Rw6G009570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0007455
Physical Location & Seq
Forward (+)
16055854 .. 16056126
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G009570.1

Sequence Viewer

Length: 273 bp
ATGTCTGCAGTGGTGGATGTATGGGTGAGCGAGCTGGGGAAGCTGAAGGAGAAGGTTGGGGCCAAGAAGCGGTTTCTGTGGTCGTCGAAGAAGGTGAAACATGCTGAAGGAGGAGATGAGAGTGAGGTTGATCAGCAACAACAACCAGCTGTAGCTGCTGCAGCTCATGAAAGTGCGGTGATGGAGACTACGGTTAGAAAAGAGAGGAGGAACTCTTCTACGCTTTCTGAGGCCACTGTTTGTATGCTCATGGACCGTTTTGTTCCTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.03

Weight (kDa)

7.89

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 70, 176
AcuI CTGAAG 2 cut(s) 65, 126
AfiI CCNNNNNNNGG 1 cut(s) 69
AluBI AGCT 5 cut(s) 34, 43, 149, 155, 164
AluI AGCT 5 cut(s) 34, 43, 149, 155, 164
Alw26I GTCTC 1 cut(s) 179
AoxI GGCC 2 cut(s) 60, 231
ApeKI GCWGC 3 cut(s) 155, 158, 161
AspS9I GGNCC 2 cut(s) 60, 253
AsuHPI GGTGA 3 cut(s) 37, 106, 190
AvaII GGWCC 1 cut(s) 253
BbvI GCAGC 3 cut(s) 142, 145, 173
BccI CCATC 1 cut(s) 175
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 179
BfmI CTRYAG 3 cut(s) 6, 150, 159
BisI GCNGC 3 cut(s) 156, 159, 162
BlsI GCNGC 3 cut(s) 157, 160, 163
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 2 cut(s) 60, 253
BmiI GGNNCC 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 266
Bsc4I CCNNNNNNNGG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 219
BseRI GAGGAG 2 cut(s) 126, 220
BseXI GCAGC 3 cut(s) 142, 145, 173
BseYI CCCAGC 1 cut(s) 34
BshFI GGCC 2 cut(s) 62, 233
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 179
BsnI GGCC 2 cut(s) 62, 233
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 2 cut(s) 70, 176
BspANI GGCC 2 cut(s) 62, 233
BspCNI CTCAG 1 cut(s) 220
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 61
BspMAI CTGCAG 2 cut(s) 10, 163
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 266
Bst4CI ACNGT 3 cut(s) 193, 238, 257
Bst6I CTCTTC 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 3 cut(s) 40, 155, 161
BstNSI RCATGY 1 cut(s) 104
BstSFI CTRYAG 3 cut(s) 6, 150, 159
BstV1I GCAGC 3 cut(s) 142, 145, 173
BsuRI GGCC 2 cut(s) 62, 233
BtsCI GGATG 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 15, 234
Cac8I GCNNGC 1 cut(s) 32
CciI TCATGA 1 cut(s) 166
Cfr13I GGNCC 2 cut(s) 60, 253
CviAII CATG 3 cut(s) 101, 167, 250
CviJI RGCY 7 cut(s) 34, 43, 62, 149, 155, 164, 233
CviKI_1 RGCY 7 cut(s) 34, 43, 62, 149, 155, 164, 233
DdeI CTNAG 1 cut(s) 228
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 253
Eco57I CTGAAG 2 cut(s) 65, 126
EcoT14I CCWWGG 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 3 cut(s) 104, 170, 253
FaiI YATR 5 cut(s) 22, 102, 168, 245, 251
FatI CATG 3 cut(s) 100, 166, 249
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 3 cut(s) 156, 159, 162
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 3 cut(s) 156, 159, 162
GluI GCNGC 3 cut(s) 156, 159, 162
GsaI CCCAGC 1 cut(s) 38
HaeIII GGCC 2 cut(s) 62, 233
Hin1II CATG 3 cut(s) 104, 170, 253
HphI GGTGA 3 cut(s) 37, 106, 190
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 4 cut(s) 40, 46, 85, 101
HpyCH4III ACNGT 3 cut(s) 193, 238, 257
HpyCH4V TGCA 2 cut(s) 8, 161
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 155, 161
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 3 cut(s) 104, 170, 253
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 2 cut(s) 20, 159
Lsp1109I GCAGC 3 cut(s) 142, 145, 173
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 2 cut(s) 100, 207
MnlI CCTC 5 cut(s) 104, 118, 198, 201, 223
MslI CAYNNNNRTG 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 149
MwoI GCNNNNNNNGC 3 cut(s) 40, 155, 161
NdeII GATC 1 cut(s) 130
NlaIII CATG 3 cut(s) 104, 170, 253
NlaIV GGNNCC 1 cut(s) 61
NspI RCATGY 1 cut(s) 104
PagI TCATGA 1 cut(s) 166
PkrI GCNGC 3 cut(s) 157, 160, 163
PspFI CCCAGC 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 2 cut(s) 60, 253
PstI CTGCAG 2 cut(s) 10, 163
PvuII CAGCTG 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 171
SatI GCNGC 3 cut(s) 156, 159, 162
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 2 cut(s) 60, 253
SetI ASST 8 cut(s) 36, 45, 57, 96, 129, 151, 157, 166
SfcI CTRYAG 3 cut(s) 6, 150, 159
SgeI CNNG 7 cut(s) 43, 47, 76, 113, 158, 179, 262
SinI GGWCC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 171
SsiI CCGC 2 cut(s) 70, 176
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 3 cut(s) 193, 238, 257
TaqI TCGA 1 cut(s) 86
TscAI CASTG 2 cut(s) 15, 241
TseI GCWGC 3 cut(s) 155, 158, 161
TspDTI ATGAA 1 cut(s) 183
TspRI CASTG 2 cut(s) 15, 241
VpaK11BI GGWCC 1 cut(s) 253
XceI RCATGY 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.