Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007732.1

Orthogroup ID

OG0007455

Physical Location & Seq

Genomic Coordinates Reverse (-)

20991 .. 27110

Gene Structure 6120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007732.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgccaatatgtattctgcatcgtacatctgcttaccaatgcaatcagttcgattttgcacagctcgtgtctcagagagaccatggtcttacatttgcaggcaataaaacccgacaccggactccggtcaccgaattcacgtggccggagatcggtcaccggatccggccattggtgatcagatttcggtggccggtgactggattctggcaattgatttcggtggccggtgactggattctggcaattggtcaccaaatttcggtgattgatgatcagtttccggcggccggtcattggattctggcgattggtaaatggattctggcgattgatgagactcctgctatcattcaggatgttctctatgaggataattgtggtggctcttctgtagcacgggtggtggatgtatgggtgagcgagctggggaagctgaaggagaaggttggggccaagaagcggtttctgtggtcgtcgaagaaggtgaaacatgctgaaggaggagatgagggtgaggttgatcagcaacaacaaccagctgtagctgctgcagctcatgaaggtgcggtgatggagactacggttagaaaagagaggaggaactcttctacgctttctgaggccactgtttgtatgctcatggaccgttttgttccttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

24.87

Weight (kDa)

7.09

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15960
fragaria_vesca	FvH4_2g07390
prunus_persica	Prupe.8G110900_v2.0.a1 Prupe.8G111400_v2.0.a1 Prupe.8G111600_v2.0.a1 Prupe.8G111800_v2.0.a1 Prupe.8G112000_v2.0.a1 Prupe.8G112200_v2.0.a1
pyrus_communis	pycom10g06800 pycom15g38220
rosa_chinensis	RchiOBHm_Chr5g0033931 RchiOBHm_Chr6g0260831
rosa_laevigata	RLG00000014482
rosa_multiflora	Rmu_sc0007732.1_g000002 Rmu_sc0014629.1_g000002 Rmu_sc0029234.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207410
rosa_rugosa	Rorug02G0325000 Rorug05G0593100
rosa_samantha	Rh6AG112400 Rh6BG106300 Rh6CG103200 Rh6DG094400
rosa_wichuraiana	Rw6G009540 Rw6G009570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	287, 463, 569
AclWI	GGATC	2 cut(s)	157, 170
AcoI	YGGCCR	5 cut(s)	143, 167, 191, 225, 288
AcsI	RAATTY	2 cut(s)	134, 258
AcuI	CTGAAG	2 cut(s)	458, 519
AcvI	CACGTG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	25
AluBI	AGCT	6 cut(s)	64, 427, 436, 542, 548, 557
AluI	AGCT	6 cut(s)	64, 427, 436, 542, 548, 557
Alw26I	GTCTC	4 cut(s)	72, 75, 332, 572
AlwI	GGATC	2 cut(s)	157, 170
AoxI	GGCC	7 cut(s)	143, 167, 191, 225, 288, 453, 624
ApeKI	GCWGC	3 cut(s)	548, 551, 554
ApoI	RAATTY	2 cut(s)	134, 258
AspS9I	GGNCC	2 cut(s)	453, 646
AvaII	GGWCC	1 cut(s)	646
BamHI	GGATCC	1 cut(s)	162
BauI	CACGAG	1 cut(s)	65
BbrPI	CACGTG	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	535, 538, 566
BccI	CCATC	1 cut(s)	568
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BclI	TGATCA	3 cut(s)	177, 274, 523
BcoDI	GTCTC	4 cut(s)	72, 75, 332, 572
BfmI	CTRYAG	3 cut(s)	393, 543, 552
BisI	GCNGC	4 cut(s)	288, 549, 552, 555
BlsI	GCNGC	4 cut(s)	289, 550, 553, 556
Bme18I	GGWCC	1 cut(s)	646
BmgT120I	GGNCC	2 cut(s)	453, 646
BmiI	GGNNCC	2 cut(s)	164, 454
BmsI	GCATC	1 cut(s)	28
BoxI	GACNNNNGTC	2 cut(s)	84, 125
BsaAI	YACGTR	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	82, 659
BsaWI	WCCGGW	3 cut(s)	117, 124, 159
Bse118I	RCCGGY	3 cut(s)	193, 227, 290
Bse1I	ACTGG	2 cut(s)	205, 239
BseDI	CCNNGG	2 cut(s)	82, 659
BseGI	GGATG	2 cut(s)	364, 415
BseMII	CTCAG	2 cut(s)	86, 612
BseNI	ACTGG	2 cut(s)	205, 239
BseRI	GAGGAG	2 cut(s)	519, 613
BseX3I	CGGCCG	1 cut(s)	288
BseXI	GCAGC	3 cut(s)	535, 538, 566
BseYI	CCCAGC	1 cut(s)	427
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	7 cut(s)	145, 169, 193, 227, 290, 455, 626
BsiEI	CGRYCG	1 cut(s)	291
BsiSI	CCGG	9 cut(s)	118, 125, 146, 160, 166, 194, 228, 284, 291
BsmAI	GTCTC	4 cut(s)	72, 75, 332, 572
BsnI	GGCC	7 cut(s)	145, 169, 193, 227, 290, 455, 626
Bso31I	GGTCTC	1 cut(s)	72
Bsp143I	GATC	5 cut(s)	150, 162, 177, 274, 523
Bsp19I	CCATGG	1 cut(s)	82
BspACI	CCGC	3 cut(s)	287, 463, 569
BspANI	GGCC	7 cut(s)	145, 169, 193, 227, 290, 455, 626
BspCNI	CTCAG	2 cut(s)	85, 613
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	2 cut(s)	164, 454
BspMAI	CTGCAG	1 cut(s)	556
BspPI	GGATC	2 cut(s)	157, 170
BspQI	GCTCTTC	1 cut(s)	394
BspTNI	GGTCTC	1 cut(s)	72
BsrFI	RCCGGY	3 cut(s)	193, 227, 290
BsrI	ACTGG	2 cut(s)	205, 239
BssAI	RCCGGY	3 cut(s)	193, 227, 290
BssECI	CCNNGG	2 cut(s)	82, 659
BssMI	GATC	5 cut(s)	150, 162, 177, 274, 523
BssSI	CACGAG	1 cut(s)	65
BssT1I	CCWWGG	2 cut(s)	82, 659
Bst2BI	CACGAG	1 cut(s)	65
Bst4CI	ACNGT	3 cut(s)	586, 631, 650
Bst6I	CTCTTC	2 cut(s)	394, 613
BstBAI	YACGTR	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	100, 425
BstDEI	CTNAG	2 cut(s)	72, 621
BstDSI	CCRYGG	1 cut(s)	82
BstEII	GGTNACC	3 cut(s)	127, 155, 251
BstF5I	GGATG	2 cut(s)	364, 415
BstKTI	GATC	5 cut(s)	153, 165, 180, 277, 526
BstMAI	GTCTC	4 cut(s)	72, 75, 332, 572
BstMBI	GATC	5 cut(s)	150, 162, 177, 274, 523
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	3 cut(s)	433, 548, 554
BstNSI	RCATGY	1 cut(s)	497
BstPAI	GACNNNNGTC	2 cut(s)	84, 125
BstPI	GGTNACC	3 cut(s)	127, 155, 251
BstSFI	CTRYAG	3 cut(s)	393, 543, 552
BstV1I	GCAGC	3 cut(s)	535, 538, 566
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BstZI	CGGCCG	1 cut(s)	288
BsuRI	GGCC	7 cut(s)	145, 169, 193, 227, 290, 455, 626
BtgI	CCRYGG	1 cut(s)	82
BtsCI	GGATG	2 cut(s)	364, 415
BtsIMutI	CAGTG	1 cut(s)	627
Cac8I	GCNNGC	2 cut(s)	100, 425
CciI	TCATGA	1 cut(s)	559
Cfr10I	RCCGGY	3 cut(s)	193, 227, 290
Cfr13I	GGNCC	2 cut(s)	453, 646
Csp6I	GTAC	1 cut(s)	24
CviAII	CATG	4 cut(s)	83, 494, 560, 643
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	2 cut(s)	72, 621
DpnI	GATC	5 cut(s)	152, 164, 179, 276, 525
DpnII	GATC	5 cut(s)	150, 162, 177, 274, 523
EaeI	YGGCCR	5 cut(s)	143, 167, 191, 225, 288
EagI	CGGCCG	1 cut(s)	288
Eam1104I	CTCTTC	2 cut(s)	394, 613
EarI	CTCTTC	2 cut(s)	394, 613
EclXI	CGGCCG	1 cut(s)	288
Eco130I	CCWWGG	2 cut(s)	82, 659
Eco31I	GGTCTC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	646
Eco52I	CGGCCG	1 cut(s)	288
Eco57I	CTGAAG	2 cut(s)	458, 519
Eco72I	CACGTG	1 cut(s)	141
Eco91I	GGTNACC	3 cut(s)	127, 155, 251
EcoO65I	GGTNACC	3 cut(s)	127, 155, 251
EcoRI	GAATTC	1 cut(s)	134
EcoT14I	CCWWGG	2 cut(s)	82, 659
ErhI	CCWWGG	2 cut(s)	82, 659
FaeI	CATG	4 cut(s)	86, 497, 563, 646
FaiI	YATR	8 cut(s)	10, 84, 369, 415, 495, 561, 638, 644
FatI	CATG	4 cut(s)	82, 493, 559, 642
FbaI	TGATCA	3 cut(s)	177, 274, 523
Fnu4HI	GCNGC	4 cut(s)	288, 549, 552, 555
FokI	GGATG	2 cut(s)	371, 422
Fsp4HI	GCNGC	4 cut(s)	288, 549, 552, 555
GluI	GCNGC	4 cut(s)	288, 549, 552, 555
GsaI	CCCAGC	1 cut(s)	431
HaeIII	GGCC	7 cut(s)	145, 169, 193, 227, 290, 455, 626
HapII	CCGG	9 cut(s)	118, 125, 146, 160, 166, 194, 228, 284, 291
Hin1II	CATG	4 cut(s)	86, 497, 563, 646
HinfI	GANTC	6 cut(s)	121, 204, 238, 301, 322, 340
HpaII	CCGG	9 cut(s)	118, 125, 146, 160, 166, 194, 228, 284, 291
Hpy188I	TCNGA	3 cut(s)	75, 182, 622
Hpy188III	TCNNGA	2 cut(s)	356, 560
Hpy99I	CGWCG	1 cut(s)	481
HpyAV	CCTTC	5 cut(s)	433, 439, 478, 494, 557
HpyCH4III	ACNGT	3 cut(s)	586, 631, 650
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	5 cut(s)	19, 42, 59, 98, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	433, 548, 554
HpyF3I	CTNAG	2 cut(s)	72, 621
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	4 cut(s)	86, 497, 563, 646
Ksp22I	TGATCA	3 cut(s)	177, 274, 523
Kzo9I	GATC	5 cut(s)	150, 162, 177, 274, 523
LguI	GCTCTTC	1 cut(s)	394
Lsp1109I	GCAGC	3 cut(s)	535, 538, 566
LweI	GCATC	1 cut(s)	28
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	5 cut(s)	127, 155, 196, 230, 251
MalI	GATC	5 cut(s)	152, 164, 179, 276, 525
MboI	GATC	5 cut(s)	150, 162, 177, 274, 523
MboII	GAAGA	3 cut(s)	381, 493, 600
MfeI	CAATTG	2 cut(s)	212, 246
MflI	RGATCY	1 cut(s)	162
MluCI	AATT	5 cut(s)	134, 212, 246, 258, 376
MlyI	GAGTC	2 cut(s)	115, 334
MnlI	CCTC	7 cut(s)	364, 497, 505, 511, 591, 594, 616
MslI	CAYNNNNRTG	1 cut(s)	564
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	9 cut(s)	118, 125, 146, 160, 166, 194, 228, 284, 291
MunI	CAATTG	2 cut(s)	212, 246
MwoI	GCNNNNNNNGC	3 cut(s)	433, 548, 554
NcoI	CCATGG	1 cut(s)	82
NdeII	GATC	5 cut(s)	150, 162, 177, 274, 523
NlaIII	CATG	4 cut(s)	86, 497, 563, 646
NlaIV	GGNNCC	2 cut(s)	164, 454
NmuCI	GTSAC	5 cut(s)	127, 155, 196, 230, 251
NspI	RCATGY	1 cut(s)	497
PagI	TCATGA	1 cut(s)	559
PciSI	GCTCTTC	1 cut(s)	394
PfeI	GAWTC	4 cut(s)	204, 238, 301, 322
PkrI	GCNGC	4 cut(s)	289, 550, 553, 556
PleI	GAGTC	2 cut(s)	115, 334
PmaCI	CACGTG	1 cut(s)	141
PmlI	CACGTG	1 cut(s)	141
PpsI	GAGTC	2 cut(s)	115, 334
Ppu21I	YACGTR	1 cut(s)	141
PshAI	GACNNNNGTC	2 cut(s)	84, 125
PspCI	CACGTG	1 cut(s)	141
PspEI	GGTNACC	3 cut(s)	127, 155, 251
PspFI	CCCAGC	1 cut(s)	427
PspN4I	GGNNCC	2 cut(s)	164, 454
PspPI	GGNCC	2 cut(s)	453, 646
PstI	CTGCAG	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	564
SapI	GCTCTTC	1 cut(s)	394
SatI	GCNGC	4 cut(s)	288, 549, 552, 555
Sau3AI	GATC	5 cut(s)	150, 162, 177, 274, 523
Sau96I	GGNCC	2 cut(s)	453, 646
SchI	GAGTC	2 cut(s)	115, 334
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	3 cut(s)	393, 543, 552
SinI	GGWCC	1 cut(s)	646
SmiMI	CAYNNNNRTG	1 cut(s)	564
Sse9I	AATT	5 cut(s)	134, 212, 246, 258, 376
SsiI	CCGC	3 cut(s)	287, 463, 569
StyI	CCWWGG	2 cut(s)	82, 659
TaaI	ACNGT	3 cut(s)	586, 631, 650
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	2 cut(s)	51, 479
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	5 cut(s)	134, 212, 246, 258, 376
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	4 cut(s)	204, 238, 301, 322
TscAI	CASTG	1 cut(s)	634
TseFI	GTSAC	5 cut(s)	127, 155, 196, 230, 251
TseI	GCWGC	3 cut(s)	548, 551, 554
Tsp45I	GTSAC	5 cut(s)	127, 155, 196, 230, 251
TspDTI	ATGAA	1 cut(s)	576
TspRI	CASTG	1 cut(s)	634
VpaK11BI	GGWCC	1 cut(s)	646
XapI	RAATTY	2 cut(s)	134, 258
XceI	RCATGY	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.