
Aor51HI	AGCGCT	1 cut(s)	635
AoxI	GGCC	3 cut(s)	46, 303, 590
ApeKI	GCWGC	2 cut(s)	317, 345
ApoI	RAATTY	4 cut(s)	370, 484, 614, 767
AspLEI	GCGC	1 cut(s)	636
AsuHPI	GGTGA	3 cut(s)	52, 431, 866
AsuII	TTCGAA	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	298
BauI	CACGAG	1 cut(s)	603
Bbv12I	GWGCWC	2 cut(s)	197, 298
BbvI	GCAGC	2 cut(s)	304, 357
BccI	CCATC	1 cut(s)	907
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	2 cut(s)	537, 724
BfoI	RGCGCY	1 cut(s)	637
BisI	GCNGC	2 cut(s)	318, 346
BlsI	GCNGC	2 cut(s)	319, 347
BmsI	GCATC	5 cut(s)	66, 178, 580, 826, 920
BplI	GAGNNNNNCTC	2 cut(s)	726, 758
Bpu14I	TTCGAA	1 cut(s)	407
BpuEI	CTTGAG	2 cut(s)	579, 737
Bsa29I	ATCGAT	1 cut(s)	936
BsaHI	GRCGYC	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	821, 894
Bse3DI	GCAATG	3 cut(s)	521, 654, 881
BseCI	ATCGAT	1 cut(s)	936
BseGI	GGATG	3 cut(s)	630, 890, 899
BseMI	GCAATG	3 cut(s)	521, 654, 881
BseMII	CTCAG	2 cut(s)	757, 882
BseNI	ACTGG	2 cut(s)	821, 894
BseRI	GAGGAG	1 cut(s)	276
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	304, 357
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	3 cut(s)	48, 305, 592
BshVI	ATCGAT	1 cut(s)	936
BsiEI	CGRYCG	1 cut(s)	49
BsiHKAI	GWGCWC	2 cut(s)	197, 298
BsiSI	CCGG	2 cut(s)	134, 306
BsmI	GAATGC	1 cut(s)	161
BsnI	GGCC	3 cut(s)	48, 305, 592
Bsp119I	TTCGAA	1 cut(s)	407
Bsp1286I	GDGCHC	2 cut(s)	197, 298
Bsp1407I	TGTACA	1 cut(s)	689
Bsp143I	GATC	5 cut(s)	81, 252, 856, 933, 937
BspACI	CCGC	7 cut(s)	11, 26, 32, 137, 159, 669, 864
BspANI	GGCC	3 cut(s)	48, 305, 592
BspCNI	CTCAG	2 cut(s)	756, 881
BspDI	ATCGAT	1 cut(s)	936
BspMAI	CTGCAG	1 cut(s)	541
BspQI	GCTCTTC	1 cut(s)	286
BspT104I	TTCGAA	1 cut(s)	407
BsrDI	GCAATG	3 cut(s)	521, 654, 881
BsrFI	RCCGGY	1 cut(s)	305
BsrGI	TGTACA	1 cut(s)	689
BsrI	ACTGG	2 cut(s)	821, 894
BssAI	RCCGGY	1 cut(s)	305
BssMI	GATC	5 cut(s)	81, 252, 856, 933, 937
BssNI	GRCGYC	1 cut(s)	66
BssSI	CACGAG	1 cut(s)	603
Bst2BI	CACGAG	1 cut(s)	603
Bst4CI	ACNGT	1 cut(s)	689
Bst6I	CTCTTC	1 cut(s)	286
BstACI	GRCGYC	1 cut(s)	66
BstAUI	TGTACA	1 cut(s)	689
BstBI	TTCGAA	1 cut(s)	407
BstC8I	GCNNGC	7 cut(s)	193, 307, 475, 528, 546, 632, 830
BstDEI	CTNAG	3 cut(s)	637, 743, 868
BstF5I	GGATG	3 cut(s)	630, 890, 899
BstH2I	RGCGCY	1 cut(s)	637
BstHHI	GCGC	1 cut(s)	636
BstKTI	GATC	5 cut(s)	84, 255, 859, 936, 940
BstMBI	GATC	5 cut(s)	81, 252, 856, 933, 937
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 128, 302, 536, 545
BstNSI	RCATGY	1 cut(s)	705
BstSFI	CTRYAG	2 cut(s)	537, 724
BstV1I	GCAGC	2 cut(s)	304, 357
BstZI	CGGCCG	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	936
BsuRI	GGCC	3 cut(s)	48, 305, 592
BsuTUI	ATCGAT	1 cut(s)	936
BtsCI	GGATG	3 cut(s)	630, 890, 899
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	7 cut(s)	193, 307, 475, 528, 546, 632, 830
CfoI	GCGC	1 cut(s)	636
Cfr10I	RCCGGY	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	936
CseI	GACGC	2 cut(s)	74, 337
Csp6I	GTAC	3 cut(s)	436, 690, 920
CviAII	CATG	9 cut(s)	115, 454, 502, 532, 620, 702, 756, 773, 804
CviQI	GTAC	3 cut(s)	436, 690, 920
DdeI	CTNAG	3 cut(s)	637, 743, 868
DpnI	GATC	5 cut(s)	83, 254, 858, 935, 939
DpnII	GATC	5 cut(s)	81, 252, 856, 933, 937
EaeI	YGGCCR	1 cut(s)	46
EagI	CGGCCG	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Ecl136II	GAGCTC	1 cut(s)	296
EclXI	CGGCCG	1 cut(s)	46
Eco147I	AGGCCT	1 cut(s)	592
Eco24I	GRGCYC	1 cut(s)	298
Eco47III	AGCGCT	1 cut(s)	635
Eco52I	CGGCCG	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	296
EcoICRI	GAGCTC	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	298
FaeI	CATG	9 cut(s)	118, 457, 505, 535, 623, 705, 759, 776, 807
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	9 cut(s)	114, 453, 501, 531, 619, 701, 755, 772, 803
FauI	CCCGC	1 cut(s)	871
Fnu4HI	GCNGC	2 cut(s)	318, 346
FokI	GGATG	3 cut(s)	637, 877, 886
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	2 cut(s)	318, 346
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	1 cut(s)	635
GluI	GCNGC	2 cut(s)	318, 346
HaeII	RGCGCY	1 cut(s)	637
HaeIII	GGCC	3 cut(s)	48, 305, 592
HapII	CCGG	2 cut(s)	134, 306
HgaI	GACGC	2 cut(s)	74, 337
HhaI	GCGC	1 cut(s)	636
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	9 cut(s)	118, 457, 505, 535, 623, 705, 759, 776, 807
Hin6I	GCGC	1 cut(s)	634
HinP1I	GCGC	1 cut(s)	634
HindIII	AAGCTT	3 cut(s)	411, 475, 597
HinfI	GANTC	5 cut(s)	4, 229, 748, 788, 872
HpaII	CCGG	2 cut(s)	134, 306
HphI	GGTGA	3 cut(s)	52, 431, 866
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	1 cut(s)	871
Hpy188III	TCNNGA	7 cut(s)	85, 107, 185, 611, 696, 716, 745
Hpy8I	GTNNAC	1 cut(s)	422
Hpy99I	CGWCG	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	689
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	6 cut(s)	57, 320, 473, 539, 828, 839
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 128, 302, 536, 545
HpyF3I	CTNAG	3 cut(s)	637, 743, 868
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	9 cut(s)	118, 457, 505, 535, 623, 705, 759, 776, 807
HspAI	GCGC	1 cut(s)	634
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
Kzo9I	GATC	5 cut(s)	81, 252, 856, 933, 937
LguI	GCTCTTC	1 cut(s)	286
LmnI	GCTCC	3 cut(s)	136, 242, 457
Lsp1109I	GCAGC	2 cut(s)	304, 357
LweI	GCATC	5 cut(s)	66, 178, 580, 826, 920
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	5 cut(s)	83, 254, 858, 935, 939
MboI	GATC	5 cut(s)	81, 252, 856, 933, 937
MboII	GAAGA	2 cut(s)	303, 906
MhlI	GDGCHC	2 cut(s)	197, 298
MluCI	AATT	6 cut(s)	321, 370, 468, 484, 614, 767
MmeI	TCCRAC	1 cut(s)	712
MnlI	CCTC	9 cut(s)	192, 254, 257, 271, 603, 673, 712, 877, 913
MroNI	GCCGGC	1 cut(s)	305
MseI	TTAA	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	2 cut(s)	134, 306
Mva1269I	GAATGC	1 cut(s)	161
MwoI	GCNNNNNNNGC	5 cut(s)	54, 128, 302, 536, 545
NaeI	GCCGGC	1 cut(s)	307
NdeII	GATC	5 cut(s)	81, 252, 856, 933, 937
NgoMIV	GCCGGC	1 cut(s)	305
NlaIII	CATG	9 cut(s)	118, 457, 505, 535, 623, 705, 759, 776, 807
NspI	RCATGY	1 cut(s)	705
NspV	TTCGAA	1 cut(s)	407
PceI	AGGCCT	1 cut(s)	592
PciI	ACATGT	1 cut(s)	701
PciSI	GCTCTTC	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	3 cut(s)	90, 571, 580
PctI	GAATGC	1 cut(s)	161
PdiI	GCCGGC	1 cut(s)	307
PfeI	GAWTC	5 cut(s)	4, 229, 748, 788, 872
PkrI	GCNGC	2 cut(s)	319, 347
PscI	ACATGT	1 cut(s)	701
Psp124BI	GAGCTC	1 cut(s)	298
Psp1406I	AACGTT	1 cut(s)	93
PstI	CTGCAG	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	3 cut(s)	437, 691, 921
RsaNI	GTAC	3 cut(s)	436, 690, 920
SacI	GAGCTC	1 cut(s)	298
SapI	GCTCTTC	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	318, 346
Sau3AI	GATC	5 cut(s)	81, 252, 856, 933, 937
SduI	GDGCHC	2 cut(s)	197, 298
SfaNI	GCATC	5 cut(s)	66, 178, 580, 826, 920
SfcI	CTRYAG	2 cut(s)	537, 724
SfuI	TTCGAA	1 cut(s)	407
SmlI	CTYRAG	2 cut(s)	594, 716
SmoI	CTYRAG	2 cut(s)	594, 716
Sse9I	AATT	6 cut(s)	321, 370, 468, 484, 614, 767
SseBI	AGGCCT	1 cut(s)	592
SsiI	CCGC	7 cut(s)	11, 26, 32, 137, 159, 669, 864
SspMI	CTAG	1 cut(s)	123
SstI	GAGCTC	1 cut(s)	298
StuI	AGGCCT	1 cut(s)	592
TaaI	ACNGT	1 cut(s)	689
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	7 cut(s)	108, 197, 216, 407, 574, 610, 936
TasI	AATT	6 cut(s)	321, 370, 468, 484, 614, 767
TatI	WGTACW	2 cut(s)	689, 919
TfiI	GAWTC	5 cut(s)	4, 229, 748, 788, 872
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	546
TseI	GCWGC	2 cut(s)	317, 345
TspDTI	ATGAA	8 cut(s)	17, 505, 510, 608, 761, 792, 879, 915
TspRI	CASTG	1 cut(s)	546
XapI	RAATTY	4 cut(s)	370, 484, 614, 767
XceI	RCATGY	1 cut(s)	705
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.