Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007455

Physical Location & Seq

Genomic Coordinates Forward (+)

16830194 .. 16830707

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG112400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCTGCAGTGGTGGATGTATGGGTGAGCGAGCTGGGGAAGCTGAAGGAGAAGGTTGGGGCCAAGAAGCGGTTTCTGTGGTCGTCGAAGAAGGTGAAACATGCTGAAGGAGGAGATGAGAGTGAGGTTGATCAGCAACAACAACCAGCTGTAGCTGCTGCAGCTCATGAAAGTGCGGTGATGGAGACTACGGTTAGAAAAGAGAGGAGGAACTCTTCTACGCTTTCTGAGGCCACTTCGAATTGTTTTAGTAGTATCAAAATAAAGTTCGGTGAATTGGATAGATGCACAAAATTCATCGTGGCCACACCTGCAAACTTTTGTCCACGTCATAAAACGTATCCTCACCTCGACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.24

Weight (kDa)

9.05

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15960
fragaria_vesca	FvH4_2g07390
prunus_persica	Prupe.8G110900_v2.0.a1 Prupe.8G111400_v2.0.a1 Prupe.8G111600_v2.0.a1 Prupe.8G111800_v2.0.a1 Prupe.8G112000_v2.0.a1 Prupe.8G112200_v2.0.a1
pyrus_communis	pycom10g06800 pycom15g38220
rosa_chinensis	RchiOBHm_Chr5g0033931 RchiOBHm_Chr6g0260831
rosa_laevigata	RLG00000014482
rosa_multiflora	Rmu_sc0007732.1_g000002 Rmu_sc0014629.1_g000002 Rmu_sc0029234.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207410
rosa_rugosa	Rorug02G0325000 Rorug05G0593100
rosa_samantha	Rh6AG112400 Rh6BG106300 Rh6CG103200 Rh6DG094400
rosa_wichuraiana	Rw6G009540 Rw6G009570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	319
Acc36I	ACCTGC	1 cut(s)	319
AciI	CCGC	2 cut(s)	70, 176
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	2 cut(s)	65, 126
AfiI	CCNNNNNNNGG	1 cut(s)	69
AjiI	CACGTC	1 cut(s)	329
AluBI	AGCT	5 cut(s)	34, 43, 149, 155, 164
AluI	AGCT	5 cut(s)	34, 43, 149, 155, 164
Alw26I	GTCTC	1 cut(s)	179
AoxI	GGCC	3 cut(s)	60, 231, 303
ApeKI	GCWGC	3 cut(s)	155, 158, 161
ApoI	RAATTY	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	5 cut(s)	37, 106, 190, 284, 338
AsuII	TTCGAA	1 cut(s)	239
BalI	TGGCCA	1 cut(s)	305
BbvI	GCAGC	3 cut(s)	142, 145, 173
BccI	CCATC	1 cut(s)	175
BciVI	GTATCC	1 cut(s)	351
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	358
BfmI	CTRYAG	3 cut(s)	6, 150, 159
BfuAI	ACCTGC	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	3 cut(s)	156, 159, 162
BlsI	GCNGC	3 cut(s)	157, 160, 163
BmgBI	CACGTC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	61
BmsI	GCATC	1 cut(s)	275
Bpu14I	TTCGAA	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	219
BseRI	GAGGAG	2 cut(s)	126, 220
BseXI	GCAGC	3 cut(s)	142, 145, 173
BseYI	CCCAGC	1 cut(s)	34
BshFI	GGCC	3 cut(s)	62, 233, 305
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	179
BsnI	GGCC	3 cut(s)	62, 233, 305
Bsp119I	TTCGAA	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	2 cut(s)	70, 176
BspANI	GGCC	3 cut(s)	62, 233, 305
BspCNI	CTCAG	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	61
BspMAI	CTGCAG	2 cut(s)	10, 163
BspMI	ACCTGC	1 cut(s)	319
BspT104I	TTCGAA	1 cut(s)	239
BssMI	GATC	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	220
BstBI	TTCGAA	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 155, 161, 311
BstNSI	RCATGY	1 cut(s)	104
BstSFI	CTRYAG	3 cut(s)	6, 150, 159
BstV1I	GCAGC	3 cut(s)	142, 145, 173
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	3 cut(s)	62, 233, 305
BtrI	CACGTC	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	15
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	32
CciI	TCATGA	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	60
CviAII	CATG	2 cut(s)	101, 167
CviJI	RGCY	8 cut(s)	34, 43, 62, 149, 155, 164, 233, 305
CviKI_1	RGCY	8 cut(s)	34, 43, 62, 149, 155, 164, 233, 305
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Eco57I	CTGAAG	2 cut(s)	65, 126
FaeI	CATG	2 cut(s)	104, 170
FaiI	YATR	4 cut(s)	22, 102, 168, 333
FatI	CATG	2 cut(s)	100, 166
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	3 cut(s)	156, 159, 162
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	3 cut(s)	156, 159, 162
FspBI	CTAG	1 cut(s)	358
GluI	GCNGC	3 cut(s)	156, 159, 162
GsaI	CCCAGC	1 cut(s)	38
HaeIII	GGCC	3 cut(s)	62, 233, 305
Hin1II	CATG	2 cut(s)	104, 170
HphI	GGTGA	5 cut(s)	37, 106, 190, 284, 338
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	326
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	4 cut(s)	40, 46, 85, 101
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	2 cut(s)	328, 338
HpyCH4V	TGCA	4 cut(s)	8, 161, 288, 314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 155, 161, 311
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	2 cut(s)	328, 338
Hsp92II	CATG	2 cut(s)	104, 170
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	3 cut(s)	20, 159, 324
Lsp1109I	GCAGC	3 cut(s)	142, 145, 173
LweI	GCATC	1 cut(s)	275
MaeI	CTAG	1 cut(s)	358
MaeII	ACGT	2 cut(s)	328, 338
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	100, 207
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	3 cut(s)	241, 275, 293
MluNI	TGGCCA	1 cut(s)	305
MnlI	CCTC	7 cut(s)	104, 118, 198, 201, 223, 354, 359
Mox20I	TGGCCA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	149
MwoI	GCNNNNNNNGC	4 cut(s)	40, 155, 161, 311
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	104, 170
NlaIV	GGNNCC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	104
NspV	TTCGAA	1 cut(s)	239
PagI	TCATGA	1 cut(s)	166
PaqCI	CACCTGC	1 cut(s)	319
PkrI	GCNGC	3 cut(s)	157, 160, 163
PspFI	CCCAGC	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	60
PstI	CTGCAG	2 cut(s)	10, 163
PvuII	CAGCTG	1 cut(s)	149
RseI	CAYNNNNRTG	1 cut(s)	171
SatI	GCNGC	3 cut(s)	156, 159, 162
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	60
SfaNI	GCATC	1 cut(s)	275
SfcI	CTRYAG	3 cut(s)	6, 150, 159
SfuI	TTCGAA	1 cut(s)	239
SgeI	CNNG	9 cut(s)	43, 47, 76, 113, 158, 179, 313, 323, 339
SmiMI	CAYNNNNRTG	1 cut(s)	171
Sse9I	AATT	3 cut(s)	241, 275, 293
SsiI	CCGC	2 cut(s)	70, 176
SspMI	CTAG	1 cut(s)	358
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	2 cut(s)	331, 341
TaqI	TCGA	3 cut(s)	86, 239, 351
TasI	AATT	3 cut(s)	241, 275, 293
TscAI	CASTG	1 cut(s)	15
TseI	GCWGC	3 cut(s)	155, 158, 161
TspDTI	ATGAA	2 cut(s)	183, 286
TspRI	CASTG	1 cut(s)	15
XapI	RAATTY	1 cut(s)	293
XceI	RCATGY	1 cut(s)	104
XspI	CTAG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.