Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007455

Physical Location & Seq

Genomic Coordinates Reverse (-)

27809197 .. 27809415

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31297

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAACCCTCTTAACTGGCTCGCCCATCCCTCGCTGATCACATGCACCAACTCCAAATCAATCTTGGTCAGGCTCACCTTTGGCAGCGACTCGGCCTCTAGAACTTTAGTCCCACGGTCGCTTTCCAGCACCACGAGATCAACAATTAGGGCACGGGGCACGGGGCAGTGGGCAGTGCGCATGGGGGCACGGGTAGTGGGCAGGCCAAGGGGGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

72

Amino Acids

7.87

Weight (kDa)

12.0

Isoelectric Point (pI)

31.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15960
fragaria_vesca	FvH4_2g07390
prunus_persica	Prupe.8G110900_v2.0.a1 Prupe.8G111400_v2.0.a1 Prupe.8G111600_v2.0.a1 Prupe.8G111800_v2.0.a1 Prupe.8G112000_v2.0.a1 Prupe.8G112200_v2.0.a1
pyrus_communis	pycom10g06800 pycom15g38220
rosa_chinensis	RchiOBHm_Chr5g0033931 RchiOBHm_Chr6g0260831
rosa_laevigata	RLG00000014482
rosa_multiflora	Rmu_sc0007732.1_g000002 Rmu_sc0014629.1_g000002 Rmu_sc0029234.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207410
rosa_rugosa	Rorug02G0325000 Rorug05G0593100
rosa_samantha	Rh6AG112400 Rh6BG106300 Rh6CG103200 Rh6DG094400
rosa_wichuraiana	Rw6G009540 Rw6G009570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	179
AoxI	GGCC	2 cut(s)	93, 203
ApeKI	GCWGC	1 cut(s)	84
AspLEI	GCGC	2 cut(s)	180, 216
AsuHPI	GGTGA	1 cut(s)	67
BaeGI	GKGCMC	3 cut(s)	154, 161, 190
BauI	CACGAG	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	1 cut(s)	33
BclI	TGATCA	1 cut(s)	36
BfaI	CTAG	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	217
BglI	GCCNNNNNGGC	1 cut(s)	211
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	113, 206
Bse1I	ACTGG	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	113, 206
BseGI	GGATG	1 cut(s)	25
BseNI	ACTGG	1 cut(s)	20
BseSI	GKGCMC	3 cut(s)	154, 161, 190
BseXI	GCAGC	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	95, 205
BsiEI	CGRYCG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	95, 205
Bsp1286I	GDGCHC	3 cut(s)	154, 161, 190
Bsp143I	GATC	2 cut(s)	36, 137
BspANI	GGCC	2 cut(s)	95, 205
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	113, 206
BssMI	GATC	2 cut(s)	36, 137
BssSI	CACGAG	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	21, 203
BstDSI	CCRYGG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	25
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	2 cut(s)	180, 216
BstKTI	GATC	2 cut(s)	39, 140
BstMBI	GATC	2 cut(s)	36, 137
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNSI	RCATGY	1 cut(s)	45
BstSLI	GKGCMC	3 cut(s)	154, 161, 190
BstV1I	GCAGC	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	95, 205
BtgI	CCRYGG	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	25
BtsI	GCAGTG	2 cut(s)	173, 180
BtsIMutI	CAGTG	2 cut(s)	173, 180
Cac8I	GCNNGC	2 cut(s)	21, 203
CfoI	GCGC	2 cut(s)	180, 216
CviAII	CATG	2 cut(s)	42, 181
CviJI	RGCY	4 cut(s)	19, 73, 95, 205
CviKI_1	RGCY	4 cut(s)	19, 73, 95, 205
DpnI	GATC	2 cut(s)	38, 139
DpnII	GATC	2 cut(s)	36, 137
Eco130I	CCWWGG	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	2 cut(s)	45, 184
FaiI	YATR	2 cut(s)	43, 182
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	2 cut(s)	41, 180
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	85
FspAI	RTGCGCAY	1 cut(s)	179
FspBI	CTAG	1 cut(s)	99
FspI	TGCGCA	1 cut(s)	179
GlaI	GCGC	2 cut(s)	179, 215
GluI	GCNGC	1 cut(s)	85
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	2 cut(s)	95, 205
HhaI	GCGC	2 cut(s)	180, 216
Hin1II	CATG	2 cut(s)	45, 184
Hin6I	GCGC	2 cut(s)	178, 214
HinP1I	GCGC	2 cut(s)	178, 214
HinfI	GANTC	1 cut(s)	89
HphI	GGTGA	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	99
HpyCH4III	ACNGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
Hsp92II	CATG	2 cut(s)	45, 184
HspAI	GCGC	2 cut(s)	178, 214
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	36, 137
LpnPI	CCDG	3 cut(s)	55, 139, 187
Lsp1109I	GCAGC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	99
MalI	GATC	2 cut(s)	38, 139
MboI	GATC	2 cut(s)	36, 137
MhlI	GDGCHC	3 cut(s)	154, 161, 190
MluCI	AATT	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	3 cut(s)	18, 40, 106
MseI	TTAA	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	211
NdeII	GATC	2 cut(s)	36, 137
NlaIII	CATG	2 cut(s)	45, 184
NmeAIII	GCCGAG	1 cut(s)	71
NsbI	TGCGCA	1 cut(s)	179
NspI	RCATGY	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	86
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	2 cut(s)	36, 137
SchI	GAGTC	1 cut(s)	83
SduI	GDGCHC	3 cut(s)	154, 161, 190
SetI	ASST	1 cut(s)	80
Sse9I	AATT	1 cut(s)	144
SspMI	CTAG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	117
TasI	AATT	1 cut(s)	144
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	2 cut(s)	173, 180
TseI	GCWGC	1 cut(s)	84
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	173, 180
XbaI	TCTAGA	1 cut(s)	98
XceI	RCATGY	1 cut(s)	45
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.