Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007455

Physical Location & Seq

Genomic Coordinates Reverse (-)

79095271 .. 79096002

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0593100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTGCACACAGATGCTAGATTCGTGGTCGGTGTGGTTGGGAACGTCATTTCTGGCGGCCTTTTCCTCTCTCCAATTCCTACGTTCACACAAATATGGAGAAAAAAAGATGTGGAAGCTTTCGATCCAAAACCTTACCTTACAACAGTGTTGAACTGTTTGTTCTGGTGTTACTACGGATTGCCATTCGTGAATCCAAACAGCATTTTAGTTGTCACTATTAATGGAATTGGGCTATTTATAGAGCTCATGTATCTTACCATATTCTTCTATTATGCCGCAGCAAAAGGACGAAAGAGGGTTGCTATATACTTTATATGTGAACTTATTTTATTTGGGGCTTTGGTGGCTGCAACTATGTTGGCAATACCTGAGCATAAGATGGCAATAAATCGACGTTTGAGGGCTGTCGTAGTTGGTGTGATCTGTGATTTTTTCAATGTTCTCATGTATGGCTCTCCCTTATTCAACCTGAAAGATGTCATTAAAACTAAGAGTGTGAAATATATGCCATTCACTCTCCTAGTGGCGAACTTCCTGAATGGTTGTTGCTGGACATCCTATGCTCTTATTGGAAAAGTGGACTACTTCATTTTAATTAGCAACGGACTCGGTGCAATTTTTGGAGCAGTTCAATTGATGGTTTATGCAAGATACTACAAAACTACACCAAAAGATGAAGACCTCTCTAGCAAGACTACTAATGAAGTGCAACTTTGTACTAACGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

27.31

Weight (kDa)

9.1

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	9 - 96	1.4e-21	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	138 - 222	5.8e-22	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15960
fragaria_vesca	FvH4_2g07390
prunus_persica	Prupe.8G110900_v2.0.a1 Prupe.8G111400_v2.0.a1 Prupe.8G111600_v2.0.a1 Prupe.8G111800_v2.0.a1 Prupe.8G112000_v2.0.a1 Prupe.8G112200_v2.0.a1
pyrus_communis	pycom10g06800 pycom15g38220
rosa_chinensis	RchiOBHm_Chr5g0033931 RchiOBHm_Chr6g0260831
rosa_laevigata	RLG00000014482
rosa_multiflora	Rmu_sc0007732.1_g000002 Rmu_sc0014629.1_g000002 Rmu_sc0029234.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207410
rosa_rugosa	Rorug02G0325000 Rorug05G0593100
rosa_samantha	Rh6AG112400 Rh6BG106300 Rh6CG103200 Rh6DG094400
rosa_wichuraiana	Rw6G009540 Rw6G009570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	57, 279
AclWI	GGATC	1 cut(s)	119
AfaI	GTAC	1 cut(s)	721
AgsI	TTSAA	4 cut(s)	154, 439, 469, 635
AluBI	AGCT	2 cut(s)	119, 247
AluI	AGCT	2 cut(s)	119, 247
Alw21I	GWGCWC	2 cut(s)	9, 249
Alw44I	GTGCAC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	58
ApaLI	GTGCAC	1 cut(s)	5
ApeKI	GCWGC	2 cut(s)	281, 350
AseI	ATTAAT	1 cut(s)	222
BaeGI	GKGCMC	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	2 cut(s)	9, 249
BbvI	GCAGC	2 cut(s)	293, 337
BccI	CCATC	2 cut(s)	376, 634
BcgI	CGANNNNNNTGC	2 cut(s)	592, 626
BfaI	CTAG	3 cut(s)	18, 524, 690
BisI	GCNGC	4 cut(s)	58, 279, 282, 351
BlsI	GCNGC	4 cut(s)	59, 280, 283, 352
BmsI	GCATC	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	687
Bpu10I	CCTNAGC	1 cut(s)	372
BseGI	GGATG	1 cut(s)	557
BseMII	CTCAG	1 cut(s)	363
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	2 cut(s)	293, 337
BshFI	GGCC	1 cut(s)	60
BsiHKAI	GWGCWC	2 cut(s)	9, 249
BsnI	GGCC	1 cut(s)	60
Bsp1286I	GDGCHC	2 cut(s)	9, 249
Bsp143I	GATC	2 cut(s)	124, 423
BspACI	CCGC	2 cut(s)	57, 279
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	364
BspPI	GGATC	1 cut(s)	119
BssMI	GATC	2 cut(s)	124, 423
Bst4CI	ACNGT	2 cut(s)	148, 158
BstDEI	CTNAG	2 cut(s)	372, 492
BstF5I	GGATG	1 cut(s)	557
BstKTI	GATC	2 cut(s)	127, 426
BstMBI	GATC	2 cut(s)	124, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	293, 337
BstV2I	GAAGAC	1 cut(s)	687
BsuRI	GGCC	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	557
BtsIMutI	CAGTG	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	720
CviAII	CATG	2 cut(s)	250, 448
CviJI	RGCY	8 cut(s)	60, 119, 235, 247, 341, 350, 407, 456
CviKI_1	RGCY	8 cut(s)	60, 119, 235, 247, 341, 350, 407, 456
CviQI	GTAC	1 cut(s)	720
DdeI	CTNAG	2 cut(s)	372, 492
DpnI	GATC	2 cut(s)	126, 425
DpnII	GATC	2 cut(s)	124, 423
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	2 cut(s)	253, 451
FalI	AAGNNNNNCTT	2 cut(s)	699, 731
FatI	CATG	2 cut(s)	249, 447
Fnu4HI	GCNGC	4 cut(s)	58, 279, 282, 351
FokI	GGATG	1 cut(s)	544
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	4 cut(s)	58, 279, 282, 351
FspBI	CTAG	3 cut(s)	18, 524, 690
GluI	GCNGC	4 cut(s)	58, 279, 282, 351
HaeIII	GGCC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	253, 451
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	3 cut(s)	21, 193, 609
Hpy166II	GTNNAC	4 cut(s)	7, 87, 323, 583
Hpy188III	TCNNGA	2 cut(s)	190, 538
Hpy8I	GTNNAC	4 cut(s)	7, 87, 323, 583
Hpy99I	CGWCG	1 cut(s)	399
HpyCH4III	ACNGT	2 cut(s)	148, 158
HpyCH4IV	ACGT	4 cut(s)	45, 83, 397, 726
HpyCH4V	TGCA	5 cut(s)	7, 353, 617, 650, 712
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	2 cut(s)	372, 492
HpySE526I	ACGT	4 cut(s)	45, 83, 397, 726
Hsp92II	CATG	2 cut(s)	253, 451
Kzo9I	GATC	2 cut(s)	124, 423
LmnI	GCTCC	1 cut(s)	626
LpnPI	CCDG	6 cut(s)	39, 151, 384, 485, 538, 551
Lsp1109I	GCAGC	2 cut(s)	293, 337
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	3 cut(s)	18, 524, 690
MaeII	ACGT	4 cut(s)	45, 83, 397, 726
MaeIII	GTNAC	2 cut(s)	170, 214
MalI	GATC	2 cut(s)	126, 425
MboI	GATC	2 cut(s)	124, 423
MboII	GAAGA	2 cut(s)	259, 692
MfeI	CAATTG	1 cut(s)	635
MhlI	GDGCHC	2 cut(s)	9, 249
MluCI	AATT	5 cut(s)	75, 228, 597, 618, 635
MlyI	GAGTC	1 cut(s)	603
MnlI	CCTC	4 cut(s)	77, 291, 396, 695
MseI	TTAA	3 cut(s)	222, 486, 596
MslI	CAYNNNNRTG	2 cut(s)	12, 94
MunI	CAATTG	1 cut(s)	635
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	2 cut(s)	124, 423
NlaIII	CATG	2 cut(s)	253, 451
NmuCI	GTSAC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	21, 193
PkrI	GCNGC	4 cut(s)	59, 280, 283, 352
PleI	GAGTC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	603
PshBI	ATTAAT	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	249
RsaI	GTAC	1 cut(s)	721
RsaNI	GTAC	1 cut(s)	720
RseI	CAYNNNNRTG	2 cut(s)	12, 94
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	3 cut(s)	222, 486, 596
SatI	GCNGC	4 cut(s)	58, 279, 282, 351
Sau3AI	GATC	2 cut(s)	124, 423
SchI	GAGTC	1 cut(s)	603
SduI	GDGCHC	2 cut(s)	9, 249
SfaNI	GCATC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	12, 94
Sse9I	AATT	5 cut(s)	75, 228, 597, 618, 635
SsiI	CCGC	2 cut(s)	57, 279
SspMI	CTAG	3 cut(s)	18, 524, 690
SstI	GAGCTC	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	148, 158
TaiI	ACGT	4 cut(s)	48, 86, 400, 729
TaqI	TCGA	2 cut(s)	123, 394
TasI	AATT	5 cut(s)	75, 228, 597, 618, 635
TatI	WGTACW	1 cut(s)	719
TauI	GCSGC	2 cut(s)	60, 281
TfiI	GAWTC	2 cut(s)	21, 193
Tru1I	TTAA	3 cut(s)	222, 486, 596
Tru9I	TTAA	3 cut(s)	222, 486, 596
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	2 cut(s)	281, 350
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	3 cut(s)	580, 693, 720
TspGWI	ACGGA	2 cut(s)	192, 621
TspRI	CASTG	1 cut(s)	153
VneI	GTGCAC	1 cut(s)	5
VspI	ATTAAT	1 cut(s)	222
XspI	CTAG	3 cut(s)	18, 524, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.