Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009585

Physical Location & Seq

Genomic Coordinates Forward (+)

6351432 .. 6357090

Gene Structure 5659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2913 bp

ATGGAATCCGATTCCGACTCCGACGGCTCTCACATCTCTGCCACTCCCCCAAGACACAGTAAACCTTCATTACCACCACAGCCGCCACCGACAAATCGAAAGCGACAGCCGGCGCCAAATCGGAAGCCACCGCCACCAAAGCCAAAGCCTAGCATTCTCTCCTCCCGCACATCGAGACTTAGGTACAGACCTTCGTCTAAGTCCAAGCCCATTTCCGAACCCGAAACTCCCTCTTCCGAGCCCACCCGACCAGACCCGCCGCCCGATCCATCTCCTCTCCTCCTCCCCAATTTACCCTACCAAATCTGCCGCTGGCCGTCCGATCCATCCCGCGCGATCCCCACCGTCGATTCCAGCGATACCCTTCTCGCCCCACAGGGCAGGCACTTGTTCCAGTCACCGTCGTTCTCCAAAATCCGACGGACCTCCATCGATTTCGATTCTTTCCAAGACGACGAGCCGCTGCTGTCTTCTTCGGCGCCGAAGCCGGATCCAACGGCTGCAATTGGTGGGTCTGATTCTTCTGCCCCCAATCGGGTACCGCCAGAGCCAAAACGCGAAGCGGCTGCTGCCAAGTCTGGAGTTTCGGCCATAGCTGTGAAGAAACGTTTCAATTTGATTGGAGGCAATGTGCCTTCGGCGCCTGTGAAGTTTCGAAGCAGTGGGGCAGAAGGGAACTTTGTGAAGCTCAATCTGAATCGGGGGAAGCGCAAATTCGTGAACCGAAGAGGAAATAGCAGCTCGTCGGGTCGTCGAAAATTTTACAGAAAGGGGAAAAGGAAATTGAAAGCAGTAGATGAAAATGATGGGGAGACAATTGGTGAAGAAGATGAGTTGGTTGCAGATGCTATTGCAGAACAACAGATTCGGAAGCAAGACAGTAAAAGACCGAAATTTGATTCCGAATCGTTTGAAGAGGCGGTTTTGATGACTAGAAATGATCCGAGTGATGAGAATTTGGTGAAATTGTTGAGGTTAACTTATGGGTATGAATTGTTCCGAGATGGGCAGTTGGAGGCAATCAAGATGGTGCTCGAGGGGAAGTCGACAATGCTTGTTTTGCCTACGGGTGCTGGCAAATCGTTGTGTTATCAGTTGCCCTCATTAATTTTACCTGGGGTAACTTTGGTTGTCAGTCCATTGATTGCACTGATGATTGACCAGCTTAAGCAGCTGCCTCATATGATTCGTGGCGGTCTTATTTGTAGCAATCAGAGACCTGAAGAAGCTTCCGAGACAATAAGGCTGCTTCAACAAGGGGAGTTAAAGGTGCTTTTTGTTTCGCCGGAGAGGTTTTTGAATGCGGAATTCTTGTCTATATTTTCTGCTAACACAGTTGTGTCTCTTGTTGTGGTGGATGAAGCTCACTGTGTTTCAGAATGGTCACATAACTTCCGTCCCTCATATATGAGGCTTAGAGCTTGTTTTCTTCGTGCCAAGCTCAATGTCAACTGCATTCTTGCCATGACAGCTACGGCCACAGCCACAACTTTGGGTTCTGTCATGTCTGCTTTAGAGATTCCTCCAACTAATCTCATTCAAAAAGCAATACTAAGGGATAATTTACAACTTTCAGTGTCATTGAGTGGAAATAGAATGAAAGATCTGCTGCTGTTGATCAAGTCAACTTCGTTCAAGGATGTTCAGAGCATCATTATCTACTGCAAATTTCAGTTTGAAACTGAAATGATAAGCAGATGCTTATGCGACAATAATATCTCTGCAAAGAGTTACCACAGTGGTATCCCTGCTAAAGATCGTAGTCGAGTGCAGGAGTTGTTTTTCTCTAACAAGATACGAGTGGTTGTTGCAACTGTGGCCTTTGGCATGGGCCTTGACAAGAGGGATATTGGTGCTGTTATTCATTACACCTTGCCAGAAAGCTTGGAGGAGTATGTTCAGGAAATTGGACGAGCTGGGCGGGATGGGAGGTTGTCCCATTGCCATCTTTATTATGATGATAGCACATATTTTAAACTTCGCAGTCTTATGTATAGTGATGGTGTGGATGAATATATGGTAAACAAATTCCTCTGTCAAGTATTCACCAGTGATGAGAACTCGCATGGGAAAGTTTGTTCATTGGTTAAGGAAACTGCATCTCGCAAGTTTGATATGAAAGAAGAGGTGATGCTCACACTTCTAACGCAGTTGGAGTTGGGTGAAGTGCAGTATTTGCATTTACTTCCAGAGTTAAATGTGACTTGCACCTTGAATTTTCATAATACATCCCCAGCTTTACTTGCAGGGAAAGATGCTTTTGTTGCTGCAATTTTGAAAAAGTCTGAGACTAAGCAAGGACAATACGTGTTTGACATACCGACAGTGGCAAATAGCATTGGAGTTACAGCTACTGTCCTATCCAATCATCTTCAAATTTTAAAGTTGAAAGGAGAAGTAACATACGAACTGAAGGACCAAGCCTACTGCTTTACAATCGTCGAAGCCCCTGCAGATCTTTGTTCTCTATCAGCACATCTCACAAAATGGTTATCAGAGGTTGAAAGTTGCAAGGTGCGGAAGTTGGACGCAATGTTTAATGCGGCAGTTTTTGCCGTTAACTCTTGCGAGAAGACGCAAGGTTGTTGTGATGCCCAACACACACAATGTTTGCAAAAGAAAATTATCGAATACTTCGATGGAGATGACAATTCTGAAGTCCCTAATACGATGGGTAAATCCAGCCGATTTTTGCGAGCAGATATAAAAGTCTTTCTGCAGAGCAATTCACAGGCCAAATTCACTCCCAGAGCTGTTGCAAGGATAATGCATGGCATTGCAAGTCCATCCTATCCTTCTACATTCTGGTCTAAAACTCACTTCTGGGGAAGATACACAAGTATAGACTTCCAGGTGGTAATGGACGCGGCAAAGGCGGAACTGGTCAATTTTGTGGGGAAGAATGCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031668 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0042221 GO:0042623 GO:0042631 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070887 GO:0071103 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

971

Amino Acids

107.7

Weight (kDa)

8.92

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	335 - 495	2.3e-22	DEAD/DEAH box helicase
Helicase_C	PF00271	540 - 643	2.1e-18	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27880 AT1G27880
fragaria_vesca	FvH4_4g24310 FvH4_4g24310
malus_domestica	MD16G1111900.v1.1
prunus_persica	Prupe.1G233100_v2.0.a1
pyrus_communis	pycom13g09790 pycom16g09490
rosa_chinensis	RchiOBHm_Chr4g0431111
rosa_laevigata	RLG00000006924
rosa_multiflora	Rmu_co7983982.1_g000001 Rmu_co8245775.1_g000001 Rmu_sc0040015.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372700
rosa_rugosa	Rorug04G0248100 Rorug04G0248200 Rorug04G0248300
rosa_samantha	Rh4AG304700 Rh4BG311900 Rh4CG328200 Rh4DG308500
rosa_wichuraiana	Rw4G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	538
AccB1I	GGYRCC	4 cut(s)	112, 478, 538, 640
AccI	GTMKAC	1 cut(s)	1046
AccII	CGCG	4 cut(s)	333, 335, 558, 2867
AclI	AACGTT	1 cut(s)	607
AclWI	GGATC	6 cut(s)	260, 317, 331, 485, 498, 935
AcoI	YGGCCR	3 cut(s)	314, 588, 1476
AcuI	CTGAAG	3 cut(s)	1242, 2432, 2676
AcyI	GRCGYC	3 cut(s)	113, 479, 641
AfaI	GTAC	2 cut(s)	185, 540
AfiI	CCNNNNNNNGG	2 cut(s)	534, 535
AflII	CTTAAG	1 cut(s)	1166
AflIII	ACRYGT	1 cut(s)	2307
AjnI	CCWGG	2 cut(s)	1114, 2850
AleI	CACNNNNGTG	1 cut(s)	1337
AloI	GAACNNNNNNTCC	2 cut(s)	2062, 2094
Alw21I	GWGCWC	1 cut(s)	1035
Alw26I	GTCTC	6 cut(s)	169, 806, 1210, 1229, 1347, 2282
AlwI	GGATC	6 cut(s)	260, 317, 331, 485, 498, 935
AlwNI	CAGNNNCTG	1 cut(s)	2354
Ama87I	CYCGRG	1 cut(s)	1034
AoxI	GGCC	6 cut(s)	314, 588, 1476, 1818, 1831, 2733
AseI	ATTAAT	1 cut(s)	1106
Asp700I	GAANNNNTTC	1 cut(s)	608
Asp718I	GGTACC	1 cut(s)	538
AspLEI	GCGC	5 cut(s)	115, 335, 481, 643, 711
AspS9I	GGNCC	3 cut(s)	423, 1831, 2416
AsuHPI	GGTGA	6 cut(s)	390, 833, 973, 2038, 2140, 2174
AsuII	TTCGAA	1 cut(s)	655
AvaI	CYCGRG	1 cut(s)	1034
AvaII	GGWCC	2 cut(s)	423, 2416
BaeI	ACNNNNGTAYC	4 cut(s)	1726, 1759, 2824, 2857
BamHI	GGATCC	1 cut(s)	490
BanI	GGYRCC	4 cut(s)	112, 478, 538, 640
BanII	GRGCYC	1 cut(s)	243
BbsI	GAAGAC	2 cut(s)	462, 2579
Bbv12I	GWGCWC	1 cut(s)	1035
BceAI	ACGGC	5 cut(s)	40, 301, 513, 1491, 2540
BcgI	CGANNNNNNTGC	4 cut(s)	548, 582, 2432, 2466
BciT130I	CCWGG	2 cut(s)	1116, 2852
BciVI	GTATCC	1 cut(s)	1754
BclI	TGATCA	1 cut(s)	1617
BcoDI	GTCTC	6 cut(s)	169, 806, 1210, 1229, 1347, 2282
BfaI	CTAG	2 cut(s)	150, 933
BfmI	CTRYAG	2 cut(s)	2451, 2717
BfoI	RGCGCY	3 cut(s)	116, 482, 644
BfrI	CTTAAG	1 cut(s)	1166
BfuI	GTATCC	1 cut(s)	1754
BglII	AGATCT	2 cut(s)	1603, 2455
Bme1390I	CCNGG	2 cut(s)	1116, 2852
Bme18I	GGWCC	2 cut(s)	423, 2416
BmeT110I	CYCGRG	1 cut(s)	1034
BmgT120I	GGNCC	3 cut(s)	423, 1831, 2416
BmiI	GGNNCC	5 cut(s)	114, 480, 492, 540, 642
BmrFI	CCNGG	2 cut(s)	1116, 2852
BmsI	GCATC	7 cut(s)	835, 1659, 1688, 2108, 2121, 2245, 2581
BoxI	GACNNNNGTC	1 cut(s)	193
BpiI	GAAGAC	2 cut(s)	462, 2579
BpmI	CTGGAG	1 cut(s)	600
Bpu14I	TTCGAA	1 cut(s)	655
Bsa29I	ATCGAT	1 cut(s)	432
BsaAI	YACGTR	1 cut(s)	2308
BsaHI	GRCGYC	3 cut(s)	113, 479, 641
BsaI	GGTCTC	1 cut(s)	1210
BsaJI	CCNNGG	1 cut(s)	1115
BsaXI	ACNNNNNCTCC	2 cut(s)	615, 645
Bsc4I	CCNNNNNNNGG	2 cut(s)	534, 535
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	3 cut(s)	394, 2049, 2886
Bse3DI	GCAATG	4 cut(s)	634, 1939, 2538, 2775
BseBI	CCWGG	2 cut(s)	1116, 2852
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	1115
BseGI	GGATG	7 cut(s)	326, 1363, 1645, 1930, 2014, 2228, 2786
BseLI	CCNNNNNNNGG	2 cut(s)	534, 535
BseMI	GCAATG	4 cut(s)	634, 1939, 2538, 2775
BseMII	CTCAG	1 cut(s)	2277
BseNI	ACTGG	3 cut(s)	394, 2049, 2886
BseRI	GAGGAG	5 cut(s)	151, 264, 269, 272, 1904
BseYI	CCCAGC	2 cut(s)	1916, 2233
BsgI	GTGCAG	2 cut(s)	1790, 2189
Bsh1236I	CGCG	4 cut(s)	333, 335, 558, 2867
BshFI	GGCC	6 cut(s)	316, 590, 1478, 1820, 1833, 2735
BshNI	GGYRCC	4 cut(s)	112, 478, 538, 640
BshVI	ATCGAT	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	1035
BsiHKCI	CYCGRG	1 cut(s)	1034
BsiSI	CCGG	3 cut(s)	110, 488, 1286
BslFI	GGGAC	3 cut(s)	1383, 1921, 2645
BslI	CCNNNNNNNGG	2 cut(s)	534, 535
BsmAI	GTCTC	6 cut(s)	169, 806, 1210, 1229, 1347, 2282
BsmFI	GGGAC	3 cut(s)	1383, 1921, 2645
BsmI	GAATGC	4 cut(s)	153, 1306, 1455, 2908
BsnI	GGCC	6 cut(s)	316, 590, 1478, 1820, 1833, 2735
Bso31I	GGTCTC	1 cut(s)	1210
BsoBI	CYCGRG	1 cut(s)	1034
Bsp119I	TTCGAA	1 cut(s)	655
Bsp1286I	GDGCHC	2 cut(s)	243, 1035
Bsp143I	GATC	9 cut(s)	265, 322, 336, 490, 940, 1603, 1617, 1756, 2455
BspANI	GGCC	6 cut(s)	316, 590, 1478, 1820, 1833, 2735
BspCNI	CTCAG	1 cut(s)	2278
BspDI	ATCGAT	1 cut(s)	432
BspFNI	CGCG	4 cut(s)	333, 335, 558, 2867
BspLI	GGNNCC	5 cut(s)	114, 480, 492, 540, 642
BspMAI	CTGCAG	2 cut(s)	2455, 2721
BspPI	GGATC	6 cut(s)	260, 317, 331, 485, 498, 935
BspT104I	TTCGAA	1 cut(s)	655
BspT107I	GGYRCC	4 cut(s)	112, 478, 538, 640
BspTI	CTTAAG	1 cut(s)	1166
BspTNI	GGTCTC	1 cut(s)	1210
BsrDI	GCAATG	4 cut(s)	634, 1939, 2538, 2775
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	3 cut(s)	394, 2049, 2886
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	1115
BssMI	GATC	9 cut(s)	265, 322, 336, 490, 940, 1603, 1617, 1756, 2455
BssNI	GRCGYC	3 cut(s)	113, 479, 641
Bst2UI	CCWGG	2 cut(s)	1116, 2852
Bst6I	CTCTTC	4 cut(s)	238, 721, 909, 2118
BstACI	GRCGYC	3 cut(s)	113, 479, 641
BstAFI	CTTAAG	1 cut(s)	1166
BstAPI	GCANNNNNTGC	2 cut(s)	2176, 2552
BstBAI	YACGTR	1 cut(s)	2308
BstBI	TTCGAA	1 cut(s)	655
BstC8I	GCNNGC	5 cut(s)	111, 314, 383, 1075, 2697
BstDEI	CTNAG	6 cut(s)	179, 198, 1415, 1553, 2286, 2292
BstF5I	GGATG	7 cut(s)	326, 1363, 1645, 1930, 2014, 2228, 2786
BstFNI	CGCG	4 cut(s)	333, 335, 558, 2867
BstH2I	RGCGCY	3 cut(s)	116, 482, 644
BstHHI	GCGC	5 cut(s)	115, 335, 481, 643, 711
BstKTI	GATC	9 cut(s)	268, 325, 339, 493, 943, 1606, 1620, 1759, 2458
BstMAI	GTCTC	6 cut(s)	169, 806, 1210, 1229, 1347, 2282
BstMBI	GATC	9 cut(s)	265, 322, 336, 490, 940, 1603, 1617, 1756, 2455
BstNI	CCWGG	2 cut(s)	1116, 2852
BstPAI	GACNNNNGTC	1 cut(s)	193
BstSCI	CCNGG	2 cut(s)	1114, 2850
BstSFI	CTRYAG	2 cut(s)	2451, 2717
BstUI	CGCG	4 cut(s)	333, 335, 558, 2867
BstV2I	GAAGAC	2 cut(s)	462, 2579
BstX2I	RGATCY	3 cut(s)	490, 1603, 2455
BstXI	CCANNNNNNTGG	1 cut(s)	1492
BstYI	RGATCY	3 cut(s)	490, 1603, 2455
Bsu15I	ATCGAT	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	1754
BsuRI	GGCC	6 cut(s)	316, 590, 1478, 1820, 1833, 2735
BsuTUI	ATCGAT	1 cut(s)	432
BtsCI	GGATG	7 cut(s)	326, 1363, 1645, 1930, 2014, 2228, 2786
BtsI	GCAGTG	1 cut(s)	667
BtsIMutI	CAGTG	7 cut(s)	667, 1148, 1366, 1581, 1744, 2056, 2331
Cac8I	GCNNGC	5 cut(s)	111, 314, 383, 1075, 2697
CaiI	CAGNNNCTG	1 cut(s)	2354
CfoI	GCGC	5 cut(s)	115, 335, 481, 643, 711
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	3 cut(s)	423, 1831, 2416
ClaI	ATCGAT	1 cut(s)	432
CseI	GACGC	3 cut(s)	2537, 2584, 2873
Csp6I	GTAC	2 cut(s)	184, 539
CviAII	CATG	5 cut(s)	1465, 1504, 1828, 2066, 2771
CviQI	GTAC	2 cut(s)	184, 539
DdeI	CTNAG	6 cut(s)	179, 198, 1415, 1553, 2286, 2292
DinI	GGCGCC	3 cut(s)	114, 480, 642
DpnI	GATC	9 cut(s)	267, 324, 338, 492, 942, 1605, 1619, 1758, 2457
DpnII	GATC	9 cut(s)	265, 322, 336, 490, 940, 1603, 1617, 1756, 2455
DraI	TTTAAA	2 cut(s)	1975, 2382
EaeI	YGGCCR	3 cut(s)	314, 588, 1476
Eam1104I	CTCTTC	4 cut(s)	238, 721, 909, 2118
EarI	CTCTTC	4 cut(s)	238, 721, 909, 2118
EciI	GGCGGA	1 cut(s)	2891
Eco24I	GRGCYC	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	1210
Eco47I	GGWCC	2 cut(s)	423, 2416
Eco57I	CTGAAG	3 cut(s)	1242, 2432, 2676
Eco88I	CYCGRG	1 cut(s)	1034
EcoRI	GAATTC	1 cut(s)	1307
EcoRII	CCWGG	2 cut(s)	1114, 2850
EcoT22I	ATGCAT	1 cut(s)	2772
EcoT38I	GRGCYC	1 cut(s)	243
EgeI	GGCGCC	3 cut(s)	114, 480, 642
EheI	GGCGCC	3 cut(s)	114, 480, 642
FaeI	CATG	5 cut(s)	1468, 1507, 1831, 2069, 2774
FaqI	GGGAC	3 cut(s)	1383, 1921, 2645
FatI	CATG	5 cut(s)	1464, 1503, 1827, 2065, 2770
FauI	CCCGC	4 cut(s)	173, 264, 338, 1914
FauNDI	CATATG	1 cut(s)	1182
FbaI	TGATCA	1 cut(s)	1617
FblI	GTMKAC	1 cut(s)	1046
FokI	GGATG	7 cut(s)	313, 1370, 1652, 1937, 2021, 2215, 2773
FriOI	GRGCYC	1 cut(s)	243
FspBI	CTAG	2 cut(s)	150, 933
GlaI	GCGC	5 cut(s)	114, 334, 480, 642, 710
GsaI	CCCAGC	2 cut(s)	1920, 2237
GsuI	CTGGAG	1 cut(s)	600
HaeII	RGCGCY	3 cut(s)	116, 482, 644
HaeIII	GGCC	6 cut(s)	316, 590, 1478, 1820, 1833, 2735
HapII	CCGG	3 cut(s)	110, 488, 1286
HgaI	GACGC	3 cut(s)	2537, 2584, 2873
HhaI	GCGC	5 cut(s)	115, 335, 481, 643, 711
Hin1I	GRCGYC	3 cut(s)	113, 479, 641
Hin1II	CATG	5 cut(s)	1468, 1507, 1831, 2069, 2774
Hin6I	GCGC	5 cut(s)	113, 333, 479, 641, 709
HinP1I	GCGC	5 cut(s)	113, 333, 479, 641, 709
HincII	GTYRAC	5 cut(s)	978, 1047, 1450, 1626, 2560
HindII	GTYRAC	5 cut(s)	978, 1047, 1450, 1626, 2560
HindIII	AAGCTT	2 cut(s)	1227, 1882
HpaI	GTTAAC	2 cut(s)	978, 2560
HpaII	CCGG	3 cut(s)	110, 488, 1286
HphI	GGTGA	6 cut(s)	390, 833, 973, 2038, 2140, 2174
Hpy166II	GTNNAC	8 cut(s)	62, 721, 978, 1047, 1450, 1626, 2023, 2560
Hpy188III	TCNNGA	6 cut(s)	174, 579, 718, 1024, 1901, 2189
Hpy8I	GTNNAC	8 cut(s)	62, 721, 978, 1047, 1450, 1626, 2023, 2560
Hpy99I	CGWCG	8 cut(s)	26, 350, 406, 423, 458, 748, 756, 2444
HpyAV	CCTTC	7 cut(s)	75, 201, 374, 645, 665, 2407, 2805
HpyCH4IV	ACGT	2 cut(s)	607, 2307
HpyF3I	CTNAG	6 cut(s)	179, 198, 1415, 1553, 2286, 2292
HpySE526I	ACGT	2 cut(s)	607, 2307
Hsp92I	GRCGYC	3 cut(s)	113, 479, 641
Hsp92II	CATG	5 cut(s)	1468, 1507, 1831, 2069, 2774
HspAI	GCGC	5 cut(s)	113, 333, 479, 641, 709
KasI	GGCGCC	3 cut(s)	112, 478, 640
KpnI	GGTACC	1 cut(s)	542
KroI	GCCGGC	1 cut(s)	109
KroNI	GCCGGC	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	1617
KspAI	GTTAAC	2 cut(s)	978, 2560
Kzo9I	GATC	9 cut(s)	265, 322, 336, 490, 940, 1603, 1617, 1756, 2455
LweI	GCATC	7 cut(s)	835, 1659, 1688, 2108, 2121, 2245, 2581
MaeI	CTAG	2 cut(s)	150, 933
MaeII	ACGT	2 cut(s)	607, 2307
MaeIII	GTNAC	7 cut(s)	396, 1120, 1383, 1730, 2200, 2344, 2398
MalI	GATC	9 cut(s)	267, 324, 338, 492, 942, 1605, 1619, 1758, 2457
MboI	GATC	9 cut(s)	265, 322, 336, 490, 940, 1603, 1617, 1756, 2455
MfeI	CAATTG	2 cut(s)	504, 816
MflI	RGATCY	3 cut(s)	490, 1603, 2455
MhlI	GDGCHC	2 cut(s)	243, 1035
Mly113I	GGCGCC	3 cut(s)	113, 479, 641
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	8 cut(s)	39, 45, 442, 518, 993, 1550, 2133, 2505
Mph1103I	ATGCAT	1 cut(s)	2772
MroNI	GCCGGC	1 cut(s)	109
MroXI	GAANNNNTTC	1 cut(s)	608
MslI	CAYNNNNRTG	2 cut(s)	596, 1337
MspA1I	CMGCKG	3 cut(s)	312, 463, 1174
MspCI	CTTAAG	1 cut(s)	1166
MspI	CCGG	3 cut(s)	110, 488, 1286
MspR9I	CCNGG	2 cut(s)	1116, 2852
MunI	CAATTG	2 cut(s)	504, 816
Mva1269I	GAATGC	4 cut(s)	153, 1306, 1455, 2908
MvaI	CCWGG	2 cut(s)	1116, 2852
MvnI	CGCG	4 cut(s)	333, 335, 558, 2867
NaeI	GCCGGC	1 cut(s)	111
NarI	GGCGCC	3 cut(s)	113, 479, 641
NdeI	CATATG	1 cut(s)	1182
NdeII	GATC	9 cut(s)	265, 322, 336, 490, 940, 1603, 1617, 1756, 2455
NgoMIV	GCCGGC	1 cut(s)	109
NlaIII	CATG	5 cut(s)	1468, 1507, 1831, 2069, 2774
NlaIV	GGNNCC	5 cut(s)	114, 480, 492, 540, 642
NmuCI	GTSAC	3 cut(s)	396, 1383, 2200
NsiI	ATGCAT	1 cut(s)	2772
NspV	TTCGAA	1 cut(s)	655
OliI	CACNNNNGTG	1 cut(s)	1337
PaeR7I	CTCGAG	1 cut(s)	1034
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 2634
PctI	GAATGC	4 cut(s)	153, 1306, 1455, 2908
PdiI	GCCGGC	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	608
PleI	GAGTC	1 cut(s)	11
PluTI	GGCGCC	3 cut(s)	116, 482, 644
PpsI	GAGTC	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	2308
PshAI	GACNNNNGTC	1 cut(s)	193
PshBI	ATTAAT	1 cut(s)	1106
Psp1406I	AACGTT	1 cut(s)	607
Psp6I	CCWGG	2 cut(s)	1114, 2850
PspFI	CCCAGC	2 cut(s)	1916, 2233
PspGI	CCWGG	2 cut(s)	1114, 2850
PspN4I	GGNNCC	5 cut(s)	114, 480, 492, 540, 642
PspPI	GGNCC	3 cut(s)	423, 1831, 2416
PspXI	VCTCGAGB	1 cut(s)	1034
PsrI	GAACNNNNNNTAC	2 cut(s)	980, 1012
PstI	CTGCAG	2 cut(s)	2455, 2721
PstNI	CAGNNNCTG	1 cut(s)	2354
PsuI	RGATCY	3 cut(s)	490, 1603, 2455
PvuII	CAGCTG	1 cut(s)	1174
RsaI	GTAC	2 cut(s)	185, 540
RsaNI	GTAC	2 cut(s)	184, 539
RseI	CAYNNNNRTG	2 cut(s)	596, 1337
SalI	GTCGAC	1 cut(s)	1045
Sau3AI	GATC	9 cut(s)	265, 322, 336, 490, 940, 1603, 1617, 1756, 2455
Sau96I	GGNCC	3 cut(s)	423, 1831, 2416
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	2 cut(s)	1116, 2852
SduI	GDGCHC	2 cut(s)	243, 1035
SfaNI	GCATC	7 cut(s)	835, 1659, 1688, 2108, 2121, 2245, 2581
SfcI	CTRYAG	2 cut(s)	2451, 2717
SfoI	GGCGCC	3 cut(s)	114, 480, 642
Sfr274I	CTCGAG	1 cut(s)	1034
SfuI	TTCGAA	1 cut(s)	655
SinI	GGWCC	2 cut(s)	423, 2416
SlaI	CTCGAG	1 cut(s)	1034
SmiMI	CAYNNNNRTG	2 cut(s)	596, 1337
SmlI	CTYRAG	2 cut(s)	1034, 1166
SmoI	CTYRAG	2 cut(s)	1034, 1166
SspDI	GGCGCC	3 cut(s)	112, 478, 640
SspMI	CTAG	2 cut(s)	150, 933
StyD4I	CCNGG	2 cut(s)	1114, 2850
TaiI	ACGT	2 cut(s)	610, 2310
TaqII	GACCGA	1 cut(s)	904
TauI	GCSGC	7 cut(s)	85, 262, 312, 463, 566, 2546, 2870
TscAI	CASTG	7 cut(s)	667, 1155, 1373, 1581, 1744, 2056, 2331
TseFI	GTSAC	3 cut(s)	396, 1383, 2200
Tsp45I	GTSAC	3 cut(s)	396, 1383, 2200
TspGWI	ACGGA	2 cut(s)	436, 1385
TspRI	CASTG	7 cut(s)	667, 1155, 1373, 1581, 1744, 2056, 2331
Vha464I	CTTAAG	1 cut(s)	1166
VpaK11BI	GGWCC	2 cut(s)	423, 2416
VspI	ATTAAT	1 cut(s)	1106
XhoI	CTCGAG	1 cut(s)	1034
XmiI	GTMKAC	1 cut(s)	1046
XmnI	GAANNNNTTC	1 cut(s)	608
XspI	CTAG	2 cut(s)	150, 933
Zsp2I	ATGCAT	1 cut(s)	2772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.