pycom16g04470

Lysine-rich arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0015270
Physical Location & Seq
Reverse (-)
2835431 .. 2836377
947 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 813 bp
ATGGCTTCGATTTTGCTAGCTTTCGTTTTGTATTCTCTCAGCTTTCAAGTAATCTTTACCGGTGCACAGACACCGGCAGCCGCACCCTCTACTTTGCCGGCCAAAGCACCGCCACCCACTACCACACCTGCTGCACAGGCTACTTTGCCGACTAAAACCCCACCACCTTCTACTGCACCAACTGCAGTAACACAACCGCCTGTAAATGCAGTGACCCCACCAACTACCACACCTGCATCACCTTCCCCTAAGGTAACACCATCCAAAAGCCCAACAGCCTCACCCCCGCTACCCCAAAGTCCACCTGTGTCAACTCCATCACAGCCACCAAAACTGCCGCCATCACCACCTGTTTCGTCACCAGCATTGCCACCTCCTGTAGCGGCACCACGTGTATCTCCAACACCAGTTCAAGCCCCAGCTCCTGTTAAATCAACACCAGCACCAGCACCAGCTATGGTAGCACCAGTGCCCTCACCATCAAAAGCAACCCCAGTACCAGCGCCAGCACCGGTTATTGTGCCACCAGCTTCAGAACCAGTGCAAGCACCATCACCTGCGCCTGCTCCACCCAAACACAAGAGGAAGCACAAGCACAAGCATCATCATCATCATGCACCAGCACCTGCACCTACTGTACAAAGCCCCCCAGCACCACCTACAGTAACAGATACAGAGGACAACAATACACCCGCACCATCACCAAGTTTGGATTTGAATGGAGGATATGCACTACACCAGAAAGGAGGGATATCAGGATTGTGGGTTACGACCGGATTAGCAATCACTATACTGCTGGCAATGACAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

27.02

Weight (kDa)

10.17

Isoelectric Point (pI)

99.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68725
fragaria_vesca FvH4_4g28430
malus_domestica MD13G1050000.v1.1
prunus_persica Prupe.1G301700_v2.0.a1
pyrus_communis pycom13g04430 pycom16g04470
rosa_chinensis RchiOBHm_Chr4g0436381
rosa_laevigata RLG00000006523
rosa_multiflora Rmu_sc0007205.1_g000001
rosa_roxburghii Rroxscaffold_5G00377550
rosa_rugosa Rorug04G0293400
rosa_samantha Rh4AG347700 Rh4BG356500 Rh4CG371100 Rh4DG350200
rosa_wichuraiana Rw4G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 4 cut(s) 136, 241, 565, 634
Acc36I ACCTGC 4 cut(s) 136, 241, 565, 634
AccB1I GGYRCC 1 cut(s) 385
AciI CCGC 7 cut(s) 81, 110, 197, 287, 338, 383, 693
AcoI YGGCCR 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 516
AcvI CACGTG 1 cut(s) 392
AdeI CACNNNGTG 1 cut(s) 392
AfaI GTAC 2 cut(s) 498, 639
AflIII ACRYGT 1 cut(s) 391
AgeI ACCGGT 2 cut(s) 59, 511
AgsI TTSAA 3 cut(s) 47, 413, 718
AluBI AGCT 6 cut(s) 20, 42, 422, 455, 530, 810
AluI AGCT 6 cut(s) 20, 42, 422, 455, 530, 810
Alw21I GWGCWC 1 cut(s) 67
Alw44I GTGCAC 1 cut(s) 63
AlwNI CAGNNNCTG 2 cut(s) 425, 626
AoxI GGCC 1 cut(s) 99
ApaLI GTGCAC 1 cut(s) 63
ApeKI GCWGC 2 cut(s) 77, 131
AsiGI ACCGGT 2 cut(s) 59, 511
AspLEI GCGC 2 cut(s) 505, 562
AsuHPI GGTGA 7 cut(s) 231, 273, 336, 351, 468, 546, 693
AsuNHI GCTAGC 1 cut(s) 16
AxyI CCTNAGG 1 cut(s) 249
BaeGI GKGCMC 2 cut(s) 67, 474
BaeI ACNNNNGTAYC 2 cut(s) 480, 513
BanI GGYRCC 1 cut(s) 385
BbrPI CACGTG 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 2 cut(s) 89, 118
BccI CCATC 6 cut(s) 268, 325, 349, 487, 559, 706
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 3 cut(s) 183, 378, 660
BfoI RGCGCY 1 cut(s) 506
BfuAI ACCTGC 4 cut(s) 136, 241, 565, 634
BisI GCNGC 5 cut(s) 78, 81, 132, 338, 384
BlsI GCNGC 5 cut(s) 79, 82, 133, 339, 385
BmiI GGNNCC 1 cut(s) 387
BmrI ACTGGG 1 cut(s) 488
BmsI GCATC 2 cut(s) 245, 610
BmtI GCTAGC 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 488
BsaAI YACGTR 1 cut(s) 392
BsaWI WCCGGW 3 cut(s) 59, 511, 773
Bse118I RCCGGY 4 cut(s) 59, 73, 97, 511
Bse1I ACTGG 4 cut(s) 407, 467, 494, 539
Bse21I CCTNAGG 1 cut(s) 249
Bse3DI GCAATG 2 cut(s) 365, 807
BseGI GGATG 1 cut(s) 260
BseMI GCAATG 2 cut(s) 365, 807
BseMII CTCAG 1 cut(s) 52
BseNI ACTGG 4 cut(s) 407, 467, 494, 539
BseSI GKGCMC 2 cut(s) 67, 474
BseXI GCAGC 2 cut(s) 89, 118
BseYI CCCAGC 2 cut(s) 418, 649
BsgI GTGCAG 3 cut(s) 117, 159, 612
Bsh1285I CGRYCG 1 cut(s) 774
BshFI GGCC 1 cut(s) 101
BshNI GGYRCC 1 cut(s) 385
BshTI ACCGGT 2 cut(s) 59, 511
BsiEI CGRYCG 1 cut(s) 774
BsiHKAI GWGCWC 1 cut(s) 67
BsiSI CCGG 5 cut(s) 60, 74, 98, 512, 774
BsnI GGCC 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 67, 474
Bsp1407I TGTACA 1 cut(s) 637
BspACI CCGC 7 cut(s) 81, 110, 197, 287, 338, 383, 693
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 387
BspMAI CTGCAG 1 cut(s) 187
BspMI ACCTGC 4 cut(s) 136, 241, 565, 634
BspOI GCTAGC 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 385
BsrDI GCAATG 2 cut(s) 365, 807
BsrFI RCCGGY 4 cut(s) 59, 73, 97, 511
BsrGI TGTACA 1 cut(s) 637
BsrI ACTGG 4 cut(s) 407, 467, 494, 539
BssAI RCCGGY 4 cut(s) 59, 73, 97, 511
Bst4CI ACNGT 2 cut(s) 637, 664
BstAPI GCANNNNNTGC 1 cut(s) 182
BstAUI TGTACA 1 cut(s) 637
BstBAI YACGTR 1 cut(s) 392
BstC8I GCNNGC 6 cut(s) 18, 99, 507, 546, 564, 798
BstDEI CTNAG 2 cut(s) 38, 249
BstF5I GGATG 1 cut(s) 260
BstH2I RGCGCY 1 cut(s) 506
BstHHI GCGC 2 cut(s) 505, 562
BstMCI CGRYCG 1 cut(s) 774
BstMWI GCNNNNNNNGC 3 cut(s) 137, 182, 461
BstSFI CTRYAG 3 cut(s) 183, 378, 660
BstSLI GKGCMC 2 cut(s) 67, 474
BstV1I GCAGC 2 cut(s) 89, 118
Bsu36I CCTNAGG 1 cut(s) 249
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 260
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 3 cut(s) 216, 474, 546
BveI ACCTGC 4 cut(s) 136, 241, 565, 634
Cac8I GCNNGC 6 cut(s) 18, 99, 507, 546, 564, 798
CaiI CAGNNNCTG 2 cut(s) 425, 626
CfoI GCGC 2 cut(s) 505, 562
Cfr10I RCCGGY 4 cut(s) 59, 73, 97, 511
Csp6I GTAC 2 cut(s) 497, 638
CspAI ACCGGT 2 cut(s) 59, 511
CviAII CATG 1 cut(s) 614
CviQI GTAC 2 cut(s) 497, 638
DdeI CTNAG 2 cut(s) 38, 249
DraIII CACNNNGTG 1 cut(s) 392
EaeI YGGCCR 1 cut(s) 99
Eco32I GATATC 1 cut(s) 753
Eco57I CTGAAG 1 cut(s) 516
Eco72I CACGTG 1 cut(s) 392
Eco81I CCTNAGG 1 cut(s) 249
EcoRV GATATC 1 cut(s) 753
FaeI CATG 1 cut(s) 617
FaiI YATR 4 cut(s) 458, 615, 729, 791
FatI CATG 1 cut(s) 613
FauI CCCGC 2 cut(s) 294, 700
Fnu4HI GCNGC 5 cut(s) 78, 81, 132, 338, 384
FokI GGATG 1 cut(s) 247
Fsp4HI GCNGC 5 cut(s) 78, 81, 132, 338, 384
FspBI CTAG 1 cut(s) 17
GlaI GCGC 2 cut(s) 504, 561
GluI GCNGC 5 cut(s) 78, 81, 132, 338, 384
GsaI CCCAGC 2 cut(s) 422, 653
HaeII RGCGCY 1 cut(s) 506
HaeIII GGCC 1 cut(s) 101
HapII CCGG 5 cut(s) 60, 74, 98, 512, 774
HhaI GCGC 2 cut(s) 505, 562
Hin1II CATG 1 cut(s) 617
Hin6I GCGC 2 cut(s) 503, 560
HinP1I GCGC 2 cut(s) 503, 560
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HpaII CCGG 5 cut(s) 60, 74, 98, 512, 774
HphI GGTGA 7 cut(s) 231, 273, 336, 351, 468, 546, 693
Hpy166II GTNNAC 3 cut(s) 65, 302, 312
Hpy188I TCNGA 1 cut(s) 535
Hpy188III TCNNGA 1 cut(s) 756
Hpy8I GTNNAC 3 cut(s) 65, 302, 312
HpyAV CCTTC 2 cut(s) 177, 252
HpyCH4III ACNGT 2 cut(s) 637, 664
HpyCH4IV ACGT 1 cut(s) 391
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 182, 461
HpyF3I CTNAG 2 cut(s) 38, 249
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 1 cut(s) 617
HspAI GCGC 2 cut(s) 503, 560
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
LmnI GCTCC 2 cut(s) 427, 571
Lsp1109I GCAGC 2 cut(s) 89, 118
LweI GCATC 2 cut(s) 245, 610
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 6 cut(s) 187, 211, 253, 357, 664, 766
MhlI GDGCHC 2 cut(s) 67, 474
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 8 cut(s) 97, 289, 384, 484, 576, 670, 716, 740
MroNI GCCGGC 1 cut(s) 97
MseI TTAA 1 cut(s) 429
MslI CAYNNNNRTG 1 cut(s) 612
MspI CCGG 5 cut(s) 60, 74, 98, 512, 774
MwoI GCNNNNNNNGC 3 cut(s) 137, 182, 461
NaeI GCCGGC 1 cut(s) 99
NgoMIV GCCGGC 1 cut(s) 97
NheI GCTAGC 1 cut(s) 16
NlaIII CATG 1 cut(s) 617
NlaIV GGNNCC 1 cut(s) 387
NmuCI GTSAC 2 cut(s) 211, 357
PaqCI CACCTGC 4 cut(s) 136, 241, 565, 634
PdiI GCCGGC 1 cut(s) 99
PinAI ACCGGT 2 cut(s) 59, 511
PkrI GCNGC 5 cut(s) 79, 82, 133, 339, 385
PmaCI CACGTG 1 cut(s) 392
PmlI CACGTG 1 cut(s) 392
Ppu21I YACGTR 1 cut(s) 392
PspCI CACGTG 1 cut(s) 392
PspFI CCCAGC 2 cut(s) 418, 649
PspN4I GGNNCC 1 cut(s) 387
PstI CTGCAG 1 cut(s) 187
PstNI CAGNNNCTG 2 cut(s) 425, 626
RsaI GTAC 2 cut(s) 498, 639
RsaNI GTAC 2 cut(s) 497, 638
RseI CAYNNNNRTG 1 cut(s) 612
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 5 cut(s) 78, 81, 132, 338, 384
SduI GDGCHC 2 cut(s) 67, 474
SfaNI GCATC 2 cut(s) 245, 610
SfcI CTRYAG 3 cut(s) 183, 378, 660
SmiMI CAYNNNNRTG 1 cut(s) 612
SsiI CCGC 7 cut(s) 81, 110, 197, 287, 338, 383, 693
SspMI CTAG 1 cut(s) 17
TaaI ACNGT 2 cut(s) 637, 664
TaiI ACGT 1 cut(s) 394
TaqI TCGA 1 cut(s) 8
TatI WGTACW 1 cut(s) 637
TauI GCSGC 3 cut(s) 83, 340, 386
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 3 cut(s) 216, 474, 546
TseFI GTSAC 2 cut(s) 211, 357
TseI GCWGC 2 cut(s) 77, 131
Tsp45I GTSAC 2 cut(s) 211, 357
TspRI CASTG 3 cut(s) 216, 474, 546
VneI GTGCAC 1 cut(s) 63
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.