pycom15g38310

At5g49945-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0007803
Physical Location & Seq
Forward (+)
38131057 .. 38132643
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 582 bp
ATGCAGAAGGAGGTTAGGGACTTGCAGAAGTTTGCCGGGATATTGTCTCCGCCTACTGGAAGGAAGTGGGTTTCTGAGGACCTGGCGGTTATCTCCGAATCTAAGGAAGTGGCTGGTGATTTGATCACTGAGGCTGTGCTCGAACAGGTTTTAGGTGAAAAGGCTTTTGAGAAATTTGGAAAGGGTTTCATCTACATGCATTTTTCAGATCAACATCCAGGCGCGCAAAAGAAGATGCTGTTGTTTAAGTTTGCCCTACCGGATGCAGGTAACATGGCTGATATGACTCGTCTGGTGGCCTTGGTACCATATTATATTGATTTGATTGGGCGCTACAAGCTAAGCAGTCAGGCTCGATCCAAAACTGAAGCTATCAGATCAAAGGCGGCTCAAGAGGCTTACAAAGAACTCCAAAATGCAAGGCAAGAAGCATTGCAAAGAAAGAAGGCGGAGAGGAGAAAGATGATGGAGGAGGCCGAGGCTAAGCTCAGTGCAGAGAGTATTCGCAAGAAAGAAGCAAAGGAGCGTGCTCGTCAGATGAAGAAGGCAATGCCGAAGATAAAAATGACCCGTGGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1682

Protein Analysis

194

Amino Acids

21.96

Weight (kDa)

9.82

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC47 PF07946 1 - 182 3.5e-36 PAT complex subunit CCDC47
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 257
Acc65I GGTACC 1 cut(s) 304
AccB1I GGYRCC 1 cut(s) 304
AccII CGCG 1 cut(s) 224
AciI CCGC 4 cut(s) 50, 86, 386, 449
AclWI GGATC 1 cut(s) 351
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 387
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 2 cut(s) 56, 266
AjnI CCWGG 2 cut(s) 81, 217
AluBI AGCT 4 cut(s) 340, 371, 487, 579
AluI AGCT 4 cut(s) 340, 371, 487, 579
Alw21I GWGCWC 2 cut(s) 141, 532
Alw26I GTCTC 1 cut(s) 51
AlwI GGATC 1 cut(s) 351
AoxI GGCC 2 cut(s) 297, 474
ApoI RAATTY 1 cut(s) 173
Asp718I GGTACC 1 cut(s) 304
AspLEI GCGC 3 cut(s) 224, 226, 333
AspS9I GGNCC 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 2 cut(s) 128, 167
AvaII GGWCC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 304
Bbv12I GWGCWC 2 cut(s) 141, 532
BccI CCATC 1 cut(s) 460
BciT130I CCWGG 2 cut(s) 83, 219
BclI TGATCA 1 cut(s) 123
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 334
BfuAI ACCTGC 1 cut(s) 257
BisI GCNGC 1 cut(s) 387
BlpI GCTNAGC 2 cut(s) 341, 483
BlsI GCNGC 1 cut(s) 388
Bme1390I CCNGG 3 cut(s) 37, 83, 219
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 3 cut(s) 37, 83, 219
BmsI GCATC 2 cut(s) 225, 253
Bpu1102I GCTNAGC 2 cut(s) 341, 483
BpuEI CTTGAG 1 cut(s) 375
BpuMI CCSGG 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 3 cut(s) 300, 477, 571
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 266
Bse1I ACTGG 1 cut(s) 61
Bse3DI GCAATG 2 cut(s) 431, 555
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 2 cut(s) 83, 219
BseDI CCNNGG 3 cut(s) 300, 477, 571
BseGI GGATG 2 cut(s) 214, 268
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 2 cut(s) 56, 266
BseMI GCAATG 2 cut(s) 431, 555
BseMII CTCAG 3 cut(s) 66, 120, 502
BseNI ACTGG 1 cut(s) 61
BsePI GCGCGC 1 cut(s) 222
BseRI GAGGAG 2 cut(s) 469, 485
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 1 cut(s) 224
BshFI GGCC 2 cut(s) 299, 476
BshNI GGYRCC 1 cut(s) 304
BsiHKAI GWGCWC 2 cut(s) 141, 532
BsiSI CCGG 2 cut(s) 36, 260
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 56, 266
BsmAI GTCTC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 32
BsnI GGCC 2 cut(s) 299, 476
Bsp1286I GDGCHC 2 cut(s) 141, 532
Bsp143I GATC 4 cut(s) 123, 208, 356, 377
Bsp1720I GCTNAGC 2 cut(s) 341, 483
BspACI CCGC 4 cut(s) 50, 86, 386, 449
BspANI GGCC 2 cut(s) 299, 476
BspCNI CTCAG 3 cut(s) 67, 121, 501
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 306
BspMI ACCTGC 1 cut(s) 257
BspPI GGATC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 304
BsrDI GCAATG 2 cut(s) 431, 555
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 3 cut(s) 300, 477, 571
BssHII GCGCGC 1 cut(s) 222
BssMI GATC 4 cut(s) 123, 208, 356, 377
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 2 cut(s) 83, 219
BstC8I GCNNGC 2 cut(s) 224, 528
BstDEI CTNAG 6 cut(s) 75, 102, 129, 341, 483, 488
BstDSI CCRYGG 1 cut(s) 571
BstF5I GGATG 2 cut(s) 214, 268
BstFNI CGCG 1 cut(s) 224
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 3 cut(s) 224, 226, 333
BstKTI GATC 4 cut(s) 126, 211, 359, 380
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 4 cut(s) 123, 208, 356, 377
BstMWI GCNNNNNNNGC 2 cut(s) 337, 395
BstNI CCWGG 2 cut(s) 83, 219
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 3 cut(s) 35, 81, 217
BstUI CGCG 1 cut(s) 224
BsuRI GGCC 2 cut(s) 299, 476
BtgI CCRYGG 1 cut(s) 571
BtsCI GGATG 2 cut(s) 214, 268
BtsIMutI CAGTG 2 cut(s) 126, 496
BveI ACCTGC 1 cut(s) 257
Cac8I GCNNGC 2 cut(s) 224, 528
CfoI GCGC 3 cut(s) 224, 226, 333
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 305
CviAII CATG 2 cut(s) 196, 274
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 6 cut(s) 75, 102, 129, 341, 483, 488
DpnI GATC 4 cut(s) 125, 210, 358, 379
DpnII GATC 4 cut(s) 123, 208, 356, 377
EciI GGCGGA 2 cut(s) 39, 464
Eco130I CCWWGG 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 387
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 81, 217
EcoT14I CCWWGG 1 cut(s) 300
EcoT22I ATGCAT 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 2 cut(s) 199, 277
FaiI YATR 5 cut(s) 197, 275, 284, 310, 315
FaqI GGGAC 1 cut(s) 32
FatI CATG 2 cut(s) 195, 273
FbaI TGATCA 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 2 cut(s) 201, 275
Fsp4HI GCNGC 1 cut(s) 387
GlaI GCGC 3 cut(s) 223, 225, 332
GluI GCNGC 1 cut(s) 387
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 2 cut(s) 299, 476
HapII CCGG 2 cut(s) 36, 260
HhaI GCGC 3 cut(s) 224, 226, 333
Hin1II CATG 2 cut(s) 199, 277
Hin6I GCGC 3 cut(s) 222, 224, 331
HinP1I GCGC 3 cut(s) 222, 224, 331
HinfI GANTC 2 cut(s) 98, 286
HpaII CCGG 2 cut(s) 36, 260
HphI GGTGA 2 cut(s) 128, 167
Hpy188I TCNGA 5 cut(s) 76, 97, 208, 377, 537
Hpy188III TCNNGA 1 cut(s) 392
HpyAV CCTTC 3 cut(s) 54, 439, 538
HpyCH4V TGCA 7 cut(s) 4, 25, 199, 266, 419, 436, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 337, 395
HpyF3I CTNAG 6 cut(s) 75, 102, 129, 341, 483, 488
Hsp92II CATG 2 cut(s) 199, 277
HspAI GCGC 3 cut(s) 222, 224, 331
KpnI GGTACC 1 cut(s) 308
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 4 cut(s) 123, 208, 356, 377
LmnI GCTCC 1 cut(s) 523
LweI GCATC 2 cut(s) 225, 253
MaeIII GTNAC 1 cut(s) 269
MalI GATC 4 cut(s) 125, 210, 358, 379
MboI GATC 4 cut(s) 123, 208, 356, 377
MboII GAAGA 3 cut(s) 244, 553, 568
MhlI GDGCHC 2 cut(s) 141, 532
MluCI AATT 1 cut(s) 173
MlyI GAGTC 1 cut(s) 280
MnlI CCTC 8 cut(s) 4, 70, 124, 388, 447, 463, 466, 472
Mph1103I ATGCAT 1 cut(s) 201
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 2 cut(s) 36, 260
MspR9I CCNGG 3 cut(s) 37, 83, 219
MvaI CCWGG 2 cut(s) 83, 219
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 337, 395
NciI CCSGG 1 cut(s) 37
NdeII GATC 4 cut(s) 123, 208, 356, 377
NlaIII CATG 2 cut(s) 199, 277
NlaIV GGNNCC 1 cut(s) 306
NmeAIII GCCGAG 1 cut(s) 502
NsiI ATGCAT 1 cut(s) 201
NspI RCATGY 1 cut(s) 199
PauI GCGCGC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 388
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 2 cut(s) 81, 217
PspGI CCWGG 2 cut(s) 81, 217
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 1 cut(s) 79
PspPPI RGGWCCY 1 cut(s) 79
PteI GCGCGC 1 cut(s) 222
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 4 cut(s) 123, 208, 356, 377
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 1 cut(s) 280
ScrFI CCNGG 3 cut(s) 37, 83, 219
SduI GDGCHC 2 cut(s) 141, 532
SetI ASST 9 cut(s) 15, 84, 150, 157, 271, 342, 373, 489, 581
SfaNI GCATC 2 cut(s) 225, 253
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 390
SmoI CTYRAG 1 cut(s) 390
Sse9I AATT 1 cut(s) 173
SsiI CCGC 4 cut(s) 50, 86, 386, 449
StyD4I CCNGG 3 cut(s) 35, 81, 217
StyI CCWWGG 1 cut(s) 300
TaqI TCGA 2 cut(s) 141, 355
TasI AATT 1 cut(s) 173
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 2 cut(s) 133, 496
TspDTI ATGAA 2 cut(s) 178, 554
TspRI CASTG 2 cut(s) 133, 496
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 173
XceI RCATGY 1 cut(s) 199
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.