Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004024

Physical Location & Seq

Genomic Coordinates Forward (+)

1791659 .. 1792470

Gene Structure 812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGACACCACAAGGTTCATGCAGCTGGTTGAGGAGAAAAAGAAACGAGCTTTGGAGAAGAAAGAGACCCCGCTGAAATGGGAGCAGAAACTAGAAGCTGCTGCTAAGGCAAAAGCTGATGCAGAAGCCAAGGAGAGGAAGTTGAAATCTTCGAAGCATAAGATATCTGTGTCACAGTCTGATAGCGATAGTGACACTGGCAGAAGTGATGAGAGAAGAAAGTCAATTAAAATAACTCACAAGAAGCGCTCTCACTCTGGTGCAAGTGACAGTGAAGTGAGGAAGGAGAAGAAATCCAAGCGAAAGCTAAAGAAACATTCCTCAGGCTCAAGTGATGATAGCAGTGATGAGTATGAGAGTGATTACGAAGAAGATAGGAAGAGGAAGAAGAGAAGCCACAAAAAGCACAGGCATCATGATTCTGGATCAGATTGTGGTCCCGATTCTTCCAGTGATGATGATAGTGATACGGTGAAGAGAAGTCATTCGAGGCACCACAAGCGCCATCAGAGGTCAAGACTCAGAATCTTCTGGTTCTCATATCTAGTTACGAGGATGGTGAGGTTAGAAGGAAAAGGCATGCAAAACACCATCCACCTCATAGGCGATCACGATCGCGTTGCATCGATTCGAGATCTTCGGAGTCTGATTCCCAGAAACGTGACAGAAGGAGCAGATCTCTGGGGAAGTCGTCGGATGACAACCGTGATGAGGCTGACAAACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

28.12

Weight (kDa)

10.04

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01100 AT2G01100 AT2G01100
fragaria_vesca	FvH4_4g26261 FvH4_4g26261 FvH4_4g26261 FvH4_4g26263
malus_domestica	MD13G1031200.v1.1 MD16G1033400.v1.1
prunus_persica	Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1 Prupe.1G320900_v2.0.a1
pyrus_communis	pycom13g02730 pycom16g02800
rosa_chinensis	RchiOBHm_Chr2g0167881 RchiOBHm_Chr2g0167891 RchiOBHm_Chr4g0433871
rosa_laevigata	RLG00000006721 RLG00000011334 RLG00000017078
rosa_multiflora	Rmu_sc0000352.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375270
rosa_rugosa	Rorug04G0272000 Rorug04G0272000 Rorug04G0272000
rosa_samantha	Rh2BG014400 Rh4AG326700 Rh4DG330900 Rh5DG507000 Rh6AG509600 Rh7BG051000 Rh7CG171900
rosa_wichuraiana	Rw4G028320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	492
AccII	CGCG	1 cut(s)	618
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	433
AfeI	AGCGCT	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	135, 711
AgsI	TTSAA	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AleI	CACNNNNGTG	1 cut(s)	258
AluBI	AGCT	5 cut(s)	25, 50, 98, 116, 307
AluI	AGCT	5 cut(s)	25, 50, 98, 116, 307
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	433
Aor51HI	AGCGCT	1 cut(s)	248
ApeKI	GCWGC	3 cut(s)	22, 98, 101
Asp700I	GAANNNNTTC	1 cut(s)	484
AspLEI	GCGC	2 cut(s)	249, 504
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	2 cut(s)	484, 571
AsuII	TTCGAA	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	437
AxyI	CCTNAGG	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	492
BbvI	GCAGC	3 cut(s)	34, 85, 88
BccI	CCATC	3 cut(s)	513, 550, 599
BcgI	CGANNNNNNTGC	2 cut(s)	602, 636
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	92, 545
BfoI	RGCGCY	2 cut(s)	250, 505
BglII	AGATCT	2 cut(s)	634, 676
BisI	GCNGC	3 cut(s)	23, 99, 102
BlsI	GCNGC	3 cut(s)	24, 100, 103
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	2 cut(s)	439, 494
BmsI	GCATC	3 cut(s)	109, 421, 632
BplI	GAGNNNNNCTC	2 cut(s)	663, 695
Bpu10I	CCTNAGC	1 cut(s)	105
Bpu14I	TTCGAA	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	313
Bsa29I	ATCGAT	1 cut(s)	626
BsaBI	GATNNNNATC	1 cut(s)	612
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 711
Bse1I	ACTGG	2 cut(s)	202, 450
Bse21I	CCTNAGG	1 cut(s)	322
Bse8I	GATNNNNATC	1 cut(s)	612
BseCI	ATCGAT	1 cut(s)	626
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	3 cut(s)	561, 591, 702
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	2 cut(s)	135, 711
BseMII	CTCAG	2 cut(s)	336, 535
BseNI	ACTGG	2 cut(s)	202, 450
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	3 cut(s)	34, 85, 88
Bsh1236I	CGCG	1 cut(s)	618
Bsh1285I	CGRYCG	1 cut(s)	616
BshNI	GGYRCC	1 cut(s)	492
BshVI	ATCGAT	1 cut(s)	626
BsiEI	CGRYCG	1 cut(s)	616
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	2 cut(s)	135, 711
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	423
Bso31I	GGTCTC	1 cut(s)	59
Bsp119I	TTCGAA	1 cut(s)	152
Bsp143I	GATC	5 cut(s)	425, 607, 613, 634, 676
BspACI	CCGC	1 cut(s)	71
BspCNI	CTCAG	2 cut(s)	335, 534
BspDI	ATCGAT	1 cut(s)	626
BspFNI	CGCG	1 cut(s)	618
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	439, 494
BspPI	GGATC	1 cut(s)	433
BspT104I	TTCGAA	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	492
BspTNI	GGTCTC	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	202, 450
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	5 cut(s)	425, 607, 613, 634, 676
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	5 cut(s)	177, 272, 472, 706, 725
Bst6I	CTCTTC	3 cut(s)	374, 383, 470
BstBI	TTCGAA	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	581
BstDEI	CTNAG	3 cut(s)	105, 322, 521
BstF5I	GGATG	3 cut(s)	561, 591, 702
BstFNI	CGCG	1 cut(s)	618
BstH2I	RGCGCY	2 cut(s)	250, 505
BstHHI	GCGC	2 cut(s)	249, 504
BstKTI	GATC	5 cut(s)	428, 610, 616, 637, 679
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	5 cut(s)	425, 607, 613, 634, 676
BstMCI	CGRYCG	1 cut(s)	616
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 499
BstNSI	RCATGY	1 cut(s)	583
BstUI	CGCG	1 cut(s)	618
BstV1I	GCAGC	3 cut(s)	34, 85, 88
BstX2I	RGATCY	2 cut(s)	634, 676
BstYI	RGATCY	2 cut(s)	634, 676
Bsu15I	ATCGAT	1 cut(s)	626
Bsu36I	CCTNAGG	1 cut(s)	322
BsuTUI	ATCGAT	1 cut(s)	626
BtsCI	GGATG	3 cut(s)	561, 591, 702
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	4 cut(s)	195, 277, 349, 457
Cac8I	GCNNGC	1 cut(s)	581
CciI	TCATGA	1 cut(s)	415
CfoI	GCGC	2 cut(s)	249, 504
Cfr13I	GGNCC	1 cut(s)	437
ClaI	ATCGAT	1 cut(s)	626
CviAII	CATG	3 cut(s)	19, 416, 580
CviJI	RGCY	9 cut(s)	25, 50, 98, 116, 128, 307, 327, 396, 715
CviKI_1	RGCY	9 cut(s)	25, 50, 98, 116, 128, 307, 327, 396, 715
DdeI	CTNAG	3 cut(s)	105, 322, 521
DpnI	GATC	5 cut(s)	427, 609, 615, 636, 678
DpnII	GATC	5 cut(s)	425, 607, 613, 634, 676
Eam1104I	CTCTTC	3 cut(s)	374, 383, 470
EarI	CTCTTC	3 cut(s)	374, 383, 470
Eco130I	CCWWGG	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	59
Eco32I	GATATC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	437
Eco47III	AGCGCT	1 cut(s)	248
Eco81I	CCTNAGG	1 cut(s)	322
EcoRV	GATATC	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	3 cut(s)	22, 419, 583
FaiI	YATR	7 cut(s)	20, 159, 354, 417, 541, 581, 602
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	3 cut(s)	18, 415, 579
FauI	CCCGC	1 cut(s)	78
Fnu4HI	GCNGC	3 cut(s)	23, 99, 102
FokI	GGATG	3 cut(s)	568, 578, 709
Fsp4HI	GCNGC	3 cut(s)	23, 99, 102
FspBI	CTAG	2 cut(s)	92, 545
GlaI	GCGC	2 cut(s)	248, 503
GluI	GCNGC	3 cut(s)	23, 99, 102
HaeII	RGCGCY	2 cut(s)	250, 505
HhaI	GCGC	2 cut(s)	249, 504
Hin1II	CATG	3 cut(s)	22, 419, 583
Hin6I	GCGC	2 cut(s)	247, 502
HinP1I	GCGC	2 cut(s)	247, 502
HinfI	GANTC	7 cut(s)	419, 443, 519, 525, 628, 643, 649
HphI	GGTGA	2 cut(s)	484, 571
Hpy188I	TCNGA	7 cut(s)	181, 430, 510, 524, 642, 648, 696
Hpy188III	TCNNGA	6 cut(s)	416, 423, 440, 516, 611, 632
Hpy99I	CGWCG	1 cut(s)	696
HpyAV	CCTTC	3 cut(s)	277, 563, 662
HpyCH4III	ACNGT	5 cut(s)	177, 272, 472, 706, 725
HpyCH4IV	ACGT	1 cut(s)	660
HpyCH4V	TGCA	5 cut(s)	22, 122, 263, 583, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 499
HpyF3I	CTNAG	3 cut(s)	105, 322, 521
HpySE526I	ACGT	1 cut(s)	660
Hsp92II	CATG	3 cut(s)	22, 419, 583
HspAI	GCGC	2 cut(s)	247, 502
Kzo9I	GATC	5 cut(s)	425, 607, 613, 634, 676
LmnI	GCTCC	2 cut(s)	82, 671
Lsp1109I	GCAGC	3 cut(s)	34, 85, 88
LweI	GCATC	3 cut(s)	109, 421, 632
MaeI	CTAG	2 cut(s)	92, 545
MaeII	ACGT	1 cut(s)	660
MaeIII	GTNAC	5 cut(s)	171, 191, 266, 547, 661
MalI	GATC	5 cut(s)	427, 609, 615, 636, 678
MboI	GATC	5 cut(s)	425, 607, 613, 634, 676
MflI	RGATCY	2 cut(s)	634, 676
MluCI	AATT	1 cut(s)	225
MlyI	GAGTC	2 cut(s)	513, 652
MmeI	TCCRAC	1 cut(s)	674
MroXI	GAANNNNTTC	1 cut(s)	484
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	2 cut(s)	25, 73
MvnI	CGCG	1 cut(s)	618
MwoI	GCNNNNNNNGC	2 cut(s)	107, 499
NdeII	GATC	5 cut(s)	425, 607, 613, 634, 676
NlaIII	CATG	3 cut(s)	22, 419, 583
NlaIV	GGNNCC	2 cut(s)	439, 494
NmuCI	GTSAC	4 cut(s)	171, 191, 266, 661
NspI	RCATGY	1 cut(s)	583
NspV	TTCGAA	1 cut(s)	152
OliI	CACNNNNGTG	1 cut(s)	258
PaeI	GCATGC	1 cut(s)	583
PagI	TCATGA	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	484
PfeI	GAWTC	5 cut(s)	419, 443, 525, 628, 649
PkrI	GCNGC	3 cut(s)	24, 100, 103
Ple19I	CGATCG	1 cut(s)	616
PleI	GAGTC	2 cut(s)	513, 651
PpsI	GAGTC	2 cut(s)	513, 651
PspN4I	GGNNCC	2 cut(s)	439, 494
PspPI	GGNCC	1 cut(s)	437
PsuI	RGATCY	2 cut(s)	634, 676
PvuI	CGATCG	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	3 cut(s)	23, 99, 102
Sau3AI	GATC	5 cut(s)	425, 607, 613, 634, 676
Sau96I	GGNCC	1 cut(s)	437
SchI	GAGTC	2 cut(s)	513, 652
SfaNI	GCATC	3 cut(s)	109, 421, 632
SfuI	TTCGAA	1 cut(s)	152
SinI	GGWCC	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
SphI	GCATGC	1 cut(s)	583
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	2 cut(s)	92, 545
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	5 cut(s)	177, 272, 472, 706, 725
TaiI	ACGT	1 cut(s)	663
TaqI	TCGA	4 cut(s)	152, 488, 626, 631
TasI	AATT	1 cut(s)	225
TfiI	GAWTC	5 cut(s)	419, 443, 525, 628, 649
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	4 cut(s)	202, 277, 349, 457
TseFI	GTSAC	4 cut(s)	171, 191, 266, 661
TseI	GCWGC	3 cut(s)	22, 98, 101
Tsp45I	GTSAC	4 cut(s)	171, 191, 266, 661
TspDTI	ATGAA	1 cut(s)	7
TspRI	CASTG	4 cut(s)	202, 277, 349, 457
VpaK11BI	GGWCC	1 cut(s)	437
XceI	RCATGY	1 cut(s)	583
XmnI	GAANNNNTTC	1 cut(s)	484
XspI	CTAG	2 cut(s)	92, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.