Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007455

Physical Location & Seq

Genomic Coordinates Forward (+)

57288486 .. 57288749

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00207410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGTCTGCAGTGGTGGAGGTATGGGTGAGCGAGCTGGGGAAGCTGAAGGAGAAGGTTGGGGCCAAGAAGCGGTTTCTGTGGTCGTCGAAGAAGGTGAAACATGCTGAAGGAGGAGATGAGGGTAAGGTTGATCAGCAACAACAACCAGCTGTAGCTCATGAAGGTGCGGAGATGGAGACTACGGTTAGAAAAGAGAGGAGGAACTCTTCTACGCTTTCTGAGGCCACTGTTTGTATGCTCATGGACCGTTTTGTTCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

9.8

Weight (kDa)

8.82

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15960
fragaria_vesca	FvH4_2g07390
prunus_persica	Prupe.8G110900_v2.0.a1 Prupe.8G111400_v2.0.a1 Prupe.8G111600_v2.0.a1 Prupe.8G111800_v2.0.a1 Prupe.8G112000_v2.0.a1 Prupe.8G112200_v2.0.a1
pyrus_communis	pycom10g06800 pycom15g38220
rosa_chinensis	RchiOBHm_Chr5g0033931 RchiOBHm_Chr6g0260831
rosa_laevigata	RLG00000014482
rosa_multiflora	Rmu_sc0007732.1_g000002 Rmu_sc0014629.1_g000002 Rmu_sc0029234.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207410
rosa_rugosa	Rorug02G0325000 Rorug05G0593100
rosa_samantha	Rh6AG112400 Rh6BG106300 Rh6CG103200 Rh6DG094400
rosa_wichuraiana	Rw6G009540 Rw6G009570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	70, 167
AcuI	CTGAAG	2 cut(s)	65, 126
AfiI	CCNNNNNNNGG	1 cut(s)	69
AluBI	AGCT	4 cut(s)	34, 43, 149, 155
AluI	AGCT	4 cut(s)	34, 43, 149, 155
Alw26I	GTCTC	1 cut(s)	170
AoxI	GGCC	2 cut(s)	60, 222
AspS9I	GGNCC	2 cut(s)	60, 244
AsuHPI	GGTGA	2 cut(s)	37, 106
AvaII	GGWCC	1 cut(s)	244
BccI	CCATC	1 cut(s)	166
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	170
BfmI	CTRYAG	2 cut(s)	6, 150
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	2 cut(s)	60, 244
BmiI	GGNNCC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	257
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	210
BseRI	GAGGAG	2 cut(s)	126, 211
BseYI	CCCAGC	1 cut(s)	34
BshFI	GGCC	2 cut(s)	62, 224
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	62, 224
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	2 cut(s)	70, 167
BspANI	GGCC	2 cut(s)	62, 224
BspCNI	CTCAG	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	61
BspMAI	CTGCAG	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	1 cut(s)	130
BssT1I	CCWWGG	1 cut(s)	257
Bst4CI	ACNGT	3 cut(s)	184, 229, 248
Bst6I	CTCTTC	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNSI	RCATGY	1 cut(s)	104
BstSFI	CTRYAG	2 cut(s)	6, 150
BsuRI	GGCC	2 cut(s)	62, 224
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	15, 225
Cac8I	GCNNGC	1 cut(s)	32
CciI	TCATGA	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	60, 244
CviAII	CATG	3 cut(s)	101, 158, 241
CviJI	RGCY	6 cut(s)	34, 43, 62, 149, 155, 224
CviKI_1	RGCY	6 cut(s)	34, 43, 62, 149, 155, 224
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	244
Eco57I	CTGAAG	2 cut(s)	65, 126
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	3 cut(s)	104, 161, 244
FaiI	YATR	5 cut(s)	22, 102, 159, 236, 242
FatI	CATG	3 cut(s)	100, 157, 240
FbaI	TGATCA	1 cut(s)	130
GsaI	CCCAGC	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	62, 224
Hin1II	CATG	3 cut(s)	104, 161, 244
HphI	GGTGA	2 cut(s)	37, 106
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	158
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	5 cut(s)	40, 46, 85, 101, 155
HpyCH4III	ACNGT	3 cut(s)	184, 229, 248
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	104, 161, 244
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	2 cut(s)	20, 159
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	100, 198
MnlI	CCTC	6 cut(s)	10, 104, 112, 189, 192, 214
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	40
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	3 cut(s)	104, 161, 244
NlaIV	GGNNCC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	104
PagI	TCATGA	1 cut(s)	157
PspFI	CCCAGC	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	60, 244
PstI	CTGCAG	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	149
RseI	CAYNNNNRTG	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	2 cut(s)	60, 244
SetI	ASST	9 cut(s)	21, 36, 45, 57, 96, 129, 151, 157, 166
SfcI	CTRYAG	2 cut(s)	6, 150
SgeI	CNNG	7 cut(s)	43, 47, 76, 113, 158, 170, 253
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	162
SsiI	CCGC	2 cut(s)	70, 167
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	3 cut(s)	184, 229, 248
TaqI	TCGA	1 cut(s)	86
TscAI	CASTG	2 cut(s)	15, 232
TspDTI	ATGAA	1 cut(s)	174
TspRI	CASTG	2 cut(s)	15, 232
VpaK11BI	GGWCC	1 cut(s)	244
XceI	RCATGY	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.