Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007442

Physical Location & Seq

Genomic Coordinates Reverse (-)

6377294 .. 6379158

Gene Structure 1865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g09560.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCGGACGTTTTTATAAAAACAGAGGAGCCACCTTCCCAACTTATCCCTCTTCTCGATTCTAGTAACAATGACAACCACCACCACAACAACCCCCACAGCAACCGTCACCTGGGCGGAGAAGAAGAATACAAAGGTACCCCATTGGACCAAACCCTCCAATGGCTAGAAACGTTTCTCACTCTCTTGGGCTTCAACCAATCTTCTTGGTTGAGCCTTGTCCTGTCCTGGACGGCTCTGGCTCTCATCGGTGTGGCTCTTCCGGTGGTTGTGCTTGTGGTGTTCAACTGCTCCGACTGTAAGAAGTATCAGATTAAAAGGTTCGAGCTCGTTATCGTGGGCTCGCAGGCGATCCTGGCGGCGGTCTCTGTGCTCTGCATCTCACCCAGACTTCGCAAGTATGGCATTCGGAGGTTCCTCTTTGTCGATCGTTATAGCGGCCATATCGTTCGGTTTCGAAACGATTACATCAAGCAGATTAAGGATTCTTTCCGATTGCTTGTTCGGTGGGCACTGCCATGTTTTCTTTTGAAGACACTGCGTGAGGTCGTCCGCATGATATACGTGCATCACGATTCATGGGGGTGGGGGAAATCAGTTGGTGTATTGTTCACTTTGGTTCTATCGTGGGCTTATGTGAGTACAATCACTCTAACAGCCAGCATTTTGTTTCACTTGGTCTGCAATTTGCAAGTTATCCACTTCGACGATTATGCAAGGCTCTTGGAAAGGGAATCTGATGTGCTGGTATTTATGGACGAGCATATTCGTCTGCGCTACCATCTCTGTAAAATAAGCCACAGGTTCCGAATCTTCCTTCTCCTGCAGTTCATAGTTGTCACCGCAAGCCAGTTTGTCACTCTATTTGAGACCACAGAATACAGGGGAGACATCACTGTCATAAATGGCGGCGATTTTGCAGTCTCCACAATTGTTCAAGTTGTGGGCATTATTCTCTCCCTGCACGCAGCGACCAGAATTTCTCATAGAGCGCAAGGCATAGTGACAGTTGCCAGTAGATGGCATGCGTTAATGACATGCAGTTCTAACGATACATCTCACAACAGAAGTTCAAACTGCTTGGTGAACCCAGAGGCTGCCGACACATTGAACTCGCTGCAAATAAGCTACTCCGAGAGTGACTTGGAGTCGATGGATTACGTTCCAATGCCTACGAATACACAGCTAGCTTCGTACATGTCTTCCTATCACAGGAGACAAGCTTTCGGTATGGATCAGCTTACACTGCCTCTAAAATACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3537

Protein Analysis

422

Amino Acids

48.13

Weight (kDa)

8.09

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67570 AT1G67570
fragaria_vesca	FvH4_4g24190 FvH4_4g24190 FvH4_4g24190
malus_domestica	MD13G1113500.v1.1 MD13G1113900.v1.1 MD16G1112800.v1.1 MD16G1113100.v1.1
prunus_persica	Prupe.1G232600_v2.0.a1
pyrus_communis	pycom13g09910 pycom16g09560 pycom16g09600
rosa_chinensis	RchiOBHm_Chr4g0431031
rosa_laevigata	RLG00000006933
rosa_multiflora	Rmu_sc0013571.1_g000001 Rmu_sc0026528.1_g000001 Rmu_sc0026529.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372650
rosa_rugosa	Rorug04G0247500
rosa_samantha	Rh4AG304300 Rh4BG311500 Rh4CG327800 Rh4DG307900
rosa_wichuraiana	Rw4G026420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
AasI	GACNNNNNNGTC	1 cut(s)	896
Acc65I	GGTACC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	137
AccB7I	CCANNNNNTGG	1 cut(s)	1020
AciI	CCGC	8 cut(s)	5, 117, 359, 362, 438, 553, 843, 909
AclI	AACGTT	1 cut(s)	173
AclWI	GGATC	2 cut(s)	346, 1242
AcoI	YGGCCR	1 cut(s)	439
AcsI	RAATTY	1 cut(s)	978
AdeI	CACNNNGTG	1 cut(s)	542
AfaI	GTAC	3 cut(s)	139, 643, 1196
AfiI	CCNNNNNNNGG	5 cut(s)	112, 162, 361, 1020, 1212
AflIII	ACRYGT	1 cut(s)	1197
AgsI	TTSAA	6 cut(s)	196, 286, 532, 938, 1074, 1111
AhdI	GACNNNNNGTC	1 cut(s)	1147
AjnI	CCWGG	3 cut(s)	111, 227, 354
AluBI	AGCT	6 cut(s)	328, 1128, 1186, 1190, 1223, 1240
AluI	AGCT	6 cut(s)	328, 1128, 1186, 1190, 1223, 1240
Alw21I	GWGCWC	2 cut(s)	330, 375
Alw26I	GTCTC	5 cut(s)	370, 863, 882, 928, 1210
AlwI	GGATC	2 cut(s)	346, 1242
AlwNI	CAGNNNCTG	1 cut(s)	1097
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	3 cut(s)	968, 1097, 1117
ApoI	RAATTY	1 cut(s)	978
Asp700I	GAANNNNTTC	1 cut(s)	174
Asp718I	GGTACC	1 cut(s)	137
AspLEI	GCGC	2 cut(s)	777, 994
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	4 cut(s)	101, 375, 832, 1096
AsuII	TTCGAA	1 cut(s)	457
AsuNHI	GCTAGC	1 cut(s)	1186
AvaII	GGWCC	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	514
BaeI	ACNNNNGTAYC	2 cut(s)	121, 154
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	2 cut(s)	330, 344
BbsI	GAAGAC	2 cut(s)	539, 1194
Bbv12I	GWGCWC	2 cut(s)	330, 375
BbvI	GCAGC	3 cut(s)	980, 1084, 1104
BccI	CCATC	3 cut(s)	789, 1014, 1147
BceAI	ACGGC	1 cut(s)	249
BcgI	CGANNNNNNTGC	2 cut(s)	695, 729
BciT130I	CCWGG	3 cut(s)	113, 229, 356
BcoDI	GTCTC	5 cut(s)	370, 863, 882, 928, 1210
BfaI	CTAG	3 cut(s)	63, 167, 1187
BfmI	CTRYAG	1 cut(s)	824
BisI	GCNGC	6 cut(s)	360, 439, 910, 969, 1098, 1118
BlsI	GCNGC	6 cut(s)	361, 440, 911, 970, 1099, 1119
Bme1390I	CCNGG	3 cut(s)	113, 229, 356
Bme18I	GGWCC	1 cut(s)	148
BmeRI	GACNNNNNGTC	1 cut(s)	1147
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	4 cut(s)	30, 139, 416, 806
BmrFI	CCNGG	3 cut(s)	113, 229, 356
BmsI	GCATC	2 cut(s)	387, 577
BmtI	GCTAGC	1 cut(s)	1190
BpiI	GAAGAC	2 cut(s)	539, 1194
Bpu14I	TTCGAA	1 cut(s)	457
BsaAI	YACGTR	1 cut(s)	565
BsaI	GGTCTC	2 cut(s)	370, 863
BsaJI	CCNNGG	1 cut(s)	112
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	5 cut(s)	112, 162, 361, 1020, 1212
Bse1I	ACTGG	2 cut(s)	850, 1014
BseBI	CCWGG	3 cut(s)	113, 229, 356
BseDI	CCNNGG	1 cut(s)	112
BseLI	CCNNNNNNNGG	5 cut(s)	112, 162, 361, 1020, 1212
BseNI	ACTGG	2 cut(s)	850, 1014
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	3 cut(s)	980, 1084, 1104
BsgI	GTGCAG	1 cut(s)	947
Bsh1285I	CGRYCG	1 cut(s)	430
BshFI	GGCC	1 cut(s)	441
BshNI	GGYRCC	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	430
BsiHKAI	GWGCWC	2 cut(s)	330, 375
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	5 cut(s)	112, 162, 361, 1020, 1212
BsmAI	GTCTC	5 cut(s)	370, 863, 882, 928, 1210
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	1 cut(s)	441
Bso31I	GGTCTC	2 cut(s)	370, 863
Bsp119I	TTCGAA	1 cut(s)	457
Bsp1286I	GDGCHC	4 cut(s)	330, 344, 375, 514
Bsp143I	GATC	3 cut(s)	351, 427, 1234
BspACI	CCGC	8 cut(s)	5, 117, 359, 362, 438, 553, 843, 909
BspANI	GGCC	1 cut(s)	441
BspLI	GGNNCC	4 cut(s)	30, 139, 416, 806
BspMAI	CTGCAG	1 cut(s)	828
BspOI	GCTAGC	1 cut(s)	1190
BspPI	GGATC	2 cut(s)	346, 1242
BspQI	GCTCTTC	1 cut(s)	264
BspT104I	TTCGAA	1 cut(s)	457
BspT107I	GGYRCC	1 cut(s)	137
BspTNI	GGTCTC	2 cut(s)	370, 863
BsrI	ACTGG	2 cut(s)	850, 1014
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	3 cut(s)	351, 427, 1234
Bst2UI	CCWGG	3 cut(s)	113, 229, 356
Bst4CI	ACNGT	4 cut(s)	107, 299, 898, 1009
Bst6I	CTCTTC	2 cut(s)	57, 264
BstBAI	YACGTR	1 cut(s)	565
BstBI	TTCGAA	1 cut(s)	457
BstC8I	GCNNGC	7 cut(s)	344, 348, 661, 847, 966, 1026, 1188
BstENI	CCTNNNNNAGG	1 cut(s)	1210
BstHHI	GCGC	2 cut(s)	777, 994
BstKTI	GATC	3 cut(s)	354, 430, 1237
BstMAI	GTCTC	5 cut(s)	370, 863, 882, 928, 1210
BstMBI	GATC	3 cut(s)	351, 427, 1234
BstMCI	CGRYCG	1 cut(s)	430
BstMWI	GCNNNNNNNGC	3 cut(s)	356, 402, 1246
BstNI	CCWGG	3 cut(s)	113, 229, 356
BstNSI	RCATGY	3 cut(s)	1028, 1041, 1201
BstSCI	CCNGG	3 cut(s)	111, 227, 354
BstSFI	CTRYAG	1 cut(s)	824
BstSLI	GKGCMC	1 cut(s)	514
BstV1I	GCAGC	3 cut(s)	980, 1084, 1104
BstV2I	GAAGAC	2 cut(s)	539, 1194
BsuRI	GGCC	1 cut(s)	441
BtsI	GCAGTG	3 cut(s)	512, 536, 1244
BtsIMutI	CAGTG	4 cut(s)	512, 536, 894, 1244
Cac8I	GCNNGC	7 cut(s)	344, 348, 661, 847, 966, 1026, 1188
CaiI	CAGNNNCTG	1 cut(s)	1097
CfoI	GCGC	2 cut(s)	777, 994
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	3 cut(s)	138, 642, 1195
CviAII	CATG	6 cut(s)	519, 556, 579, 1025, 1038, 1198
CviQI	GTAC	3 cut(s)	138, 642, 1195
DpnI	GATC	3 cut(s)	353, 429, 1236
DpnII	GATC	3 cut(s)	351, 427, 1234
DraIII	CACNNNGTG	1 cut(s)	542
DrdI	GACNNNNNNGTC	1 cut(s)	896
DriI	GACNNNNNGTC	1 cut(s)	1147
DseDI	GACNNNNNNGTC	1 cut(s)	896
EaeI	YGGCCR	1 cut(s)	439
Eam1104I	CTCTTC	2 cut(s)	57, 264
Eam1105I	GACNNNNNGTC	1 cut(s)	1147
EarI	CTCTTC	2 cut(s)	57, 264
EciI	GGCGGA	2 cut(s)	20, 132
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	2 cut(s)	330, 344
Eco31I	GGTCTC	2 cut(s)	370, 863
Eco47I	GGWCC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	328
EcoNI	CCTNNNNNAGG	1 cut(s)	1210
EcoRII	CCWGG	3 cut(s)	111, 227, 354
EcoT38I	GRGCYC	2 cut(s)	330, 344
FaeI	CATG	6 cut(s)	522, 559, 582, 1028, 1041, 1201
FatI	CATG	6 cut(s)	518, 555, 578, 1024, 1037, 1197
Fnu4HI	GCNGC	6 cut(s)	360, 439, 910, 969, 1098, 1118
FriOI	GRGCYC	2 cut(s)	330, 344
Fsp4HI	GCNGC	6 cut(s)	360, 439, 910, 969, 1098, 1118
FspBI	CTAG	3 cut(s)	63, 167, 1187
GlaI	GCGC	2 cut(s)	776, 993
GluI	GCNGC	6 cut(s)	360, 439, 910, 969, 1098, 1118
HaeIII	GGCC	1 cut(s)	441
HapII	CCGG	1 cut(s)	263
HhaI	GCGC	2 cut(s)	777, 994
Hin1II	CATG	6 cut(s)	522, 559, 582, 1028, 1041, 1201
Hin6I	GCGC	2 cut(s)	775, 992
HinP1I	GCGC	2 cut(s)	775, 992
HindIII	AAGCTT	1 cut(s)	1221
HinfI	GANTC	6 cut(s)	59, 485, 575, 734, 810, 1148
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	4 cut(s)	101, 375, 832, 1096
Hpy166II	GTNNAC	2 cut(s)	612, 1087
Hpy188I	TCNGA	8 cut(s)	295, 312, 411, 494, 739, 809, 1135, 1265
Hpy188III	TCNNGA	2 cut(s)	56, 572
Hpy8I	GTNNAC	2 cut(s)	612, 1087
Hpy99I	CGWCG	1 cut(s)	710
HpyAV	CCTTC	2 cut(s)	45, 827
HpyCH4III	ACNGT	4 cut(s)	107, 299, 898, 1009
HpyCH4IV	ACGT	4 cut(s)	9, 173, 564, 1161
HpyF10VI	GCNNNNNNNGC	3 cut(s)	356, 402, 1246
HpySE526I	ACGT	4 cut(s)	9, 173, 564, 1161
Hsp92II	CATG	6 cut(s)	522, 559, 582, 1028, 1041, 1201
HspAI	GCGC	2 cut(s)	775, 992
KpnI	GGTACC	1 cut(s)	141
Kzo9I	GATC	3 cut(s)	351, 427, 1234
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	2 cut(s)	28, 296
Lsp1109I	GCAGC	3 cut(s)	980, 1084, 1104
LweI	GCATC	2 cut(s)	387, 577
MaeI	CTAG	3 cut(s)	63, 167, 1187
MaeII	ACGT	4 cut(s)	9, 173, 564, 1161
MaeIII	GTNAC	6 cut(s)	65, 107, 838, 856, 1003, 1139
MalI	GATC	3 cut(s)	353, 429, 1236
MboI	GATC	3 cut(s)	351, 427, 1234
MboII	GAAGA	8 cut(s)	44, 134, 137, 195, 251, 544, 805, 1194
MfeI	CAATTG	1 cut(s)	930
MhlI	GDGCHC	4 cut(s)	330, 344, 375, 514
MluCI	AATT	3 cut(s)	685, 930, 978
MlyI	GAGTC	1 cut(s)	1157
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	8 cut(s)	19, 60, 167, 405, 428, 538, 1087, 1260
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	3 cut(s)	315, 480, 1031
MslI	CAYNNNNRTG	3 cut(s)	251, 517, 583
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	3 cut(s)	113, 229, 356
MunI	CAATTG	1 cut(s)	930
Mva1269I	GAATGC	1 cut(s)	405
MvaI	CCWGG	3 cut(s)	113, 229, 356
MwoI	GCNNNNNNNGC	3 cut(s)	356, 402, 1246
NdeII	GATC	3 cut(s)	351, 427, 1234
NheI	GCTAGC	1 cut(s)	1186
NlaIII	CATG	6 cut(s)	522, 559, 582, 1028, 1041, 1201
NlaIV	GGNNCC	4 cut(s)	30, 139, 416, 806
NmuCI	GTSAC	5 cut(s)	107, 838, 856, 1003, 1139
NspI	RCATGY	3 cut(s)	1028, 1041, 1201
NspV	TTCGAA	1 cut(s)	457
PaeI	GCATGC	1 cut(s)	1028
PciI	ACATGT	1 cut(s)	1197
PciSI	GCTCTTC	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PctI	GAATGC	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	5 cut(s)	59, 485, 575, 734, 810
PflMI	CCANNNNNTGG	1 cut(s)	1020
PfoI	TCCNGGA	1 cut(s)	227
PkrI	GCNGC	6 cut(s)	361, 440, 911, 970, 1099, 1119
Ple19I	CGATCG	1 cut(s)	430
PleI	GAGTC	1 cut(s)	1156
PpsI	GAGTC	1 cut(s)	1156
Ppu21I	YACGTR	1 cut(s)	565
PscI	ACATGT	1 cut(s)	1197
PsiI	TTATAA	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	330
Psp1406I	AACGTT	1 cut(s)	173
Psp6I	CCWGG	3 cut(s)	111, 227, 354
PspGI	CCWGG	3 cut(s)	111, 227, 354
PspN4I	GGNNCC	4 cut(s)	30, 139, 416, 806
PspPI	GGNCC	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	828
PstNI	CAGNNNCTG	1 cut(s)	1097
PvuI	CGATCG	1 cut(s)	430
RsaI	GTAC	3 cut(s)	139, 643, 1196
RsaNI	GTAC	3 cut(s)	138, 642, 1195
RseI	CAYNNNNRTG	3 cut(s)	251, 517, 583
SacI	GAGCTC	1 cut(s)	330
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	3 cut(s)	315, 480, 1031
SatI	GCNGC	6 cut(s)	360, 439, 910, 969, 1098, 1118
Sau3AI	GATC	3 cut(s)	351, 427, 1234
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	1157
ScrFI	CCNGG	3 cut(s)	113, 229, 356
SduI	GDGCHC	4 cut(s)	330, 344, 375, 514
SfaNI	GCATC	2 cut(s)	387, 577
SfcI	CTRYAG	1 cut(s)	824
SfuI	TTCGAA	1 cut(s)	457
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	3 cut(s)	251, 517, 583
SphI	GCATGC	1 cut(s)	1028
Sse9I	AATT	3 cut(s)	685, 930, 978
SsiI	CCGC	8 cut(s)	5, 117, 359, 362, 438, 553, 843, 909
SspMI	CTAG	3 cut(s)	63, 167, 1187
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	3 cut(s)	111, 227, 354
TaaI	ACNGT	4 cut(s)	107, 299, 898, 1009
TaiI	ACGT	4 cut(s)	12, 176, 567, 1164
TaqI	TCGA	6 cut(s)	57, 324, 426, 457, 705, 1151
TasI	AATT	3 cut(s)	685, 930, 978
TatI	WGTACW	1 cut(s)	641
TauI	GCSGC	3 cut(s)	362, 441, 912
TfiI	GAWTC	5 cut(s)	59, 485, 575, 734, 810
Tru1I	TTAA	3 cut(s)	315, 480, 1031
Tru9I	TTAA	3 cut(s)	315, 480, 1031
TscAI	CASTG	4 cut(s)	519, 543, 901, 1251
TseFI	GTSAC	5 cut(s)	107, 838, 856, 1003, 1139
TseI	GCWGC	3 cut(s)	968, 1097, 1117
Tsp45I	GTSAC	5 cut(s)	107, 838, 856, 1003, 1139
TspDTI	ATGAA	2 cut(s)	567, 820
TspRI	CASTG	4 cut(s)	519, 543, 901, 1251
Van91I	CCANNNNNTGG	1 cut(s)	1020
VpaK11BI	GGWCC	1 cut(s)	148
XagI	CCTNNNNNAGG	1 cut(s)	1210
XapI	RAATTY	1 cut(s)	978
XceI	RCATGY	3 cut(s)	1028, 1041, 1201
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	3 cut(s)	63, 167, 1187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.