Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005658

Physical Location & Seq

Genomic Coordinates Forward (+)

1740466 .. 1741245

Gene Structure 780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAAGCTGGGATTTTGTTGCCTCCCCCGACCTCCTCCTCCCCTCTATCACCTCCTACGTCGTCTGTGATTCTAACCCAGGACGAGTTGAAGAAAATCGCCGCCTACAAGGCCGTCGAGTATGTTGAGTCCGGCATGGTCCTCGGTCTCGGCACCGGCTCCACCGCCAAGCACGCCGTCGACCGAATCGGCGAGCTTTTGAAACAGGGGAAGCTTCAGAACATTGTAGGAATACCCACGTCGAAAATGACCCACGAGCAAGCCCTGTCTCTTGGAATTCCGTTGTCGGACCTGGATTCGCACCCTGTTCTTGATCTCGCAATCGACGGCGCCGACGAGGTCGATCCCCACCTCAATTTGGTCAAGGGCCGAGGTGGATCCCTCTTGAGGGAGAAGATGGTGGAGGGTGCTTGTAAGAAATTCGTCTGCATCGTCGACGAGTCGAAGCTTGTGAAGCATTTGGGAGGCAGCGGGCTGGCGATGCCGGTGGAAATTGTGCCGTTCTGCTGGAAATTCACGGCCAAAAAGCTCCAGGATTTGTTTGAGTACGCGGGTTGCGTCGGAAAGCTGAGGACTTACGTCGAAAATGGCAAGCCTTTTGTGACGGACAATGGGAATTACATTGTGGATTTGTATTTCCAGAAAGATATTGGGGATTTGAAGGCGGCCAGCGACGCGATTTTGCAGCTTGCCGGAGTTGTGGAGCATGGGATGTTCCTGGACATGGCAACCACTGTGATTGTTGCAGGGGAGCTCGGAATAACGGTGAAGAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004751 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0008219 GO:0009791 GO:0009987 GO:0010228 GO:0016853 GO:0016860 GO:0016861 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

260

Amino Acids

27.67

Weight (kDa)

5.71

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	76 - 251	9.7e-63	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71100 AT2G01290
fragaria_vesca	FvH4_1g20420 FvH4_4g32160
malus_domestica	MD13G1028000.v1.1
prunus_persica	Prupe.1G322200_v2.0.a1
pyrus_communis	pycom13g02640 pycom16g02690
rosa_chinensis	RchiOBHm_Chr2g0112671 RchiOBHm_Chr4g0440871
rosa_laevigata	RLG00000006142 RLG00000018001
rosa_multiflora	Rmu_sc0000424.1_g000018 Rmu_sc0001708.1_g000048
rosa_roxburghii	Rroxscaffold_5G00381730
rosa_rugosa	Rorug02G0181800 Rorug04G0329200
rosa_samantha	Rh2AG236300 Rh2BG249100 Rh2CG240100 Rh2DG243600 Rh4AG380800 Rh4BG393900 Rh4CG408700 Rh4DG387300 Rh7BG301600
rosa_wichuraiana	Rw2G018250 Rw4G032790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	152, 329
AccI	GTMKAC	2 cut(s)	180, 435
AccII	CGCG	2 cut(s)	551, 677
AciI	CCGC	5 cut(s)	102, 165, 471, 551, 665
AclWI	GGATC	3 cut(s)	338, 372, 385
AcoI	YGGCCR	2 cut(s)	519, 666
AcsI	RAATTY	3 cut(s)	276, 419, 512
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	4 cut(s)	358, 387, 388, 724
AgsI	TTSAA	3 cut(s)	91, 202, 661
AjiI	CACGTC	1 cut(s)	240
AjnI	CCWGG	4 cut(s)	78, 291, 531, 717
AluBI	AGCT	8 cut(s)	8, 196, 214, 448, 529, 568, 688, 754
AluI	AGCT	8 cut(s)	8, 196, 214, 448, 529, 568, 688, 754
Alw21I	GWGCWC	1 cut(s)	756
Alw26I	GTCTC	2 cut(s)	152, 273
AlwI	GGATC	3 cut(s)	338, 372, 385
AoxI	GGCC	4 cut(s)	111, 367, 519, 666
ApeKI	GCWGC	2 cut(s)	468, 685
ApoI	RAATTY	3 cut(s)	276, 419, 512
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	3 cut(s)	139, 289, 367
AsuHPI	GGTGA	2 cut(s)	42, 778
AvaII	GGWCC	2 cut(s)	139, 289
BamHI	GGATCC	1 cut(s)	377
BanI	GGYRCC	2 cut(s)	152, 329
BanII	GRGCYC	1 cut(s)	756
BauI	CACGAG	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	756
BbvCI	CCTCAGC	1 cut(s)	569
BbvI	GCAGC	2 cut(s)	480, 697
BccI	CCATC	1 cut(s)	391
BceAI	ACGGC	5 cut(s)	98, 161, 343, 484, 534
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BciT130I	CCWGG	4 cut(s)	80, 293, 533, 719
BcoDI	GTCTC	2 cut(s)	152, 273
BfoI	RGCGCY	1 cut(s)	333
BglI	GCCNNNNNGGC	1 cut(s)	110
BisI	GCNGC	4 cut(s)	102, 469, 666, 686
BlsI	GCNGC	4 cut(s)	103, 470, 667, 687
Bme1390I	CCNGG	4 cut(s)	80, 293, 533, 719
Bme18I	GGWCC	2 cut(s)	139, 289
BmgBI	CACGTC	1 cut(s)	240
BmgT120I	GGNCC	3 cut(s)	139, 289, 367
BmiI	GGNNCC	4 cut(s)	154, 160, 331, 379
BmrFI	CCNGG	4 cut(s)	80, 293, 533, 719
BmsI	GCATC	2 cut(s)	438, 471
BoxI	GACNNNNGTC	1 cut(s)	578
BpmI	CTGGAG	1 cut(s)	515
Bpu10I	CCTNAGC	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	406
BsaHI	GRCGYC	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	78, 142, 370
Bsc4I	CCNNNNNNNGG	4 cut(s)	358, 387, 388, 724
Bse118I	RCCGGY	2 cut(s)	155, 484
BseBI	CCWGG	4 cut(s)	80, 293, 533, 719
BseDI	CCNNGG	3 cut(s)	78, 142, 370
BseGI	GGATG	1 cut(s)	717
BseLI	CCNNNNNNNGG	4 cut(s)	358, 387, 388, 724
BseMII	CTCAG	1 cut(s)	560
BseRI	GAGGAG	2 cut(s)	25, 28
BseXI	GCAGC	2 cut(s)	480, 697
BseYI	CCCAGC	1 cut(s)	8
Bsh1236I	CGCG	2 cut(s)	551, 677
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	4 cut(s)	113, 369, 521, 668
BshNI	GGYRCC	2 cut(s)	152, 329
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	756
BsiSI	CCGG	4 cut(s)	132, 156, 485, 693
BslI	CCNNNNNNNGG	4 cut(s)	358, 387, 388, 724
BsmAI	GTCTC	2 cut(s)	152, 273
BsnI	GGCC	4 cut(s)	113, 369, 521, 668
Bso31I	GGTCTC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	756
Bsp143I	GATC	3 cut(s)	313, 343, 377
BspACI	CCGC	5 cut(s)	102, 165, 471, 551, 665
BspANI	GGCC	4 cut(s)	113, 369, 521, 668
BspCNI	CTCAG	1 cut(s)	561
BspFNI	CGCG	2 cut(s)	551, 677
BspLI	GGNNCC	4 cut(s)	154, 160, 331, 379
BspPI	GGATC	3 cut(s)	338, 372, 385
BspT107I	GGYRCC	2 cut(s)	152, 329
BspTNI	GGTCTC	1 cut(s)	152
BsrFI	RCCGGY	2 cut(s)	155, 484
BssAI	RCCGGY	2 cut(s)	155, 484
BssECI	CCNNGG	3 cut(s)	78, 142, 370
BssMI	GATC	3 cut(s)	313, 343, 377
BssNI	GRCGYC	1 cut(s)	330
BssSI	CACGAG	1 cut(s)	254
Bst2BI	CACGAG	1 cut(s)	254
Bst2UI	CCWGG	4 cut(s)	80, 293, 533, 719
Bst4CI	ACNGT	2 cut(s)	736, 766
BstACI	GRCGYC	1 cut(s)	330
BstC8I	GCNNGC	8 cut(s)	174, 194, 261, 473, 477, 593, 670, 690
BstDEI	CTNAG	1 cut(s)	569
BstF5I	GGATG	1 cut(s)	717
BstFNI	CGCG	2 cut(s)	551, 677
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	3 cut(s)	316, 346, 380
BstMAI	GTCTC	2 cut(s)	152, 273
BstMBI	GATC	3 cut(s)	313, 343, 377
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 173, 454, 481, 674
BstNI	CCWGG	4 cut(s)	80, 293, 533, 719
BstPAI	GACNNNNGTC	1 cut(s)	578
BstSCI	CCNGG	4 cut(s)	78, 291, 531, 717
BstUI	CGCG	2 cut(s)	551, 677
BstV1I	GCAGC	2 cut(s)	480, 697
BstX2I	RGATCY	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	377
BsuRI	GGCC	4 cut(s)	113, 369, 521, 668
BtgZI	GCGATG	1 cut(s)	494
BtrI	CACGTC	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	717
BtsIMutI	CAGTG	1 cut(s)	732
Cac8I	GCNNGC	8 cut(s)	174, 194, 261, 473, 477, 593, 670, 690
CfoI	GCGC	1 cut(s)	332
Cfr10I	RCCGGY	2 cut(s)	155, 484
Cfr13I	GGNCC	3 cut(s)	139, 289, 367
CseI	GACGC	2 cut(s)	547, 683
Csp6I	GTAC	1 cut(s)	547
CspCI	CAANNNNNGTGG	2 cut(s)	721, 756
CviAII	CATG	3 cut(s)	136, 707, 724
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	1 cut(s)	569
DinI	GGCGCC	1 cut(s)	331
DpnI	GATC	3 cut(s)	315, 345, 379
DpnII	GATC	3 cut(s)	313, 343, 377
EaeI	YGGCCR	2 cut(s)	519, 666
Ecl136II	GAGCTC	1 cut(s)	754
Eco24I	GRGCYC	1 cut(s)	756
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	2 cut(s)	139, 289
Eco53kI	GAGCTC	1 cut(s)	754
Eco57I	CTGAAG	1 cut(s)	200
EcoICRI	GAGCTC	1 cut(s)	754
EcoRI	GAATTC	1 cut(s)	276
EcoRII	CCWGG	4 cut(s)	78, 291, 531, 717
EcoT38I	GRGCYC	1 cut(s)	756
EgeI	GGCGCC	1 cut(s)	331
EheI	GGCGCC	1 cut(s)	331
FaeI	CATG	3 cut(s)	139, 710, 727
FaiI	YATR	4 cut(s)	123, 137, 708, 725
FatI	CATG	3 cut(s)	135, 706, 723
FauI	CCCGC	2 cut(s)	464, 544
FblI	GTMKAC	2 cut(s)	180, 435
Fnu4HI	GCNGC	4 cut(s)	102, 469, 666, 686
FokI	GGATG	1 cut(s)	724
FriOI	GRGCYC	1 cut(s)	756
Fsp4HI	GCNGC	4 cut(s)	102, 469, 666, 686
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	4 cut(s)	102, 469, 666, 686
GsaI	CCCAGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	515
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	4 cut(s)	113, 369, 521, 668
HapII	CCGG	4 cut(s)	132, 156, 485, 693
HgaI	GACGC	2 cut(s)	547, 683
HhaI	GCGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	3 cut(s)	139, 710, 727
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HincII	GTYRAC	2 cut(s)	181, 436
HindII	GTYRAC	2 cut(s)	181, 436
HindIII	AAGCTT	2 cut(s)	212, 446
HinfI	GANTC	5 cut(s)	70, 128, 186, 296, 440
HpaII	CCGG	4 cut(s)	132, 156, 485, 693
HphI	GGTGA	2 cut(s)	42, 778
Hpy166II	GTNNAC	2 cut(s)	181, 436
Hpy188I	TCNGA	4 cut(s)	219, 289, 563, 758
Hpy188III	TCNNGA	3 cut(s)	311, 385, 640
Hpy8I	GTNNAC	2 cut(s)	181, 436
HpyAV	CCTTC	1 cut(s)	655
HpyCH4III	ACNGT	2 cut(s)	736, 766
HpyCH4IV	ACGT	3 cut(s)	59, 239, 579
HpyCH4V	TGCA	3 cut(s)	429, 685, 746
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 173, 454, 481, 674
HpyF3I	CTNAG	1 cut(s)	569
HpySE526I	ACGT	3 cut(s)	59, 239, 579
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	139, 710, 727
HspAI	GCGC	1 cut(s)	330
KasI	GGCGCC	1 cut(s)	329
Kzo9I	GATC	3 cut(s)	313, 343, 377
LmnI	GCTCC	4 cut(s)	164, 534, 703, 751
Lsp1109I	GCAGC	2 cut(s)	480, 697
LweI	GCATC	2 cut(s)	438, 471
MaeII	ACGT	3 cut(s)	59, 239, 579
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	3 cut(s)	315, 345, 379
MboI	GATC	3 cut(s)	313, 343, 377
MboII	GAAGA	2 cut(s)	103, 406
MflI	RGATCY	1 cut(s)	377
MhlI	GDGCHC	1 cut(s)	756
MluCI	AATT	6 cut(s)	276, 355, 419, 492, 512, 616
Mly113I	GGCGCC	1 cut(s)	330
MlyI	GAGTC	2 cut(s)	137, 449
MmeI	TCCRAC	2 cut(s)	267, 541
MspA1I	CMGCKG	1 cut(s)	471
MspI	CCGG	4 cut(s)	132, 156, 485, 693
MspR9I	CCNGG	4 cut(s)	80, 293, 533, 719
MvaI	CCWGG	4 cut(s)	80, 293, 533, 719
MvnI	CGCG	2 cut(s)	551, 677
MwoI	GCNNNNNNNGC	5 cut(s)	110, 173, 454, 481, 674
NarI	GGCGCC	1 cut(s)	330
NdeII	GATC	3 cut(s)	313, 343, 377
NlaIII	CATG	3 cut(s)	139, 710, 727
NlaIV	GGNNCC	4 cut(s)	154, 160, 331, 379
NmeAIII	GCCGAG	2 cut(s)	129, 395
NmuCI	GTSAC	1 cut(s)	601
PcsI	WCGNNNNNNNCGW	4 cut(s)	330, 333, 429, 555
PfeI	GAWTC	3 cut(s)	70, 186, 296
PflFI	GACNNNGTC	1 cut(s)	338
PfoI	TCCNGGA	2 cut(s)	531, 717
PkrI	GCNGC	4 cut(s)	103, 470, 667, 687
PleI	GAGTC	2 cut(s)	136, 448
PluTI	GGCGCC	1 cut(s)	333
PpsI	GAGTC	2 cut(s)	136, 448
PshAI	GACNNNNGTC	1 cut(s)	578
Psp124BI	GAGCTC	1 cut(s)	756
Psp6I	CCWGG	4 cut(s)	78, 291, 531, 717
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	4 cut(s)	78, 291, 531, 717
PspN4I	GGNNCC	4 cut(s)	154, 160, 331, 379
PspPI	GGNCC	3 cut(s)	139, 289, 367
PsuI	RGATCY	1 cut(s)	377
PsyI	GACNNNGTC	1 cut(s)	338
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
SacI	GAGCTC	1 cut(s)	756
SalI	GTCGAC	2 cut(s)	179, 434
SatI	GCNGC	4 cut(s)	102, 469, 666, 686
Sau3AI	GATC	3 cut(s)	313, 343, 377
Sau96I	GGNCC	3 cut(s)	139, 289, 367
SchI	GAGTC	2 cut(s)	137, 449
ScrFI	CCNGG	4 cut(s)	80, 293, 533, 719
SduI	GDGCHC	1 cut(s)	756
SfaNI	GCATC	2 cut(s)	438, 471
SfoI	GGCGCC	1 cut(s)	331
SgrDI	CGTCGACG	1 cut(s)	434
SinI	GGWCC	2 cut(s)	139, 289
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
Sse9I	AATT	6 cut(s)	276, 355, 419, 492, 512, 616
SsiI	CCGC	5 cut(s)	102, 165, 471, 551, 665
SspDI	GGCGCC	1 cut(s)	329
SstI	GAGCTC	1 cut(s)	756
StyD4I	CCNGG	4 cut(s)	78, 291, 531, 717
TaaI	ACNGT	2 cut(s)	736, 766
TaiI	ACGT	3 cut(s)	62, 242, 582
TaqI	TCGA	8 cut(s)	117, 180, 242, 324, 342, 435, 443, 582
TaqII	GACCGA	2 cut(s)	134, 198
TasI	AATT	6 cut(s)	276, 355, 419, 492, 512, 616
TauI	GCSGC	2 cut(s)	104, 668
TfiI	GAWTC	3 cut(s)	70, 186, 296
TscAI	CASTG	1 cut(s)	739
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	2 cut(s)	468, 685
Tsp45I	GTSAC	1 cut(s)	601
TspGWI	ACGGA	2 cut(s)	270, 620
TspRI	CASTG	1 cut(s)	739
Tth111I	GACNNNGTC	1 cut(s)	338
VpaK11BI	GGWCC	2 cut(s)	139, 289
XapI	RAATTY	3 cut(s)	276, 419, 512
XcmI	CCANNNNNNNNNTGG	1 cut(s)	647
XmiI	GTMKAC	2 cut(s)	180, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.