Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0012825

Physical Location & Seq

Genomic Coordinates Reverse (-)

3432424 .. 3435848

Gene Structure 3425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3312 bp

ATGAGATGCCATCTGCTTTTCAAAACCGCGCTTTTTCTCAAAGCCTTCTGCTTATTGAGTTGCGTTTCTGGGGAAGCGCTGGTTTCCGAGAAGTCGATTTTGCTCGAGATCAAGAGCTCGTTTTCCGACCCGCATGGGGTTCTCTCCGGCTGGATATCCAACAGCTTCGATCACCCCTGCTCCTGGGTCGGGGTCTCCTGCAACGAAAAATCCAGGGTCGTTTCGCTCAGTCTCGGCGGCAGCAGTGGCAAAGGAGGTAATTTTCGAGCTCTCTCTTGCTCTCAGAGTTTGAAATTTCCATTTCCGTTTGATGAGTTCGCTGTTTGGAGGAAAAGTTTAGTTATTAGTGGAAAATTGGGTGGAAAGGTTTCGCCTTGGGTGGGAAAGCTCACTGAGCTTAGAGTTTTATCGCTGCCATTTAATGAACTTGGTGGCGAAATTCCGAAGGAAATTTGGGGGTTGGAGAAGCTTGAAGTGATCGATCTTGAGGGAAATTTGTTGAACGGAAGTTTGCCAACCCGGTTTTTGGGTTTGAGGAGGTTGAGGGTTTTGAACCTTGGGTTTAATAGAATTGGTGGGGAGATTCCTTATTCGCTTTCGAGATGTGTGGATTTGGAGGTGTTGAATTTGGTAGGCAATGAAGTGAGTGGAACCATTCCTGGGTTTGTTGGTAGTTTTGCAAAGTTGCAGGGACTTTATTTGGCTCAAAATAGGTTAAATGGGTCTATACCAGCCACATTTGGAAGCTTTTGCCGAAATCTTGAACATCTTGATGTGTCGGGGAATTTCCTTGTTGGGAAGATTCCTGGTAGTTTGGGGAATTGTCGGAGTTTACGGACTCTTTTGTTGTTTTCAAATATATTGGATGGTGGCATTCCTCTAGAACTTGGTTGGATTCGAATGCTTGAAGTTCTAGATGTTTCAAGAAATAGCCTTAGCGGGCCAATCCCTGCTGAGCTTGGACAATGTGTCAATTTATCTGTTCTTGTCCTGTCGAATCTTTTTAATCCATTGACAACCAATCAGAATACAAAAGGAGATACATCAATTGATTTATCTAGTGGTTTGGACGATGATTACAATTATTACGAAGGCTCCGTTCCAGAGGAAATTACAACCCTTCCAAATTTGAAAATAGTTTGGGCTCCAAGGGCAACCCTTGAGGGAAAGCTTCCGAGCAATTGGGGTGGTTGTGAGAACTTGGAAATGTTGAACTTAGCTCAGAACCTTTTCAGCGGAGAAGTCACTGGAGTATTTGAAAGATGCAAGAAGCTGCATTATCTAAATTTGGGATCAAATAAGCTGAGTGGGAATATTGATGAGAAGTTTCCAGTTCCATGTATGACTGTTTTCAATGTCAGTGGAAACTTCATGTCTGGACCTGTGCCCGAGTTTCTGTACAGAGCGTGCCCCCAGGTGCTCCCAAATTCAGATCGTGTTCGAGTCAACAATCTATCATTTCCGTATCAAGTGCTCTTTACTTGCCAAACTCAGCTTGATAGCCATTTGCCTAGTTTCACTATGGTTCATGATTTTAGTGGTAACAACTTCACTGGTCCAATCCAACACCTCCCTCTTGCAACCGAGAGATTGCAGAAGCAGACTGTTTATGCATTTCTTGCTGGTGGCAACAAGCTTACTGGATCATTTCCTGAAAGCTTACTAGGAAAATGTGATGGATTAGATGGAATGATTATTGATGTCAGCGACAATAAGTTGTCAGGTCAAATTCCTTTTGGGATTGGTGTGATGTGCAGATCTCTTAGATTCATGGATGCCTCTGGCAATGTTTTATATGGGTCAATACCTTCAGATATTGGGGGTTTGGAATCTCTTGTCTTTCTTGACTTGAGCAGGAACCAGCTACAAGGTCAAATTCCCGCCAGTATCAGTCAGTTGAAGTATCTCAAGTATGTGGCCCTGGCTAACAACAACCTCACTGGTGCAATTCCTGCTAGCTTTGGGTGGTTGCACTCCCTTGAGGTGCTAAAACTGTCTTCTAATTCTCTTTCTGGTGATATTCCTCAAGGTCTTGTGAACTTGAAAAATTTAACTGTTTTTTTGCTCGACAACAATAAACTCTCTGGGCACATCCCTTCAGGCTTGACTAATCTGAAATCCCTATCTACATTCAATGCCTCCTTCAATAACCTGTCTGGTTCATTTCCATTGAACAATAGTGCAATGAACTGCAGCAGTGTCCTTGGGAATCCTTTCATTATTCCATGCCATGTTCCGCTAACTGCTCCATCTTCAGATCAGCCAGATAGGAGTGGGAGTTCACAACATAACCCTGATTCTACATCAGAAACTACTGGTGGTGATGATAATAGTGGATTAGGCTCAGTCGAGATCGCATCCATAGCATCTGCATCAGCTGTTGTTTTGGTTCTGCTCTCTCTCGTTATCCTTTTCTTTTATACGAGAAAATGGATACCAGATTCCAGGGTTCAGGGTTTTGAATATAAAGAAATGACTCTGTTTACAAACATTGGGGCTCCCTTGACATTTGAGATTATTGTTCAAGCAACAGGGAATTTTAATGGCAGCCACCACATTGGAAGCGGAGGATTTGGGGCCACTTACAAAGCCGAAATTGCTCCAGGAATCACTGTAGCTGTGAAAAGGCTAGCTGTTGGAAGGTTTCATGGTGTTCAACAGTTTCATGCTGAGATTAAAACCCTTGGCAGGATCGATCGGAGGCCTTTTAATTGGCAAATTCTCCACAAGATTGCTTTGCATATAGCCCATGCACTTGCTTATCTGCATGGCGAGTGTATTCCGCGTGTCCTTCACCGTGATGTCAAGCCAAGTAACATACTGTTGGATAATGAGTTCAATGCTTATTTGTCTGACTTTGGATTATCTAGGCTTTTGGGAACTTCAGAAACACACGTAACAACTGGTGTGGCAGGGACTTTTGGGTACGTAGCACCAGAGTATGCTATGACTTGCCATGTGTCTGAAAAGTCTGATGTTTACAGTTACGGTGTTATGCTGCTTGAATTGATGTCGCACAAAGAAGCATTGGACCCTTCGTTTTCGTCGCATGGCCATGGTTTCAACATTGTCTCTTGGGTGGACATGCTGTTAGAACAGGGTCGGGATGAGGAGGTCTTCATAGAAGGGCTATGGGATGCAGGACCCCAGAATGATCTAGTCGAGATGTTGAATCTGGCCGTCTCGTGCACGGTCAAGACCCTCACCTTTAGGCCAACAATGAAGCAAGTCGTCCAAAGATTAAAGCGGATCCAACCTGTTTCAAGGAAGCCGGATAATGAGCAAAGTATAGAGCTATCGATCATAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0001101 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009698 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009808 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009908 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010035 GO:0010073 GO:0010152 GO:0010154 GO:0016020 GO:0016043 GO:0019748 GO:0021700 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0042221 GO:0043933 GO:0044085 GO:0044237 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048508 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051260 GO:0051704 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0099402 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

1104

Amino Acids

120.14

Weight (kDa)

6.25

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	29 - 68	3.3e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	127 - 232	1.5e-07	Leucine-rich repeat region
LRR_8	PF13855	228 - 286	1.7e-06	Leucine rich repeat
LRR_8	PF13855	614 - 670	8e-07	Leucine rich repeat
LRR_14	PF23598	631 - 711	1.1e-07	Leucine-rich repeat region
LRR_8	PF13855	636 - 694	9e-09	Leucine rich repeat
Pkinase	PF00069	900 - 1079	3.7e-26	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	901 - 1081	5.6e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69270
fragaria_vesca	FvH4_4g29970
malus_domestica	MD13G1062000.v1.1 MD16G1060500.v1.1
prunus_persica	Prupe.1G287800_v2.0.a1
pyrus_communis	pycom13g05450 pycom16g05270
rosa_chinensis	RchiOBHm_Chr4g0438241
rosa_laevigata	RLG00000006378
rosa_multiflora	Rmu_sc0002682.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379330
rosa_rugosa	Rorug04G0308300
rosa_samantha	Rh4AG359300 Rh4BG370100 Rh4CG384300 Rh4DG365200
rosa_wichuraiana	Rw0G006390 Rw0G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	29, 2785
AclWI	GGATC	5 cut(s)	1300, 1651, 2699, 3244, 3257
AcoI	YGGCCR	2 cut(s)	3052, 3177
AcuI	CTGAAG	4 cut(s)	1794, 2082, 2238, 2868
AfaI	GTAC	2 cut(s)	1400, 2927
AfeI	AGCGCT	1 cut(s)	78
AfiI	CCNNNNNNNGG	7 cut(s)	136, 183, 189, 380, 526, 660, 2688
AflIII	ACRYGT	1 cut(s)	2893
AhdI	GACNNNNNGTC	1 cut(s)	968
AjnI	CCWGG	8 cut(s)	182, 212, 658, 805, 1413, 1920, 2444, 2602
AloI	GAACNNNNNNTCC	4 cut(s)	2263, 2295, 2819, 2851
Alw21I	GWGCWC	5 cut(s)	119, 271, 1422, 1476, 3191
Alw26I	GTCTC	4 cut(s)	199, 236, 3076, 3187
Alw44I	GTGCAC	1 cut(s)	3187
AlwI	GGATC	5 cut(s)	1300, 1651, 2699, 3244, 3257
Ama87I	CYCGRG	2 cut(s)	104, 1388
Aor51HI	AGCGCT	1 cut(s)	78
AoxI	GGCC	7 cut(s)	941, 1917, 2577, 2702, 3052, 3177, 3212
ApaLI	GTGCAC	1 cut(s)	3187
ApeKI	GCWGC	6 cut(s)	240, 412, 1273, 2193, 2547, 2998
Asp700I	GAANNNNTTC	3 cut(s)	367, 1229, 2213
AspLEI	GCGC	2 cut(s)	31, 79
AspS9I	GGNCC	7 cut(s)	941, 1379, 1556, 1918, 2577, 3031, 3143
AsuC2I	CCSGG	1 cut(s)	520
AsuHPI	GGTGA	5 cut(s)	164, 2027, 2333, 2786, 3196
AsuII	TTCGAA	1 cut(s)	898
AsuNHI	GCTAGC	2 cut(s)	1955, 2629
AvaI	CYCGRG	2 cut(s)	104, 1388
AvaII	GGWCC	4 cut(s)	1379, 1556, 3031, 3143
BaeGI	GKGCMC	4 cut(s)	1389, 1412, 2091, 3191
BalI	TGGCCA	1 cut(s)	3054
BamHI	GGATCC	1 cut(s)	3249
BanII	GRGCYC	4 cut(s)	119, 271, 1147, 2500
BauI	CACGAG	1 cut(s)	3184
BbsI	GAAGAC	2 cut(s)	1989, 3109
Bbv12I	GWGCWC	5 cut(s)	119, 271, 1422, 1476, 3191
BbvI	GCAGC	6 cut(s)	252, 399, 1260, 2205, 2559, 2985
BccI	CCATC	5 cut(s)	18, 860, 1670, 1679, 2257
BceAI	ACGGC	1 cut(s)	3164
BciT130I	CCWGG	8 cut(s)	184, 214, 660, 807, 1415, 1922, 2446, 2604
BciVI	GTATCC	1 cut(s)	2427
BcnI	CCSGG	1 cut(s)	520
BcoDI	GTCTC	4 cut(s)	199, 236, 3076, 3187
BfmI	CTRYAG	2 cut(s)	2191, 2613
BfoI	RGCGCY	1 cut(s)	80
BfuI	GTATCC	1 cut(s)	2427
BglII	AGATCT	1 cut(s)	1757
BisI	GCNGC	7 cut(s)	238, 241, 413, 1274, 2194, 2548, 2999
BlpI	GCTNAGC	1 cut(s)	954
BlsI	GCNGC	7 cut(s)	239, 242, 414, 1275, 2195, 2549, 3000
Bme1390I	CCNGG	9 cut(s)	184, 214, 520, 660, 807, 1415, 1922, 2446, 2604
Bme18I	GGWCC	4 cut(s)	1379, 1556, 3031, 3143
BmeRI	GACNNNNNGTC	1 cut(s)	968
BmeT110I	CYCGRG	2 cut(s)	104, 1388
BmgT120I	GGNCC	7 cut(s)	941, 1379, 1556, 1918, 2577, 3031, 3143
BmiI	GGNNCC	9 cut(s)	652, 1096, 1146, 1859, 2499, 2578, 3033, 3145, 3251
BmrFI	CCNGG	9 cut(s)	184, 214, 520, 660, 807, 1415, 1922, 2446, 2604
BmsI	GCATC	6 cut(s)	1253, 1765, 2366, 2375, 2381, 3127
BmtI	GCTAGC	2 cut(s)	1959, 2633
BpiI	GAAGAC	2 cut(s)	1989, 3109
BpmI	CTGGAG	2 cut(s)	1269, 2586
Bpu10I	CCTNAGC	1 cut(s)	935
Bpu1102I	GCTNAGC	1 cut(s)	954
Bpu14I	TTCGAA	1 cut(s)	898
BpuEI	CTTGAG	6 cut(s)	506, 1181, 1870, 1892, 2000, 2010
BpuMI	CCSGG	1 cut(s)	520
Bsa29I	ATCGAT	3 cut(s)	480, 2694, 3299
BsaAI	YACGTR	2 cut(s)	2896, 2929
BsaI	GGTCTC	1 cut(s)	199
BsaXI	ACNNNNNCTCC	8 cut(s)	164, 194, 319, 349, 1079, 1109, 2263, 2293
Bsc4I	CCNNNNNNNGG	7 cut(s)	136, 183, 189, 380, 526, 660, 2688
Bse1I	ACTGG	8 cut(s)	1252, 1331, 1558, 1645, 1884, 1945, 2320, 2908
Bse3DI	GCAATG	3 cut(s)	643, 1792, 2190
BseBI	CCWGG	8 cut(s)	184, 214, 660, 807, 1415, 1922, 2446, 2604
BseCI	ATCGAT	3 cut(s)	480, 2694, 3299
BseGI	GGATG	6 cut(s)	871, 1780, 2091, 2357, 3112, 3142
BseLI	CCNNNNNNNGG	7 cut(s)	136, 183, 189, 380, 526, 660, 2688
BseMI	GCAATG	3 cut(s)	643, 1792, 2190
BseMII	CTCAG	9 cut(s)	241, 296, 384, 945, 1235, 1295, 1505, 2358, 2661
BseNI	ACTGG	8 cut(s)	1252, 1331, 1558, 1645, 1884, 1945, 2320, 2908
BseRI	GAGGAG	2 cut(s)	550, 3125
BseSI	GKGCMC	4 cut(s)	1389, 1412, 2091, 3191
BseXI	GCAGC	6 cut(s)	252, 399, 1260, 2205, 2559, 2985
BsgI	GTGCAG	1 cut(s)	1774
Bsh1236I	CGCG	2 cut(s)	29, 2785
Bsh1285I	CGRYCG	1 cut(s)	2698
BshFI	GGCC	7 cut(s)	943, 1919, 2579, 2704, 3054, 3179, 3214
BshVI	ATCGAT	3 cut(s)	480, 2694, 3299
BsiEI	CGRYCG	1 cut(s)	2698
BsiHKAI	GWGCWC	5 cut(s)	119, 271, 1422, 1476, 3191
BsiHKCI	CYCGRG	2 cut(s)	104, 1388
BsiSI	CCGG	3 cut(s)	147, 520, 3272
BslFI	GGGAC	2 cut(s)	705, 2929
BslI	CCNNNNNNNGG	7 cut(s)	136, 183, 189, 380, 526, 660, 2688
BsmAI	GTCTC	4 cut(s)	199, 236, 3076, 3187
BsmBI	CGTCTC	1 cut(s)	3187
BsmFI	GGGAC	2 cut(s)	705, 2929
BsmI	GAATGC	2 cut(s)	873, 906
BsnI	GGCC	7 cut(s)	943, 1919, 2579, 2704, 3054, 3179, 3214
Bso31I	GGTCTC	1 cut(s)	199
BsoBI	CYCGRG	2 cut(s)	104, 1388
Bsp119I	TTCGAA	1 cut(s)	898
Bsp1407I	TGTACA	1 cut(s)	1398
Bsp1720I	GCTNAGC	1 cut(s)	954
Bsp19I	CCATGG	1 cut(s)	3055
BspANI	GGCC	7 cut(s)	943, 1919, 2579, 2704, 3054, 3179, 3214
BspCNI	CTCAG	9 cut(s)	240, 295, 385, 946, 1234, 1296, 1504, 2357, 2662
BspDI	ATCGAT	3 cut(s)	480, 2694, 3299
BspFNI	CGCG	2 cut(s)	29, 2785
BspHI	TCATGA	1 cut(s)	1528
BspLI	GGNNCC	9 cut(s)	652, 1096, 1146, 1859, 2499, 2578, 3033, 3145, 3251
BspMAI	CTGCAG	1 cut(s)	2195
BspOI	GCTAGC	2 cut(s)	1959, 2633
BspPI	GGATC	5 cut(s)	1300, 1651, 2699, 3244, 3257
BspT104I	TTCGAA	1 cut(s)	898
BspTNI	GGTCTC	1 cut(s)	199
BsrDI	GCAATG	3 cut(s)	643, 1792, 2190
BsrGI	TGTACA	1 cut(s)	1398
BsrI	ACTGG	8 cut(s)	1252, 1331, 1558, 1645, 1884, 1945, 2320, 2908
BssSI	CACGAG	1 cut(s)	3184
BssT1I	CCWWGG	6 cut(s)	374, 556, 1148, 2203, 2683, 3055
Bst2BI	CACGAG	1 cut(s)	3184
Bst2UI	CCWGG	8 cut(s)	184, 214, 660, 807, 1415, 1922, 2446, 2604
BstAPI	GCANNNNNTGC	2 cut(s)	1619, 1952
BstAUI	TGTACA	1 cut(s)	1398
BstBAI	YACGTR	2 cut(s)	2896, 2929
BstBI	TTCGAA	1 cut(s)	898
BstC8I	GCNNGC	4 cut(s)	941, 1408, 1957, 2631
BstDSI	CCRYGG	1 cut(s)	3055
BstF5I	GGATG	6 cut(s)	871, 1780, 2091, 2357, 3112, 3142
BstFNI	CGCG	2 cut(s)	29, 2785
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	31, 79
BstMAI	GTCTC	4 cut(s)	199, 236, 3076, 3187
BstMCI	CGRYCG	1 cut(s)	2698
BstMWI	GCNNNNNNNGC	7 cut(s)	246, 394, 1151, 1619, 1952, 2363, 2597
BstNI	CCWGG	8 cut(s)	184, 214, 660, 807, 1415, 1922, 2446, 2604
BstNSI	RCATGY	1 cut(s)	3088
BstSCI	CCNGG	9 cut(s)	182, 212, 518, 658, 805, 1413, 1920, 2444, 2602
BstSFI	CTRYAG	2 cut(s)	2191, 2613
BstSLI	GKGCMC	4 cut(s)	1389, 1412, 2091, 3191
BstSNI	TACGTA	1 cut(s)	2929
BstUI	CGCG	2 cut(s)	29, 2785
BstV1I	GCAGC	6 cut(s)	252, 399, 1260, 2205, 2559, 2985
BstV2I	GAAGAC	2 cut(s)	1989, 3109
BstX2I	RGATCY	2 cut(s)	1757, 3249
BstXI	CCANNNNNNTGG	1 cut(s)	2558
BstYI	RGATCY	2 cut(s)	1757, 3249
Bsu15I	ATCGAT	3 cut(s)	480, 2694, 3299
BsuI	GTATCC	1 cut(s)	2427
BsuRI	GGCC	7 cut(s)	943, 1919, 2579, 2704, 3054, 3179, 3214
BsuTUI	ATCGAT	3 cut(s)	480, 2694, 3299
BtgI	CCRYGG	1 cut(s)	3055
BtsCI	GGATG	6 cut(s)	871, 1780, 2091, 2357, 3112, 3142
BtsI	GCAGTG	2 cut(s)	250, 2203
BtsIMutI	CAGTG	8 cut(s)	250, 390, 1245, 1366, 1551, 1938, 2203, 2610
Cac8I	GCNNGC	4 cut(s)	941, 1408, 1957, 2631
CciI	TCATGA	1 cut(s)	1528
CfoI	GCGC	2 cut(s)	31, 79
Cfr13I	GGNCC	7 cut(s)	941, 1379, 1556, 1918, 2577, 3031, 3143
ClaI	ATCGAT	3 cut(s)	480, 2694, 3299
Csp6I	GTAC	2 cut(s)	1399, 2926
CspCI	CAANNNNNGTGG	6 cut(s)	1168, 1203, 1342, 1377, 2889, 2924
CviQI	GTAC	2 cut(s)	1399, 2926
DriI	GACNNNNNGTC	1 cut(s)	968
EaeI	YGGCCR	2 cut(s)	3052, 3177
Eam1105I	GACNNNNNGTC	1 cut(s)	968
Ecl136II	GAGCTC	2 cut(s)	117, 269
Eco105I	TACGTA	1 cut(s)	2929
Eco130I	CCWWGG	6 cut(s)	374, 556, 1148, 2203, 2683, 3055
Eco147I	AGGCCT	1 cut(s)	2704
Eco24I	GRGCYC	4 cut(s)	119, 271, 1147, 2500
Eco31I	GGTCTC	1 cut(s)	199
Eco32I	GATATC	1 cut(s)	156
Eco47I	GGWCC	4 cut(s)	1379, 1556, 3031, 3143
Eco47III	AGCGCT	1 cut(s)	78
Eco53kI	GAGCTC	2 cut(s)	117, 269
Eco57I	CTGAAG	4 cut(s)	1794, 2082, 2238, 2868
Eco88I	CYCGRG	2 cut(s)	104, 1388
EcoICRI	GAGCTC	2 cut(s)	117, 269
EcoO109I	RGGNCCY	1 cut(s)	3143
EcoRII	CCWGG	8 cut(s)	182, 212, 658, 805, 1413, 1920, 2444, 2602
EcoRV	GATATC	1 cut(s)	156
EcoT14I	CCWWGG	6 cut(s)	374, 556, 1148, 2203, 2683, 3055
EcoT22I	ATGCAT	1 cut(s)	1615
EcoT38I	GRGCYC	4 cut(s)	119, 271, 1147, 2500
ErhI	CCWWGG	6 cut(s)	374, 556, 1148, 2203, 2683, 3055
Esp3I	CGTCTC	1 cut(s)	3187
FaqI	GGGAC	2 cut(s)	705, 2929
FauI	CCCGC	3 cut(s)	138, 932, 1888
Fnu4HI	GCNGC	7 cut(s)	238, 241, 413, 1274, 2194, 2548, 2999
FokI	GGATG	6 cut(s)	878, 1787, 2078, 2344, 3119, 3149
FriOI	GRGCYC	4 cut(s)	119, 271, 1147, 2500
Fsp4HI	GCNGC	7 cut(s)	238, 241, 413, 1274, 2194, 2548, 2999
GlaI	GCGC	2 cut(s)	30, 78
GluI	GCNGC	7 cut(s)	238, 241, 413, 1274, 2194, 2548, 2999
GsuI	CTGGAG	2 cut(s)	1269, 2586
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	7 cut(s)	943, 1919, 2579, 2704, 3054, 3179, 3214
HapII	CCGG	3 cut(s)	147, 520, 3272
HhaI	GCGC	2 cut(s)	31, 79
Hin6I	GCGC	2 cut(s)	29, 77
HinP1I	GCGC	2 cut(s)	29, 77
HincII	GTYRAC	1 cut(s)	1447
HindII	GTYRAC	1 cut(s)	1447
HindIII	AAGCTT	5 cut(s)	467, 745, 1169, 1634, 1657
HpaII	CCGG	3 cut(s)	147, 520, 3272
HphI	GGTGA	5 cut(s)	164, 2027, 2333, 2786, 3196
Hpy166II	GTNNAC	8 cut(s)	833, 1447, 2038, 2282, 2484, 2980, 3082, 3189
Hpy8I	GTNNAC	8 cut(s)	833, 1447, 2038, 2282, 2484, 2980, 3082, 3189
Hpy99I	CGWCG	1 cut(s)	3049
HpyCH4IV	ACGT	2 cut(s)	2895, 2928
HpyF10VI	GCNNNNNNNGC	7 cut(s)	246, 394, 1151, 1619, 1952, 2363, 2597
HpySE526I	ACGT	2 cut(s)	2895, 2928
HspAI	GCGC	2 cut(s)	29, 77
LmnI	GCTCC	7 cut(s)	185, 1100, 1150, 1425, 2251, 2503, 2605
Lsp1109I	GCAGC	6 cut(s)	252, 399, 1260, 2205, 2559, 2985
LweI	GCATC	6 cut(s)	1253, 1765, 2366, 2375, 2381, 3127
MaeII	ACGT	2 cut(s)	2895, 2928
MaeIII	GTNAC	5 cut(s)	1243, 1541, 2813, 2896, 2984
MboII	GAAGA	4 cut(s)	811, 1989, 2244, 3109
MfeI	CAATTG	2 cut(s)	1047, 1180
MflI	RGATCY	2 cut(s)	1757, 3249
MlsI	TGGCCA	1 cut(s)	3054
MluNI	TGGCCA	1 cut(s)	3054
MlyI	GAGTC	3 cut(s)	832, 1452, 2470
MmeI	TCCRAC	9 cut(s)	150, 183, 441, 806, 872, 1588, 2617, 2805, 3277
Mox20I	TGGCCA	1 cut(s)	3054
Mph1103I	ATGCAT	1 cut(s)	1615
MroXI	GAANNNNTTC	3 cut(s)	367, 1229, 2213
MscI	TGGCCA	1 cut(s)	3054
MseI	TTAA	9 cut(s)	420, 564, 716, 1005, 2051, 2541, 2676, 2709, 3242
MslI	CAYNNNNRTG	3 cut(s)	771, 2799, 3054
Msp20I	TGGCCA	1 cut(s)	3054
MspA1I	CMGCKG	2 cut(s)	1236, 2378
MspI	CCGG	3 cut(s)	147, 520, 3272
MspR9I	CCNGG	9 cut(s)	184, 214, 520, 660, 807, 1415, 1922, 2446, 2604
MunI	CAATTG	2 cut(s)	1047, 1180
Mva1269I	GAATGC	2 cut(s)	873, 906
MvaI	CCWGG	8 cut(s)	184, 214, 660, 807, 1415, 1922, 2446, 2604
MvnI	CGCG	2 cut(s)	29, 2785
MwoI	GCNNNNNNNGC	7 cut(s)	246, 394, 1151, 1619, 1952, 2363, 2597
NciI	CCSGG	1 cut(s)	520
NcoI	CCATGG	1 cut(s)	3055
NheI	GCTAGC	2 cut(s)	1955, 2629
NlaIV	GGNNCC	9 cut(s)	652, 1096, 1146, 1859, 2499, 2578, 3033, 3145, 3251
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	1243
NsiI	ATGCAT	1 cut(s)	1615
NspI	RCATGY	1 cut(s)	3088
NspV	TTCGAA	1 cut(s)	898
PaeR7I	CTCGAG	1 cut(s)	104
PagI	TCATGA	1 cut(s)	1528
PceI	AGGCCT	1 cut(s)	2704
PcsI	WCGNNNNNNNCGW	1 cut(s)	1095
PctI	GAATGC	2 cut(s)	873, 906
PdmI	GAANNNNTTC	3 cut(s)	367, 1229, 2213
PfoI	TCCNGGA	1 cut(s)	2602
PkrI	GCNGC	7 cut(s)	239, 242, 414, 1275, 2195, 2549, 3000
Ple19I	CGATCG	1 cut(s)	2698
PleI	GAGTC	3 cut(s)	832, 1451, 2470
PpsI	GAGTC	3 cut(s)	832, 1451, 2470
Ppu21I	YACGTR	2 cut(s)	2896, 2929
PpuMI	RGGWCCY	1 cut(s)	3143
Psp124BI	GAGCTC	2 cut(s)	119, 271
Psp5II	RGGWCCY	1 cut(s)	3143
Psp6I	CCWGG	8 cut(s)	182, 212, 658, 805, 1413, 1920, 2444, 2602
PspGI	CCWGG	8 cut(s)	182, 212, 658, 805, 1413, 1920, 2444, 2602
PspN4I	GGNNCC	9 cut(s)	652, 1096, 1146, 1859, 2499, 2578, 3033, 3145, 3251
PspPI	GGNCC	7 cut(s)	941, 1379, 1556, 1918, 2577, 3031, 3143
PspPPI	RGGWCCY	1 cut(s)	3143
PstI	CTGCAG	1 cut(s)	2195
PsuI	RGATCY	2 cut(s)	1757, 3249
PvuI	CGATCG	1 cut(s)	2698
PvuII	CAGCTG	1 cut(s)	2378
RsaI	GTAC	2 cut(s)	1400, 2927
RsaNI	GTAC	2 cut(s)	1399, 2926
RseI	CAYNNNNRTG	3 cut(s)	771, 2799, 3054
SacI	GAGCTC	2 cut(s)	119, 271
SaqAI	TTAA	9 cut(s)	420, 564, 716, 1005, 2051, 2541, 2676, 2709, 3242
SatI	GCNGC	7 cut(s)	238, 241, 413, 1274, 2194, 2548, 2999
Sau96I	GGNCC	7 cut(s)	941, 1379, 1556, 1918, 2577, 3031, 3143
SchI	GAGTC	3 cut(s)	832, 1452, 2470
ScrFI	CCNGG	9 cut(s)	184, 214, 520, 660, 807, 1415, 1922, 2446, 2604
SfaNI	GCATC	6 cut(s)	1253, 1765, 2366, 2375, 2381, 3127
SfcI	CTRYAG	2 cut(s)	2191, 2613
Sfr274I	CTCGAG	1 cut(s)	104
SfuI	TTCGAA	1 cut(s)	898
SinI	GGWCC	4 cut(s)	1379, 1556, 3031, 3143
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	3 cut(s)	771, 2799, 3054
SmlI	CTYRAG	7 cut(s)	104, 485, 1160, 1849, 1907, 1979, 2025
SmoI	CTYRAG	7 cut(s)	104, 485, 1160, 1849, 1907, 1979, 2025
SnaBI	TACGTA	1 cut(s)	2929
SseBI	AGGCCT	1 cut(s)	2704
SspI	AATATT	1 cut(s)	1315
SstI	GAGCTC	2 cut(s)	119, 271
StuI	AGGCCT	1 cut(s)	2704
StyD4I	CCNGG	9 cut(s)	182, 212, 518, 658, 805, 1413, 1920, 2444, 2602
StyI	CCWWGG	6 cut(s)	374, 556, 1148, 2203, 2683, 3055
TaiI	ACGT	2 cut(s)	2898, 2931
TatI	WGTACW	1 cut(s)	1398
TauI	GCSGC	1 cut(s)	240
Tru1I	TTAA	9 cut(s)	420, 564, 716, 1005, 2051, 2541, 2676, 2709, 3242
Tru9I	TTAA	9 cut(s)	420, 564, 716, 1005, 2051, 2541, 2676, 2709, 3242
TscAI	CASTG	8 cut(s)	250, 397, 1252, 1366, 1558, 1945, 2203, 2617
TseFI	GTSAC	1 cut(s)	1243
TseI	GCWGC	6 cut(s)	240, 412, 1273, 2193, 2547, 2998
Tsp45I	GTSAC	1 cut(s)	1243
TspGWI	ACGGA	5 cut(s)	294, 519, 850, 1087, 1452
TspRI	CASTG	8 cut(s)	250, 397, 1252, 1366, 1558, 1945, 2203, 2617
VneI	GTGCAC	1 cut(s)	3187
VpaK11BI	GGWCC	4 cut(s)	1379, 1556, 3031, 3143
XbaI	TCTAGA	2 cut(s)	880, 913
XceI	RCATGY	1 cut(s)	3088
XhoI	CTCGAG	1 cut(s)	104
XmnI	GAANNNNTTC	3 cut(s)	367, 1229, 2213
Zsp2I	ATGCAT	1 cut(s)	1615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.