pycom16g00790

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0004396
Physical Location & Seq
Forward (+)
475372 .. 477911
2540 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1290 bp
ATGGCTAGTGACCGGCGATTGAAGGATAGCACATTAGTCAATTCAAGAATTAGGAACCAAGAAGACCCTTCATTAGATTATGATAGTGGGCATGATGCAATGGGTGTGTCCTCATCCATATTTGAGTTTCAGAAGGCAGAGCGTGCCCCACAAAGGGTGCCTCTTGCGCCGTTCTCCAAACCAGCACCGTCCAAATGGGATGATGCTCAGAAATGGATAGCAAGCCCAACTTCAAACCGGCCAAAGATGGGGCAGGCTCAAATGCAGGTTGGGCAAGGAGTTGGATCGCGAAAGGCTGGTAGCTTTGGTTATGGGAGTAAACAATTGAGCACAAAGGTTGTTGTTGAAGTTCCAGATCAAAAAGTAGATATTTTTGAAGAACCAGATACGAAGCGAATTGACACAAATCAATCTAAGATGGAAAGTGGAGGGCAGAAGTGTGTAAGTTGGGAGCCTGATCCATATCCCATTGCCGATTCATATGGCAAATCAGTGCTCATGGTTGAGAACTCTGTCGGAGAGTCAGCAATCAATCTTAGCCAGCATGATTCTTCTACAGCGTTTCATGGAACAACAACATTTATTCCTCCTCCTTCAACCGCAAGATCTGTCTCAATGAGAGATATGGGTACAGAGATGACGCCTATTGCTAGCCAGGAACCCTCCAGGACTGGAACTCCAGTGGGGGCAACAACACCGATTCGCAGTCCTACTAATTCAAGGCCATCAACTCCTAGCAGAGCTGCGCAAGCTTCATCTCCAATCAACCAGAATCCTAACAAGGAGTTGTCTGAAAAGGAGTTACAAATGAAAACTAGGAGAGAGATAATGGTTCTTGGGACACAGTTGGGTAAGATGAACATCGCTGCTTGGGCTAGCAAGGAGGAGGATAAGGGTGCATCCACGTCACAGAAAACTACACCAGAAGAACAACCGGGGAAAAGCATTGTTGAGACACGTGCAGCAGCATGGGAAGAAGCTGAGAAAGCCAAGTATATGGCTAGGTTCAAGCGTGAAGAGATGAAAATACAAGCTTGGGAAAATCATCAGAAAGCAAAAACAGAAGCTGAGATGAGGAAAATCGAGGTAGAGGTTGAAAGGATAAGAGGACGCGCTAATGGCAAGCTTATGAATAAGTTGGCAGCTGCAAGACATAAGGCTCAAGAAAAGCGAGCAGCAGCGGAGGCCAGGAGAAACCGGCAAGCAGCGAAAACAGAACATCAAGCAGAGTACATTCGCAAAACCGGTCGCATCCCGTCCTCGTTTTGGTGTTGGGGTTGGTGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

430

Amino Acids

47.6

Weight (kDa)

9.49

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 317 - 420 4e-35 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 747
Acc36I ACCTGC 1 cut(s) 256
AccB1I GGYRCC 1 cut(s) 157
AccII CGCG 2 cut(s) 289, 1113
AciI CCGC 2 cut(s) 600, 1181
AclWI GGATC 2 cut(s) 292, 452
AcoI YGGCCR 1 cut(s) 239
AcvI CACGTG 1 cut(s) 959
AcyI GRCGYC 1 cut(s) 641
AfaI GTAC 2 cut(s) 631, 1232
AfiI CCNNNNNNNGG 4 cut(s) 153, 154, 248, 1266
AflIII ACRYGT 1 cut(s) 956
AgeI ACCGGT 1 cut(s) 1244
AgsI TTSAA 9 cut(s) 22, 45, 234, 347, 377, 597, 720, 1009, 1097
AjiI CACGTC 1 cut(s) 906
AjnI CCWGG 3 cut(s) 654, 665, 1187
AluBI AGCT 8 cut(s) 303, 743, 752, 980, 1034, 1067, 1126, 1145
AluI AGCT 8 cut(s) 303, 743, 752, 980, 1034, 1067, 1126, 1145
Alw21I GWGCWC 3 cut(s) 332, 498, 1286
Alw26I GTCTC 2 cut(s) 616, 947
AlwI GGATC 2 cut(s) 292, 452
AlwNI CAGNNNCTG 1 cut(s) 1067
AoxI GGCC 3 cut(s) 239, 722, 1185
ApeKI GCWGC 9 cut(s) 743, 866, 962, 965, 1142, 1145, 1175, 1178, 1205
AsiGI ACCGGT 1 cut(s) 1244
AspLEI GCGC 3 cut(s) 169, 748, 1115
AsuC2I CCSGG 1 cut(s) 936
AsuNHI GCTAGC 2 cut(s) 650, 875
BaeGI GKGCMC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 157
BbrPI CACGTG 1 cut(s) 959
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 3 cut(s) 332, 498, 1286
BbvI GCAGC 9 cut(s) 730, 853, 974, 977, 1132, 1154, 1187, 1190, 1217
BccI CCATC 3 cut(s) 241, 412, 733
BceAI ACGGC 1 cut(s) 154
BciT130I CCWGG 3 cut(s) 656, 667, 1189
BcnI CCSGG 1 cut(s) 936
BcoDI GTCTC 2 cut(s) 616, 947
BfaI CTAG 6 cut(s) 6, 651, 735, 816, 876, 1002
BfmI CTRYAG 1 cut(s) 555
BfuAI ACCTGC 1 cut(s) 256
BglII AGATCT 1 cut(s) 605
BisI GCNGC 9 cut(s) 744, 867, 963, 966, 1143, 1146, 1176, 1179, 1206
BlsI GCNGC 9 cut(s) 745, 868, 964, 967, 1144, 1147, 1177, 1180, 1207
Bme1390I CCNGG 4 cut(s) 656, 667, 936, 1189
BmgBI CACGTC 1 cut(s) 906
BmiI GGNNCC 4 cut(s) 56, 159, 453, 660
BmrFI CCNGG 4 cut(s) 656, 667, 936, 1189
BmsI GCATC 4 cut(s) 85, 193, 908, 1260
BmtI GCTAGC 2 cut(s) 654, 879
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 2 cut(s) 649, 663
BpuEI CTTGAG 1 cut(s) 1146
BpuMI CCSGG 1 cut(s) 936
BsaAI YACGTR 1 cut(s) 959
BsaBI GATNNNNATC 2 cut(s) 462, 860
BsaHI GRCGYC 1 cut(s) 641
BsaJI CCNNGG 1 cut(s) 935
BsaWI WCCGGW 1 cut(s) 1244
BsaXI ACNNNNNCTCC 2 cut(s) 661, 691
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 154, 248, 1266
Bse118I RCCGGY 4 cut(s) 12, 237, 1197, 1244
Bse1I ACTGG 2 cut(s) 676, 680
Bse3DI GCAATG 2 cut(s) 105, 468
Bse8I GATNNNNATC 2 cut(s) 462, 860
BseBI CCWGG 3 cut(s) 656, 667, 1189
BseDI CCNNGG 1 cut(s) 935
BseGI GGATG 4 cut(s) 113, 205, 899, 1251
BseJI GATNNNNATC 2 cut(s) 462, 860
BseLI CCNNNNNNNGG 4 cut(s) 153, 154, 248, 1266
BseMI GCAATG 2 cut(s) 105, 468
BseMII CTCAG 3 cut(s) 221, 972, 1059
BseNI ACTGG 2 cut(s) 676, 680
BseRI GAGGAG 2 cut(s) 579, 899
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 9 cut(s) 730, 853, 974, 977, 1132, 1154, 1187, 1190, 1217
BsgI GTGCAG 1 cut(s) 981
Bsh1236I CGCG 2 cut(s) 289, 1113
Bsh1285I CGRYCG 1 cut(s) 1249
BshFI GGCC 3 cut(s) 241, 724, 1187
BshNI GGYRCC 1 cut(s) 157
BshTI ACCGGT 1 cut(s) 1244
BsiEI CGRYCG 1 cut(s) 1249
BsiHKAI GWGCWC 3 cut(s) 332, 498, 1286
BsiSI CCGG 5 cut(s) 13, 238, 935, 1198, 1245
BslFI GGGAC 1 cut(s) 853
BslI CCNNNNNNNGG 4 cut(s) 153, 154, 248, 1266
BsmAI GTCTC 2 cut(s) 616, 947
BsmFI GGGAC 1 cut(s) 853
BsnI GGCC 3 cut(s) 241, 724, 1187
Bsp1286I GDGCHC 4 cut(s) 148, 332, 498, 1286
Bsp143I GATC 4 cut(s) 284, 355, 457, 605
Bsp68I TCGCGA 1 cut(s) 289
BspACI CCGC 2 cut(s) 600, 1181
BspANI GGCC 3 cut(s) 241, 724, 1187
BspCNI CTCAG 3 cut(s) 220, 973, 1060
BspFNI CGCG 2 cut(s) 289, 1113
BspLI GGNNCC 4 cut(s) 56, 159, 453, 660
BspMI ACCTGC 1 cut(s) 256
BspOI GCTAGC 2 cut(s) 654, 879
BspPI GGATC 2 cut(s) 292, 452
BspT107I GGYRCC 1 cut(s) 157
BsrDI GCAATG 2 cut(s) 105, 468
BsrFI RCCGGY 4 cut(s) 12, 237, 1197, 1244
BsrI ACTGG 2 cut(s) 676, 680
BssAI RCCGGY 4 cut(s) 12, 237, 1197, 1244
BssECI CCNNGG 1 cut(s) 935
BssMI GATC 4 cut(s) 284, 355, 457, 605
BssNI GRCGYC 1 cut(s) 641
Bst2UI CCWGG 3 cut(s) 656, 667, 1189
Bst4CI ACNGT 2 cut(s) 189, 846
Bst6I CTCTTC 1 cut(s) 1011
BstACI GRCGYC 1 cut(s) 641
BstAPI GCANNNNNTGC 1 cut(s) 143
BstBAI YACGTR 1 cut(s) 959
BstDEI CTNAG 5 cut(s) 207, 414, 536, 981, 1068
BstF5I GGATG 4 cut(s) 113, 205, 899, 1251
BstFNI CGCG 2 cut(s) 289, 1113
BstHHI GCGC 3 cut(s) 169, 748, 1115
BstKTI GATC 4 cut(s) 287, 358, 460, 608
BstMAI GTCTC 2 cut(s) 616, 947
BstMBI GATC 4 cut(s) 284, 355, 457, 605
BstMCI CGRYCG 1 cut(s) 1249
BstMWI GCNNNNNNNGC 8 cut(s) 143, 166, 271, 749, 872, 986, 1119, 1184
BstNI CCWGG 3 cut(s) 656, 667, 1189
BstSCI CCNGG 4 cut(s) 654, 665, 934, 1187
BstSFI CTRYAG 1 cut(s) 555
BstSLI GKGCMC 1 cut(s) 148
BstUI CGCG 2 cut(s) 289, 1113
BstV1I GCAGC 9 cut(s) 730, 853, 974, 977, 1132, 1154, 1187, 1190, 1217
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 605
BstXI CCANNNNNNTGG 1 cut(s) 997
BstYI RGATCY 1 cut(s) 605
BsuRI GGCC 3 cut(s) 241, 724, 1187
BtgZI GCGATG 1 cut(s) 847
BtrI CACGTC 1 cut(s) 906
BtsCI GGATG 4 cut(s) 113, 205, 899, 1251
BtsIMutI CAGTG 2 cut(s) 498, 687
BtuMI TCGCGA 1 cut(s) 289
BveI ACCTGC 1 cut(s) 256
CaiI CAGNNNCTG 1 cut(s) 1067
CfoI GCGC 3 cut(s) 169, 748, 1115
Cfr10I RCCGGY 4 cut(s) 12, 237, 1197, 1244
CseI GACGC 2 cut(s) 649, 1119
Csp6I GTAC 2 cut(s) 630, 1231
CspAI ACCGGT 1 cut(s) 1244
CviAII CATG 5 cut(s) 92, 499, 545, 566, 969
CviQI GTAC 2 cut(s) 630, 1231
DdeI CTNAG 5 cut(s) 207, 414, 536, 981, 1068
DpnI GATC 4 cut(s) 286, 357, 459, 607
DpnII GATC 4 cut(s) 284, 355, 457, 605
EaeI YGGCCR 1 cut(s) 239
Eam1104I CTCTTC 1 cut(s) 1011
EarI CTCTTC 1 cut(s) 1011
Eco72I CACGTG 1 cut(s) 959
EcoRII CCWGG 3 cut(s) 654, 665, 1187
FaeI CATG 5 cut(s) 95, 502, 548, 569, 972
FalI AAGNNNNNCTT 2 cut(s) 214, 246
FaqI GGGAC 1 cut(s) 853
FatI CATG 5 cut(s) 91, 498, 544, 565, 968
FauNDI CATATG 1 cut(s) 481
Fnu4HI GCNGC 9 cut(s) 744, 867, 963, 966, 1143, 1146, 1176, 1179, 1206
FokI GGATG 4 cut(s) 100, 212, 886, 1238
Fsp4HI GCNGC 9 cut(s) 744, 867, 963, 966, 1143, 1146, 1176, 1179, 1206
FspBI CTAG 6 cut(s) 6, 651, 735, 816, 876, 1002
FspI TGCGCA 1 cut(s) 747
GlaI GCGC 3 cut(s) 168, 747, 1114
GluI GCNGC 9 cut(s) 744, 867, 963, 966, 1143, 1146, 1176, 1179, 1206
GsuI CTGGAG 2 cut(s) 649, 663
HaeIII GGCC 3 cut(s) 241, 724, 1187
HapII CCGG 5 cut(s) 13, 238, 935, 1198, 1245
HgaI GACGC 2 cut(s) 649, 1119
HhaI GCGC 3 cut(s) 169, 748, 1115
Hin1I GRCGYC 1 cut(s) 641
Hin1II CATG 5 cut(s) 95, 502, 548, 569, 972
Hin6I GCGC 3 cut(s) 167, 746, 1113
HinP1I GCGC 3 cut(s) 167, 746, 1113
HindIII AAGCTT 3 cut(s) 750, 1032, 1124
HinfI GANTC 5 cut(s) 476, 521, 548, 700, 772
HpaII CCGG 5 cut(s) 13, 238, 935, 1198, 1245
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 5 cut(s) 132, 210, 518, 793, 1050
Hpy188III TCNNGA 5 cut(s) 45, 288, 353, 1163, 1287
Hpy8I GTNNAC 1 cut(s) 320
HpyAV CCTTC 4 cut(s) 16, 78, 127, 603
HpyCH4III ACNGT 2 cut(s) 189, 846
HpyCH4IV ACGT 2 cut(s) 905, 958
HpyCH4V TGCA 5 cut(s) 98, 265, 899, 962, 1148
HpyF10VI GCNNNNNNNGC 8 cut(s) 143, 166, 271, 749, 872, 986, 1119, 1184
HpyF3I CTNAG 5 cut(s) 207, 414, 536, 981, 1068
HpySE526I ACGT 2 cut(s) 905, 958
Hsp92I GRCGYC 1 cut(s) 641
Hsp92II CATG 5 cut(s) 95, 502, 548, 569, 972
HspAI GCGC 3 cut(s) 167, 746, 1113
Kzo9I GATC 4 cut(s) 284, 355, 457, 605
LmnI GCTCC 1 cut(s) 451
Lsp1109I GCAGC 9 cut(s) 730, 853, 974, 977, 1132, 1154, 1187, 1190, 1217
LweI GCATC 4 cut(s) 85, 193, 908, 1260
MaeI CTAG 6 cut(s) 6, 651, 735, 816, 876, 1002
MaeII ACGT 2 cut(s) 905, 958
MaeIII GTNAC 3 cut(s) 8, 801, 906
MalI GATC 4 cut(s) 286, 357, 459, 607
MboI GATC 4 cut(s) 284, 355, 457, 605
MboII GAAGA 6 cut(s) 74, 389, 543, 938, 986, 1028
MfeI CAATTG 1 cut(s) 323
MflI RGATCY 1 cut(s) 605
MhlI GDGCHC 4 cut(s) 148, 332, 498, 1286
MluCI AATT 5 cut(s) 40, 48, 323, 396, 715
MlyI GAGTC 1 cut(s) 530
MmeI TCCRAC 2 cut(s) 262, 496
MspA1I CMGCKG 2 cut(s) 1145, 1181
MspI CCGG 5 cut(s) 13, 238, 935, 1198, 1245
MspR9I CCNGG 4 cut(s) 656, 667, 936, 1189
MunI CAATTG 1 cut(s) 323
MvaI CCWGG 3 cut(s) 656, 667, 1189
MvnI CGCG 2 cut(s) 289, 1113
MwoI GCNNNNNNNGC 8 cut(s) 143, 166, 271, 749, 872, 986, 1119, 1184
NciI CCSGG 1 cut(s) 936
NdeI CATATG 1 cut(s) 481
NdeII GATC 4 cut(s) 284, 355, 457, 605
NheI GCTAGC 2 cut(s) 650, 875
NlaIII CATG 5 cut(s) 95, 502, 548, 569, 972
NlaIV GGNNCC 4 cut(s) 56, 159, 453, 660
NmuCI GTSAC 2 cut(s) 8, 906
NruI TCGCGA 1 cut(s) 289
NsbI TGCGCA 1 cut(s) 747
PfeI GAWTC 4 cut(s) 476, 548, 700, 772
PfoI TCCNGGA 1 cut(s) 665
PinAI ACCGGT 1 cut(s) 1244
PkrI GCNGC 9 cut(s) 745, 868, 964, 967, 1144, 1147, 1177, 1180, 1207
PleI GAGTC 1 cut(s) 529
PmaCI CACGTG 1 cut(s) 959
PmlI CACGTG 1 cut(s) 959
PpsI GAGTC 1 cut(s) 529
Ppu21I YACGTR 1 cut(s) 959
Psp6I CCWGG 3 cut(s) 654, 665, 1187
PspCI CACGTG 1 cut(s) 959
PspGI CCWGG 3 cut(s) 654, 665, 1187
PspN4I GGNNCC 4 cut(s) 56, 159, 453, 660
PstNI CAGNNNCTG 1 cut(s) 1067
PsuI RGATCY 1 cut(s) 605
PvuII CAGCTG 1 cut(s) 1145
RruI TCGCGA 1 cut(s) 289
RsaI GTAC 2 cut(s) 631, 1232
RsaNI GTAC 2 cut(s) 630, 1231
SatI GCNGC 9 cut(s) 744, 867, 963, 966, 1143, 1146, 1176, 1179, 1206
Sau3AI GATC 4 cut(s) 284, 355, 457, 605
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 4 cut(s) 656, 667, 936, 1189
SduI GDGCHC 4 cut(s) 148, 332, 498, 1286
SfaNI GCATC 4 cut(s) 85, 193, 908, 1260
SfcI CTRYAG 1 cut(s) 555
SmlI CTYRAG 1 cut(s) 1161
SmoI CTYRAG 1 cut(s) 1161
Sse9I AATT 5 cut(s) 40, 48, 323, 396, 715
SsiI CCGC 2 cut(s) 600, 1181
SspMI CTAG 6 cut(s) 6, 651, 735, 816, 876, 1002
StyD4I CCNGG 4 cut(s) 654, 665, 934, 1187
TaaI ACNGT 2 cut(s) 189, 846
TaiI ACGT 2 cut(s) 908, 961
TaqI TCGA 1 cut(s) 1083
TasI AATT 5 cut(s) 40, 48, 323, 396, 715
TatI WGTACW 1 cut(s) 1230
TfiI GAWTC 4 cut(s) 476, 548, 700, 772
TscAI CASTG 2 cut(s) 498, 687
TseFI GTSAC 2 cut(s) 8, 906
TseI GCWGC 9 cut(s) 743, 866, 962, 965, 1142, 1145, 1175, 1178, 1205
Tsp45I GTSAC 2 cut(s) 8, 906
TspDTI ATGAA 8 cut(s) 60, 468, 554, 744, 824, 872, 1037, 1145
TspRI CASTG 2 cut(s) 498, 687
XspI CTAG 6 cut(s) 6, 651, 735, 816, 876, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.