Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007455

Physical Location & Seq

Genomic Coordinates Forward (+)

38063397 .. 38063636

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGCTGCAGTGGCAGAGTCGTGGATGAGCGAGCTGAATAAGCTGAAAGAGAAGTTAGGGGCTAAGAAGCGATTGGTGTTGTCATCGAAAGCTGAACAACAACAGCAAGAACAACGAGAGTTTAAGGAAGCAAGAAAGGAGAGGAGCTACAGGATGGTTCAGATCCAGAGGGACTTGGACTCTTCTTCGCTTTCAGAAGACACTGTGTGTTTGTTTATCGATCGCTTTGTGCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

80

Amino Acids

9.34

Weight (kDa)

8.85

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15960
fragaria_vesca	FvH4_2g07390
prunus_persica	Prupe.8G110900_v2.0.a1 Prupe.8G111400_v2.0.a1 Prupe.8G111600_v2.0.a1 Prupe.8G111800_v2.0.a1 Prupe.8G112000_v2.0.a1 Prupe.8G112200_v2.0.a1
pyrus_communis	pycom10g06800 pycom15g38220
rosa_chinensis	RchiOBHm_Chr5g0033931 RchiOBHm_Chr6g0260831
rosa_laevigata	RLG00000014482
rosa_multiflora	Rmu_sc0007732.1_g000002 Rmu_sc0014629.1_g000002 Rmu_sc0029234.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207410
rosa_rugosa	Rorug02G0325000 Rorug05G0593100
rosa_samantha	Rh6AG112400 Rh6BG106300 Rh6CG103200 Rh6DG094400
rosa_wichuraiana	Rw6G009540 Rw6G009570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	157
AdeI	CACNNNGTG	1 cut(s)	207
AluBI	AGCT	4 cut(s)	34, 43, 92, 147
AluI	AGCT	4 cut(s)	34, 43, 92, 147
AlwI	GGATC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	204
BccI	CCATC	1 cut(s)	148
BfmI	CTRYAG	2 cut(s)	6, 148
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BpiI	GAAGAC	1 cut(s)	204
Bsa29I	ATCGAT	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	233
BseCI	ATCGAT	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	233
BseGI	GGATG	2 cut(s)	30, 159
BseRI	GAGGAG	1 cut(s)	157
Bsh1285I	CGRYCG	1 cut(s)	223
BshVI	ATCGAT	1 cut(s)	219
BsiEI	CGRYCG	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	185
Bsp143I	GATC	2 cut(s)	162, 220
BspDI	ATCGAT	1 cut(s)	219
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	2 cut(s)	162, 220
BssT1I	CCWWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	30, 159
BstKTI	GATC	2 cut(s)	165, 223
BstMBI	GATC	2 cut(s)	162, 220
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 40
BstSFI	CTRYAG	2 cut(s)	6, 148
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
Bsu15I	ATCGAT	1 cut(s)	219
BsuTUI	ATCGAT	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	30, 159
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	15, 201
Cac8I	GCNNGC	1 cut(s)	32
ClaI	ATCGAT	1 cut(s)	219
CviJI	RGCY	6 cut(s)	5, 34, 43, 62, 92, 147
CviKI_1	RGCY	6 cut(s)	5, 34, 43, 62, 92, 147
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	2 cut(s)	164, 222
DpnII	GATC	2 cut(s)	162, 220
DraIII	CACNNNGTG	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	233
FaqI	GGGAC	1 cut(s)	185
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	37, 166
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	17, 179
Hpy188I	TCNGA	2 cut(s)	162, 196
Hpy188III	TCNNGA	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 40
HpyF3I	CTNAG	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	162, 220
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	2 cut(s)	136, 179
MalI	GATC	2 cut(s)	164, 222
MboI	GATC	2 cut(s)	162, 220
MboII	GAAGA	3 cut(s)	174, 177, 209
MflI	RGATCY	1 cut(s)	162
MlyI	GAGTC	2 cut(s)	26, 173
MnlI	CCTC	2 cut(s)	135, 162
MseI	TTAA	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	11, 40
NdeII	GATC	2 cut(s)	162, 220
PkrI	GCNGC	1 cut(s)	7
Ple19I	CGATCG	1 cut(s)	223
PleI	GAGTC	2 cut(s)	25, 173
PpsI	GAGTC	2 cut(s)	25, 173
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	162
PvuI	CGATCG	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	162, 220
SchI	GAGTC	2 cut(s)	26, 173
SetI	ASST	4 cut(s)	36, 45, 94, 149
SfcI	CTRYAG	2 cut(s)	6, 148
SgeI	CNNG	8 cut(s)	33, 43, 119, 128, 144, 163, 178, 187
StyI	CCWWGG	1 cut(s)	233
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	2 cut(s)	86, 219
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	15, 208
TseI	GCWGC	1 cut(s)	5
TspRI	CASTG	2 cut(s)	15, 208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.