Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007455

Physical Location & Seq

Genomic Coordinates Reverse (-)

53804716 .. 53807020

Gene Structure 2305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014482

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTTGACTACAGATCTGTCCTTGACTCTCAACGAATTGAAGTGCAAGCTCTGCAAGTACTCGTCCTCCCTCATGAACCCTCTTAACTGGCTCGCCCATCCCTCGCTGATCACATGCACCGACTCTAGATCAATCTTGGTCAGGCTCACCTTCGGCGGCGACTCGGCCTCCAGAACCTTATGGGCAGGCCAAGGGGGCGTTGACTGGGCTATTGCAGCAACGGTGAGTGGAGGGGGGTGGGATGTTGCTATGCCCACAGGCGGCAAGGCTGGGAAGGTCAATGATATTAGCCCGAACCATATAACAGATGTGGTGGATGTATGGGTGAGTGAGCTGGGGAAGCTGAAGGAGAAGGTTGGGGCCAAGAAGCGGTTTCTGTGGTCGTCGAAGAAGGTGAAACATGCTGAAGGAGGAGATGAGGGTGAGGTTGATCAGCAACAACAACCAGCTGTAGCTGCTGCAGCTCATGAAAATGCGGTGATGGAGACTACGGTTAGAAAAGAGAGGAGGAACTCTTCTACGCTTTCTGAGGCCACTGTTTGTATGCTCATGGACCGCTTTGTTCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.6

Weight (kDa)

7.68

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15960
fragaria_vesca	FvH4_2g07390
prunus_persica	Prupe.8G110900_v2.0.a1 Prupe.8G111400_v2.0.a1 Prupe.8G111600_v2.0.a1 Prupe.8G111800_v2.0.a1 Prupe.8G112000_v2.0.a1 Prupe.8G112200_v2.0.a1
pyrus_communis	pycom10g06800 pycom15g38220
rosa_chinensis	RchiOBHm_Chr5g0033931 RchiOBHm_Chr6g0260831
rosa_laevigata	RLG00000014482
rosa_multiflora	Rmu_sc0007732.1_g000002 Rmu_sc0014629.1_g000002 Rmu_sc0029234.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207410
rosa_rugosa	Rorug02G0325000 Rorug05G0593100
rosa_samantha	Rh6AG112400 Rh6BG106300 Rh6CG103200 Rh6DG094400
rosa_wichuraiana	Rw6G009540 Rw6G009570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	156, 261, 370, 476, 556
AcuI	CTGAAG	2 cut(s)	365, 426
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	260, 369
AgsI	TTSAA	1 cut(s)	40
AluBI	AGCT	6 cut(s)	49, 334, 343, 449, 455, 464
AluI	AGCT	6 cut(s)	49, 334, 343, 449, 455, 464
Alw26I	GTCTC	1 cut(s)	479
AoxI	GGCC	4 cut(s)	165, 187, 360, 531
ApeKI	GCWGC	4 cut(s)	215, 455, 458, 461
AspS9I	GGNCC	2 cut(s)	360, 553
AsuHPI	GGTGA	6 cut(s)	139, 235, 337, 406, 434, 490
AvaII	GGWCC	1 cut(s)	553
BbvI	GCAGC	4 cut(s)	227, 442, 445, 473
BccI	CCATC	2 cut(s)	105, 475
BclI	TGATCA	2 cut(s)	108, 430
BcoDI	GTCTC	1 cut(s)	479
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	3 cut(s)	9, 450, 459
BglI	GCCNNNNNGGC	1 cut(s)	195
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	6 cut(s)	157, 216, 262, 456, 459, 462
BlsI	GCNGC	6 cut(s)	158, 217, 263, 457, 460, 463
BmcAI	AGTACT	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	553
BmgT120I	GGNCC	2 cut(s)	360, 553
BmiI	GGNNCC	1 cut(s)	361
BmrI	ACTGGG	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	214
BpmI	CTGGAG	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	190, 566
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 152, 182
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 369
Bse1I	ACTGG	2 cut(s)	92, 209
BseDI	CCNNGG	2 cut(s)	190, 566
BseGI	GGATG	3 cut(s)	97, 247, 322
BseLI	CCNNNNNNNGG	2 cut(s)	260, 369
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	2 cut(s)	92, 209
BseRI	GAGGAG	2 cut(s)	426, 520
BseXI	GCAGC	4 cut(s)	227, 442, 445, 473
BseYI	CCCAGC	2 cut(s)	269, 334
BshFI	GGCC	4 cut(s)	167, 189, 362, 533
BslI	CCNNNNNNNGG	2 cut(s)	260, 369
BsmAI	GTCTC	1 cut(s)	479
BsnI	GGCC	4 cut(s)	167, 189, 362, 533
Bsp143I	GATC	4 cut(s)	13, 108, 128, 430
BspACI	CCGC	5 cut(s)	156, 261, 370, 476, 556
BspANI	GGCC	4 cut(s)	167, 189, 362, 533
BspCNI	CTCAG	1 cut(s)	520
BspHI	TCATGA	2 cut(s)	72, 466
BspLI	GGNNCC	1 cut(s)	361
BspMAI	CTGCAG	1 cut(s)	463
BsrI	ACTGG	2 cut(s)	92, 209
BssECI	CCNNGG	2 cut(s)	190, 566
BssMI	GATC	4 cut(s)	13, 108, 128, 430
BssT1I	CCWWGG	2 cut(s)	190, 566
Bst4CI	ACNGT	3 cut(s)	223, 493, 538
Bst6I	CTCTTC	1 cut(s)	520
BstAPI	GCANNNNNTGC	1 cut(s)	51
BstC8I	GCNNGC	3 cut(s)	47, 93, 187
BstDEI	CTNAG	1 cut(s)	528
BstF5I	GGATG	3 cut(s)	97, 247, 322
BstKTI	GATC	4 cut(s)	16, 111, 131, 433
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	4 cut(s)	13, 108, 128, 430
BstMWI	GCNNNNNNNGC	6 cut(s)	51, 195, 215, 340, 455, 461
BstNSI	RCATGY	2 cut(s)	117, 404
BstSFI	CTRYAG	3 cut(s)	9, 450, 459
BstV1I	GCAGC	4 cut(s)	227, 442, 445, 473
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	4 cut(s)	167, 189, 362, 533
BtsCI	GGATG	3 cut(s)	97, 247, 322
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	3 cut(s)	47, 93, 187
CciI	TCATGA	2 cut(s)	72, 466
Cfr13I	GGNCC	2 cut(s)	360, 553
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	5 cut(s)	73, 114, 401, 467, 550
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	1 cut(s)	528
DpnI	GATC	4 cut(s)	15, 110, 130, 432
DpnII	GATC	4 cut(s)	13, 108, 128, 430
Eam1104I	CTCTTC	1 cut(s)	520
EarI	CTCTTC	1 cut(s)	520
Eco130I	CCWWGG	2 cut(s)	190, 566
Eco47I	GGWCC	1 cut(s)	553
Eco57I	CTGAAG	2 cut(s)	365, 426
EcoT14I	CCWWGG	2 cut(s)	190, 566
ErhI	CCWWGG	2 cut(s)	190, 566
FaeI	CATG	5 cut(s)	76, 117, 404, 470, 553
FatI	CATG	5 cut(s)	72, 113, 400, 466, 549
FbaI	TGATCA	2 cut(s)	108, 430
Fnu4HI	GCNGC	6 cut(s)	157, 216, 262, 456, 459, 462
FokI	GGATG	3 cut(s)	84, 254, 329
Fsp4HI	GCNGC	6 cut(s)	157, 216, 262, 456, 459, 462
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	6 cut(s)	157, 216, 262, 456, 459, 462
GsaI	CCCAGC	2 cut(s)	273, 338
GsuI	CTGGAG	1 cut(s)	154
HaeIII	GGCC	4 cut(s)	167, 189, 362, 533
Hin1II	CATG	5 cut(s)	76, 117, 404, 470, 553
HincII	GTYRAC	2 cut(s)	6, 202
HindII	GTYRAC	2 cut(s)	6, 202
HinfI	GANTC	3 cut(s)	25, 122, 161
HphI	GGTGA	6 cut(s)	139, 235, 337, 406, 434, 490
Hpy166II	GTNNAC	2 cut(s)	6, 202
Hpy188I	TCNGA	1 cut(s)	529
Hpy188III	TCNNGA	4 cut(s)	73, 126, 171, 467
Hpy8I	GTNNAC	2 cut(s)	6, 202
Hpy99I	CGWCG	1 cut(s)	388
HpyAV	CCTTC	6 cut(s)	160, 268, 340, 346, 385, 401
HpyCH4III	ACNGT	3 cut(s)	223, 493, 538
HpyCH4V	TGCA	5 cut(s)	45, 54, 117, 215, 461
HpyF10VI	GCNNNNNNNGC	6 cut(s)	51, 195, 215, 340, 455, 461
HpyF3I	CTNAG	1 cut(s)	528
Hsp92II	CATG	5 cut(s)	76, 117, 404, 470, 553
Ksp22I	TGATCA	2 cut(s)	108, 430
Kzo9I	GATC	4 cut(s)	13, 108, 128, 430
LpnPI	CCDG	9 cut(s)	73, 127, 171, 184, 190, 243, 255, 320, 459
Lsp1109I	GCAGC	4 cut(s)	227, 442, 445, 473
MaeI	CTAG	1 cut(s)	126
MalI	GATC	4 cut(s)	15, 110, 130, 432
MboI	GATC	4 cut(s)	13, 108, 128, 430
MboII	GAAGA	2 cut(s)	400, 507
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	1 cut(s)	35
MlyI	GAGTC	3 cut(s)	19, 116, 155
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	449
MwoI	GCNNNNNNNGC	6 cut(s)	51, 195, 215, 340, 455, 461
NdeII	GATC	4 cut(s)	13, 108, 128, 430
NlaIII	CATG	5 cut(s)	76, 117, 404, 470, 553
NlaIV	GGNNCC	1 cut(s)	361
NmeAIII	GCCGAG	1 cut(s)	143
NspI	RCATGY	2 cut(s)	117, 404
PagI	TCATGA	2 cut(s)	72, 466
PkrI	GCNGC	6 cut(s)	158, 217, 263, 457, 460, 463
PleI	GAGTC	3 cut(s)	19, 116, 155
PpsI	GAGTC	3 cut(s)	19, 116, 155
PspFI	CCCAGC	2 cut(s)	269, 334
PspN4I	GGNNCC	1 cut(s)	361
PspPI	GGNCC	2 cut(s)	360, 553
PstI	CTGCAG	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	6 cut(s)	157, 216, 262, 456, 459, 462
Sau3AI	GATC	4 cut(s)	13, 108, 128, 430
Sau96I	GGNCC	2 cut(s)	360, 553
ScaI	AGTACT	1 cut(s)	59
SchI	GAGTC	3 cut(s)	19, 116, 155
SfcI	CTRYAG	3 cut(s)	9, 450, 459
SinI	GGWCC	1 cut(s)	553
SmiMI	CAYNNNNRTG	1 cut(s)	471
Sse9I	AATT	1 cut(s)	35
SsiI	CCGC	5 cut(s)	156, 261, 370, 476, 556
SspMI	CTAG	1 cut(s)	126
StyI	CCWWGG	2 cut(s)	190, 566
TaaI	ACNGT	3 cut(s)	223, 493, 538
TaqI	TCGA	1 cut(s)	386
TasI	AATT	1 cut(s)	35
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	2 cut(s)	159, 264
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	541
TseI	GCWGC	4 cut(s)	215, 455, 458, 461
TspDTI	ATGAA	2 cut(s)	89, 483
TspRI	CASTG	1 cut(s)	541
VpaK11BI	GGWCC	1 cut(s)	553
XbaI	TCTAGA	1 cut(s)	125
XceI	RCATGY	2 cut(s)	117, 404
XspI	CTAG	1 cut(s)	126
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.