pycom15g38550

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008685
Physical Location & Seq
Reverse (-)
38319456 .. 38322727
3272 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 708 bp
ATGGGGGCGAAGGCGAAAAAGGCGATGAAAAAGCAATTGAGCAAAGCCTCTGCTCAATTATCAGCTTCTTCTCACAAAAATAAAGAAGCTGCTGCTACTGCTACTGTAACTGTTACTGCTTCTACCGCTGCTGATTTCTTGCCATTAGAAGGTGGTCCAGCTCGTAAGCTCCCCGAGGAAAAGCCCAAGGAGGATATTTGTACAGTTTTATACATTGGTCGGATACCTCACGGCTTCTATGAGAAGGAAATGGAAGGATTTTTTGGGCAATTTGGTTCGATTAAGAGATTAAGAATTGCGCGTAACAAAAAGACAGGAAAATCGAAGCATTTTGGCTTCATTGAGTTTGAAGACCCTGAGGTGGCAAAAGTTGTAGCTGACACTATGCATAACTATTTGTTGTTCGAACACGTGTTGCAAGTCCATCTTATTCCTCCACAGAAAGTTCACCCGAAATTATGGAAGGGTTTCAACTACCGAGTCAGACCCGAGAACTGGGTTCAAATTGAGCGGAAGAGGCATGACAAGGAAAGAACGGTGGAAGAGCTCAAGAAGTTAATGGAGAAGATTATGAAGAGAGATCTGAAGCGTCAAAAGAAAATTGAGGCCGCTGGTATTGATTATAAATGCCCAGAAATTGTGGGTGGTAGTGAAGAACCTGCTCCAAAGAAAAGGAAGACCGACCGGAAGAAGGTTGTTTCGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

236

Amino Acids

26.83

Weight (kDa)

9.88

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 70 - 139 6.4e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 624
Acc36I ACCTGC 1 cut(s) 667
AccBSI CCGCTC 1 cut(s) 511
AccII CGCG 1 cut(s) 301
AciI CCGC 3 cut(s) 126, 511, 609
AcuI CTGAAG 1 cut(s) 605
AcvI CACGTG 1 cut(s) 412
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 4 cut(s) 149, 361, 495, 691
AflIII ACRYGT 2 cut(s) 409, 411
AgsI TTSAA 3 cut(s) 350, 472, 503
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AluBI AGCT 6 cut(s) 65, 89, 161, 169, 377, 547
AluI AGCT 6 cut(s) 65, 89, 161, 169, 377, 547
Alw21I GWGCWC 1 cut(s) 549
Ama87I CYCGRG 2 cut(s) 173, 488
AoxI GGCC 1 cut(s) 606
ApeKI GCWGC 3 cut(s) 89, 92, 128
Asp700I GAANNNNTTC 1 cut(s) 467
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 440
AsuII TTCGAA 2 cut(s) 405, 701
AvaI CYCGRG 2 cut(s) 173, 488
AvaII GGWCC 1 cut(s) 155
AxyI CCTNAGG 1 cut(s) 357
BanII GRGCYC 1 cut(s) 549
BbrPI CACGTG 1 cut(s) 412
BbsI GAAGAC 2 cut(s) 357, 683
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 3 cut(s) 76, 79, 115
BccI CCATC 1 cut(s) 432
BceAI ACGGC 1 cut(s) 247
BciVI GTATCC 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 667
BfuI GTATCC 1 cut(s) 216
BglII AGATCT 1 cut(s) 580
BisI GCNGC 4 cut(s) 90, 93, 129, 609
BlsI GCNGC 4 cut(s) 91, 94, 130, 610
Bme18I GGWCC 1 cut(s) 155
BmeT110I CYCGRG 2 cut(s) 173, 488
BmgT120I GGNCC 1 cut(s) 155
BmrI ACTGGG 1 cut(s) 505
BmuI ACTGGG 1 cut(s) 505
BpiI GAAGAC 2 cut(s) 357, 683
Bpu14I TTCGAA 2 cut(s) 405, 701
BpuEI CTTGAG 1 cut(s) 533
BsaAI YACGTR 1 cut(s) 412
BsaJI CCNNGG 2 cut(s) 174, 186
BsaWI WCCGGW 1 cut(s) 684
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 361, 495, 691
Bse1I ACTGG 1 cut(s) 500
Bse21I CCTNAGG 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 174, 186
BseLI CCNNNNNNNGG 4 cut(s) 149, 361, 495, 691
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 500
BseXI GCAGC 3 cut(s) 76, 79, 115
Bsh1236I CGCG 1 cut(s) 301
Bsh1285I CGRYCG 1 cut(s) 685
BshFI GGCC 1 cut(s) 608
BsiEI CGRYCG 1 cut(s) 685
BsiHKAI GWGCWC 1 cut(s) 549
BsiHKCI CYCGRG 2 cut(s) 173, 488
BsiSI CCGG 1 cut(s) 685
BslI CCNNNNNNNGG 4 cut(s) 149, 361, 495, 691
BsnI GGCC 1 cut(s) 608
BsoBI CYCGRG 2 cut(s) 173, 488
Bsp119I TTCGAA 2 cut(s) 405, 701
Bsp1286I GDGCHC 1 cut(s) 549
Bsp1407I TGTACA 1 cut(s) 200
Bsp143I GATC 1 cut(s) 580
BspACI CCGC 3 cut(s) 126, 511, 609
BspANI GGCC 1 cut(s) 608
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 301
BspMI ACCTGC 1 cut(s) 667
BspQI GCTCTTC 1 cut(s) 537
BspT104I TTCGAA 2 cut(s) 405, 701
BsrBI CCGCTC 1 cut(s) 511
BsrGI TGTACA 1 cut(s) 200
BsrI ACTGG 1 cut(s) 500
BssECI CCNNGG 2 cut(s) 174, 186
BssMI GATC 1 cut(s) 580
BssT1I CCWWGG 1 cut(s) 186
Bst4CI ACNGT 4 cut(s) 106, 112, 205, 538
Bst6I CTCTTC 3 cut(s) 509, 537, 569
BstAUI TGTACA 1 cut(s) 200
BstBAI YACGTR 1 cut(s) 412
BstBI TTCGAA 2 cut(s) 405, 701
BstDEI CTNAG 1 cut(s) 357
BstFNI CGCG 1 cut(s) 301
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 1 cut(s) 583
BstMBI GATC 1 cut(s) 580
BstMCI CGRYCG 1 cut(s) 685
BstMWI GCNNNNNNNGC 4 cut(s) 20, 98, 125, 517
BstUI CGCG 1 cut(s) 301
BstV1I GCAGC 3 cut(s) 76, 79, 115
BstV2I GAAGAC 2 cut(s) 357, 683
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
Bsu36I CCTNAGG 1 cut(s) 357
BsuI GTATCC 1 cut(s) 216
BsuRI GGCC 1 cut(s) 608
BtgZI GCGATG 1 cut(s) 38
BveI ACCTGC 1 cut(s) 667
CfoI GCGC 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 155
CseI GACGC 1 cut(s) 578
Csp6I GTAC 1 cut(s) 201
CviAII CATG 1 cut(s) 521
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 1 cut(s) 357
DpnI GATC 1 cut(s) 582
DpnII GATC 1 cut(s) 580
Eam1104I CTCTTC 3 cut(s) 509, 537, 569
EarI CTCTTC 3 cut(s) 509, 537, 569
Ecl136II GAGCTC 1 cut(s) 547
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 549
Eco47I GGWCC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 547
Eco57I CTGAAG 1 cut(s) 605
Eco72I CACGTG 1 cut(s) 412
Eco81I CCTNAGG 1 cut(s) 357
Eco88I CYCGRG 2 cut(s) 173, 488
EcoICRI GAGCTC 1 cut(s) 547
EcoT14I CCWWGG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 390
EcoT38I GRGCYC 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 1 cut(s) 524
FaiI YATR 8 cut(s) 211, 240, 386, 390, 460, 522, 572, 624
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FatI CATG 1 cut(s) 520
Fnu4HI GCNGC 4 cut(s) 90, 93, 129, 609
FriOI GRGCYC 1 cut(s) 549
Fsp4HI GCNGC 4 cut(s) 90, 93, 129, 609
GlaI GCGC 1 cut(s) 300
GluI GCNGC 4 cut(s) 90, 93, 129, 609
HaeIII GGCC 1 cut(s) 608
HapII CCGG 1 cut(s) 685
HgaI GACGC 1 cut(s) 578
HhaI GCGC 1 cut(s) 301
Hin1II CATG 1 cut(s) 524
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HinfI GANTC 1 cut(s) 480
HpaII CCGG 1 cut(s) 685
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 3 cut(s) 222, 485, 585
Hpy188III TCNNGA 1 cut(s) 550
Hpy8I GTNNAC 1 cut(s) 448
HpyAV CCTTC 6 cut(s) 4, 143, 238, 248, 457, 685
HpyCH4III ACNGT 4 cut(s) 106, 112, 205, 538
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 2 cut(s) 388, 418
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 98, 125, 517
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 1 cut(s) 524
HspAI GCGC 1 cut(s) 299
Kzo9I GATC 1 cut(s) 580
LguI GCTCTTC 1 cut(s) 537
LmnI GCTCC 2 cut(s) 174, 667
LpnPI CCDG 8 cut(s) 171, 300, 369, 481, 597, 645, 672, 698
Lsp1109I GCAGC 3 cut(s) 76, 79, 115
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 3 cut(s) 106, 112, 302
MalI GATC 1 cut(s) 582
MbiI CCGCTC 1 cut(s) 511
MboI GATC 1 cut(s) 580
MboII GAAGA 9 cut(s) 60, 362, 526, 554, 577, 586, 665, 688, 700
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 8 cut(s) 35, 56, 269, 294, 455, 504, 600, 636
MlyI GAGTC 1 cut(s) 489
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 8 cut(s) 58, 169, 184, 237, 352, 444, 510, 598
Mph1103I ATGCAT 1 cut(s) 390
MroXI GAANNNNTTC 1 cut(s) 467
MseI TTAA 3 cut(s) 282, 290, 557
MspA1I CMGCKG 2 cut(s) 128, 611
MspI CCGG 1 cut(s) 685
MunI CAATTG 1 cut(s) 35
MvnI CGCG 1 cut(s) 301
MwoI GCNNNNNNNGC 4 cut(s) 20, 98, 125, 517
NdeII GATC 1 cut(s) 580
NlaIII CATG 1 cut(s) 524
NsiI ATGCAT 1 cut(s) 390
NspV TTCGAA 2 cut(s) 405, 701
PciSI GCTCTTC 1 cut(s) 537
PdmI GAANNNNTTC 1 cut(s) 467
PkrI GCNGC 4 cut(s) 91, 94, 130, 610
PleI GAGTC 1 cut(s) 488
PmaCI CACGTG 1 cut(s) 412
PmlI CACGTG 1 cut(s) 412
PpsI GAGTC 1 cut(s) 488
Ppu21I YACGTR 1 cut(s) 412
PsiI TTATAA 1 cut(s) 624
Psp124BI GAGCTC 1 cut(s) 549
PspCI CACGTG 1 cut(s) 412
PspPI GGNCC 1 cut(s) 155
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SacI GAGCTC 1 cut(s) 549
SapI GCTCTTC 1 cut(s) 537
SaqAI TTAA 3 cut(s) 282, 290, 557
SatI GCNGC 4 cut(s) 90, 93, 129, 609
Sau3AI GATC 1 cut(s) 580
Sau96I GGNCC 1 cut(s) 155
SchI GAGTC 1 cut(s) 489
SduI GDGCHC 1 cut(s) 549
SfuI TTCGAA 2 cut(s) 405, 701
SinI GGWCC 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 8 cut(s) 35, 56, 269, 294, 455, 504, 600, 636
SsiI CCGC 3 cut(s) 126, 511, 609
SstI GAGCTC 1 cut(s) 549
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 4 cut(s) 106, 112, 205, 538
TaiI ACGT 1 cut(s) 414
TaqI TCGA 4 cut(s) 278, 323, 405, 701
TaqII GACCGA 1 cut(s) 695
TasI AATT 8 cut(s) 35, 56, 269, 294, 455, 504, 600, 636
TatI WGTACW 1 cut(s) 200
TauI GCSGC 1 cut(s) 611
Tru1I TTAA 3 cut(s) 282, 290, 557
Tru9I TTAA 3 cut(s) 282, 290, 557
TseI GCWGC 3 cut(s) 89, 92, 128
TspDTI ATGAA 3 cut(s) 41, 328, 587
VpaK11BI GGWCC 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 467
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.