pycom16g06880

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0006605
Physical Location & Seq
Forward (+)
4464472 .. 4466019
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 753 bp
ATGAAAGAGAGTGAAGAAAGCAGAGTAGCAAAGCACGACGAAGAAGGAAGCAGCGAGCAACAGATATGGAGTTGGGGGGCAGGAACGGACGGGCAACTGGGCATGGGCAGGCTACAGGACGAGCACCTCCCTCAGCTGCTTCGCCTCCCTTCTCTCTCCCCCGCCGCCGGATCCATCTGCTCCCTCGCCTGCGGCGGCGCTCACGTTCTCGCCTTAACCTCAGGTGGGAAGGTGCTGACATGGGGAAGGGGCACGTCTGGTCAACTGGGTCATACTGATACGGTCAACAGTCCAAATCCTAAGTTTGTAATGTCTTTGAACAACCTCTTCATTACTCATGTTTCTGCTGGTTGGAACCACTCCGGTTTTGTTTCAGATGCAGGGGATCTTTTCACGTGCGGAGATGGCTCGTTTGGCCAGCTCGGGCATGGTGATTTCCAGTCGCATTGCTATCCTGTCAAAGTCTCCTTCTTTGTTGATAAGAACGTGGAGCAGATAGCATGCGGGATGCGCCATTCGCTTGTTTTGGTGAAAGGTGTTTCAGGGGATGAAGTTTATGGGTTTGGTTCGGGGAAGCGTGGTCAACTGGGTATCTCTGAGGATAAGATCAAATTAGTTAATATTCCTGAACAAATTCATGGATTTGACAGCGTAAAAATCTCTAGCATTGCTGCAAATGGATCGATCAAAGTGCAGCGTTATCTGCTGATGGGCATTTGTACACTTGGGGAAGAGGGTTCGGTGACATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1 RRM_1

Protein Analysis

251

Amino Acids

26.48

Weight (kDa)

5.9

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alsin_RLD PF25384 20 - 99 7.6e-06 Alsin RCC1-like domain
RCC1 PF00415 21 - 72 4.4e-10 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 21 - 227 1.2e-45 RCC1-like domain
RCC1_2 PF13540 59 - 88 2.1e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 76 - 123 4.9e-14 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 111 - 140 5e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 128 - 176 2.5e-15 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 184 - 225 3.5e-06 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 162, 165, 192, 195, 399, 504
AclWI GGATC 4 cut(s) 165, 178, 393, 688
AcoI YGGCCR 1 cut(s) 415
AcsI RAATTY 1 cut(s) 633
AcvI CACGTG 1 cut(s) 396
AfaI GTAC 1 cut(s) 721
AfiI CCNNNNNNNGG 2 cut(s) 167, 225
AgsI TTSAA 1 cut(s) 319
AjiI CACGTC 1 cut(s) 255
AluBI AGCT 2 cut(s) 136, 421
AluI AGCT 2 cut(s) 136, 421
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 1 cut(s) 469
AlwI GGATC 4 cut(s) 165, 178, 393, 688
Ama87I CYCGRG 1 cut(s) 422
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 4 cut(s) 51, 136, 671, 694
ApoI RAATTY 1 cut(s) 633
Asp700I GAANNNNTTC 1 cut(s) 633
AspLEI GCGC 2 cut(s) 200, 513
AsuHPI GGTGA 2 cut(s) 443, 541
AvaI CYCGRG 1 cut(s) 422
AxyI CCTNAGG 1 cut(s) 220
BaeGI GKGCMC 1 cut(s) 254
BalI TGGCCA 1 cut(s) 417
BamHI GGATCC 1 cut(s) 170
BbrPI CACGTG 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 126
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 4 cut(s) 63, 123, 658, 706
BccI CCATC 3 cut(s) 182, 398, 703
BcgI CGANNNNNNTGC 4 cut(s) 663, 673, 697, 707
BcoDI GTCTC 1 cut(s) 469
BfaI CTAG 1 cut(s) 663
BfmI CTRYAG 1 cut(s) 113
BfoI RGCGCY 1 cut(s) 201
BisI GCNGC 7 cut(s) 52, 137, 165, 193, 196, 672, 695
BlsI GCNGC 7 cut(s) 53, 138, 166, 194, 197, 673, 696
BmeT110I CYCGRG 1 cut(s) 422
BmgBI CACGTC 1 cut(s) 255
BmiI GGNNCC 2 cut(s) 172, 356
BmrI ACTGGG 3 cut(s) 107, 275, 596
BmsI GCATC 2 cut(s) 367, 498
BmuI ACTGGG 3 cut(s) 107, 275, 596
Bpu10I CCTNAGC 1 cut(s) 132
Bsa29I ATCGAT 1 cut(s) 683
BsaAI YACGTR 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 362
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 225
Bse1I ACTGG 4 cut(s) 102, 270, 439, 591
Bse21I CCTNAGG 1 cut(s) 220
Bse3DI GCAATG 2 cut(s) 445, 666
BseCI ATCGAT 1 cut(s) 683
BseGI GGATG 2 cut(s) 513, 553
BseLI CCNNNNNNNGG 2 cut(s) 167, 225
BseMI GCAATG 2 cut(s) 445, 666
BseMII CTCAG 3 cut(s) 146, 234, 588
BseNI ACTGG 4 cut(s) 102, 270, 439, 591
BseSI GKGCMC 1 cut(s) 254
BseXI GCAGC 4 cut(s) 63, 123, 658, 706
BsgI GTGCAG 1 cut(s) 713
BshFI GGCC 1 cut(s) 417
BshVI ATCGAT 1 cut(s) 683
BsiHKAI GWGCWC 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 2 cut(s) 168, 363
BslI CCNNNNNNNGG 2 cut(s) 167, 225
BsmAI GTCTC 1 cut(s) 469
BsnI GGCC 1 cut(s) 417
BsoBI CYCGRG 1 cut(s) 422
Bsp1286I GDGCHC 2 cut(s) 126, 254
Bsp1407I TGTACA 1 cut(s) 719
Bsp143I GATC 5 cut(s) 170, 385, 606, 680, 684
BspACI CCGC 6 cut(s) 162, 165, 192, 195, 399, 504
BspANI GGCC 1 cut(s) 417
BspCNI CTCAG 3 cut(s) 145, 233, 589
BspDI ATCGAT 1 cut(s) 683
BspLI GGNNCC 2 cut(s) 172, 356
BspPI GGATC 4 cut(s) 165, 178, 393, 688
BsrDI GCAATG 2 cut(s) 445, 666
BsrGI TGTACA 1 cut(s) 719
BsrI ACTGG 4 cut(s) 102, 270, 439, 591
BssMI GATC 5 cut(s) 170, 385, 606, 680, 684
Bst4CI ACNGT 2 cut(s) 283, 290
Bst6I CTCTTC 2 cut(s) 332, 726
BstAUI TGTACA 1 cut(s) 719
BstBAI YACGTR 1 cut(s) 396
BstC8I GCNNGC 5 cut(s) 56, 110, 190, 419, 502
BstDEI CTNAG 4 cut(s) 132, 220, 300, 597
BstF5I GGATG 2 cut(s) 513, 553
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 2 cut(s) 200, 513
BstKTI GATC 5 cut(s) 173, 388, 609, 683, 687
BstMAI GTCTC 1 cut(s) 469
BstMBI GATC 5 cut(s) 170, 385, 606, 680, 684
BstMWI GCNNNNNNNGC 5 cut(s) 405, 414, 510, 517, 703
BstNSI RCATGY 1 cut(s) 504
BstSFI CTRYAG 1 cut(s) 113
BstSLI GKGCMC 1 cut(s) 254
BstV1I GCAGC 4 cut(s) 63, 123, 658, 706
BstX2I RGATCY 2 cut(s) 170, 385
BstYI RGATCY 2 cut(s) 170, 385
Bsu15I ATCGAT 1 cut(s) 683
Bsu36I CCTNAGG 1 cut(s) 220
BsuRI GGCC 1 cut(s) 417
BsuTUI ATCGAT 1 cut(s) 683
BtrI CACGTC 1 cut(s) 255
BtsCI GGATG 2 cut(s) 513, 553
Cac8I GCNNGC 5 cut(s) 56, 110, 190, 419, 502
CfoI GCGC 2 cut(s) 200, 513
ClaI ATCGAT 1 cut(s) 683
Csp6I GTAC 1 cut(s) 720
CviAII CATG 6 cut(s) 103, 240, 338, 428, 501, 638
CviJI RGCY 5 cut(s) 112, 136, 408, 417, 421
CviKI_1 RGCY 5 cut(s) 112, 136, 408, 417, 421
CviQI GTAC 1 cut(s) 720
DdeI CTNAG 4 cut(s) 132, 220, 300, 597
DpnI GATC 5 cut(s) 172, 387, 608, 682, 686
DpnII GATC 5 cut(s) 170, 385, 606, 680, 684
EaeI YGGCCR 1 cut(s) 415
Eam1104I CTCTTC 2 cut(s) 332, 726
EarI CTCTTC 2 cut(s) 332, 726
Eco72I CACGTG 1 cut(s) 396
Eco81I CCTNAGG 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 422
FaeI CATG 6 cut(s) 106, 243, 341, 431, 504, 641
FaiI YATR 9 cut(s) 67, 104, 241, 273, 339, 429, 502, 558, 639
FatI CATG 6 cut(s) 102, 239, 337, 427, 500, 637
FauI CCCGC 2 cut(s) 169, 497
Fnu4HI GCNGC 7 cut(s) 52, 137, 165, 193, 196, 672, 695
FokI GGATG 2 cut(s) 520, 560
Fsp4HI GCNGC 7 cut(s) 52, 137, 165, 193, 196, 672, 695
FspBI CTAG 1 cut(s) 663
GlaI GCGC 2 cut(s) 199, 512
GluI GCNGC 7 cut(s) 52, 137, 165, 193, 196, 672, 695
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 1 cut(s) 417
HapII CCGG 2 cut(s) 168, 363
HhaI GCGC 2 cut(s) 200, 513
Hin1II CATG 6 cut(s) 106, 243, 341, 431, 504, 641
Hin6I GCGC 2 cut(s) 198, 511
HinP1I GCGC 2 cut(s) 198, 511
HincII GTYRAC 3 cut(s) 263, 286, 584
HindII GTYRAC 3 cut(s) 263, 286, 584
HpaII CCGG 2 cut(s) 168, 363
HphI GGTGA 2 cut(s) 443, 541
Hpy166II GTNNAC 4 cut(s) 263, 286, 584, 722
Hpy188I TCNGA 2 cut(s) 376, 598
Hpy188III TCNNGA 1 cut(s) 626
Hpy8I GTNNAC 4 cut(s) 263, 286, 584, 722
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 5 cut(s) 38, 159, 223, 240, 478
HpyCH4III ACNGT 2 cut(s) 283, 290
HpyCH4IV ACGT 4 cut(s) 204, 254, 395, 486
HpyCH4V TGCA 3 cut(s) 380, 674, 694
HpyF10VI GCNNNNNNNGC 5 cut(s) 405, 414, 510, 517, 703
HpyF3I CTNAG 4 cut(s) 132, 220, 300, 597
HpySE526I ACGT 4 cut(s) 204, 254, 395, 486
Hsp92II CATG 6 cut(s) 106, 243, 341, 431, 504, 641
HspAI GCGC 2 cut(s) 198, 511
Kzo9I GATC 5 cut(s) 170, 385, 606, 680, 684
LmnI GCTCC 2 cut(s) 185, 490
Lsp1109I GCAGC 4 cut(s) 63, 123, 658, 706
LweI GCATC 2 cut(s) 367, 498
MaeI CTAG 1 cut(s) 663
MaeII ACGT 4 cut(s) 204, 254, 395, 486
MaeIII GTNAC 1 cut(s) 742
MalI GATC 5 cut(s) 172, 387, 608, 682, 686
MboI GATC 5 cut(s) 170, 385, 606, 680, 684
MboII GAAGA 4 cut(s) 26, 53, 319, 743
MflI RGATCY 2 cut(s) 170, 385
MhlI GDGCHC 2 cut(s) 126, 254
MlsI TGGCCA 1 cut(s) 417
MluCI AATT 2 cut(s) 611, 633
MluNI TGGCCA 1 cut(s) 417
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 8 cut(s) 137, 141, 155, 194, 229, 335, 592, 727
Mox20I TGGCCA 1 cut(s) 417
MroXI GAANNNNTTC 1 cut(s) 633
MscI TGGCCA 1 cut(s) 417
MseI TTAA 3 cut(s) 215, 618, 751
Msp20I TGGCCA 1 cut(s) 417
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 2 cut(s) 168, 363
MwoI GCNNNNNNNGC 5 cut(s) 405, 414, 510, 517, 703
NdeII GATC 5 cut(s) 170, 385, 606, 680, 684
NlaIII CATG 6 cut(s) 106, 243, 341, 431, 504, 641
NlaIV GGNNCC 2 cut(s) 172, 356
NmuCI GTSAC 1 cut(s) 742
NspI RCATGY 1 cut(s) 504
PaeI GCATGC 1 cut(s) 504
PdmI GAANNNNTTC 1 cut(s) 633
PkrI GCNGC 7 cut(s) 53, 138, 166, 194, 197, 673, 696
PmaCI CACGTG 1 cut(s) 396
PmlI CACGTG 1 cut(s) 396
Ppu21I YACGTR 1 cut(s) 396
PspCI CACGTG 1 cut(s) 396
PspN4I GGNNCC 2 cut(s) 172, 356
PsuI RGATCY 2 cut(s) 170, 385
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 1 cut(s) 721
RsaNI GTAC 1 cut(s) 720
SaqAI TTAA 3 cut(s) 215, 618, 751
SatI GCNGC 7 cut(s) 52, 137, 165, 193, 196, 672, 695
Sau3AI GATC 5 cut(s) 170, 385, 606, 680, 684
SduI GDGCHC 2 cut(s) 126, 254
SfaNI GCATC 2 cut(s) 367, 498
SfcI CTRYAG 1 cut(s) 113
SphI GCATGC 1 cut(s) 504
Sse9I AATT 2 cut(s) 611, 633
SsiI CCGC 6 cut(s) 162, 165, 192, 195, 399, 504
SspI AATATT 1 cut(s) 622
SspMI CTAG 1 cut(s) 663
TaaI ACNGT 2 cut(s) 283, 290
TaiI ACGT 4 cut(s) 207, 257, 398, 489
TaqI TCGA 1 cut(s) 683
TasI AATT 2 cut(s) 611, 633
TatI WGTACW 1 cut(s) 719
TauI GCSGC 3 cut(s) 167, 195, 198
Tru1I TTAA 3 cut(s) 215, 618, 751
Tru9I TTAA 3 cut(s) 215, 618, 751
TseFI GTSAC 1 cut(s) 742
TseI GCWGC 4 cut(s) 51, 136, 671, 694
Tsp45I GTSAC 1 cut(s) 742
TspDTI ATGAA 4 cut(s) 17, 319, 564, 626
TspGWI ACGGA 1 cut(s) 101
XapI RAATTY 1 cut(s) 633
XceI RCATGY 1 cut(s) 504
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.