Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026528.1

Orthogroup ID

OG0007442

Physical Location & Seq

Genomic Coordinates Forward (+)

809 .. 3450

Gene Structure 2642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026528.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

atggctgaccctcacattagaacagaggaacgcccacctctcccaccacttcccaccacccctcttctcgattccagccaaacccaccacccagaagatcaagagctcgaaatcaaagatacccagttggatcaaacccttcaaagcgtagaagactttctcactctgctgggtttcagccaatcttctctattcagctttgttctatcttggtttggttttgtagtcatcggagtcttgcttccggtgcttgttcttgtgattttcaactgttctgattgccataagtaccagattgaggggtttgagcttgttattgtaggctctcaggcgtgtttggctgctgtgtctttgctttgcttatctcacaatcttcgcaagtatggcattcggagattcttgtttgttgatcgatatactggccatatgcttcggtttcgaaacgattacatcaagcagattaagggttcttttcggttgctaatttggtggtcgctgccatgtttgctgttgaagactgtacgtgaagtcgtccgcatgctctatgtccatcatgattcatggtggctgtcagtttctattttattagcttttgttctatcatggacatatgcgagtacaatcaccctaacagccagcattttgtttcatttggtctgcaatttgcaagtaatccacttcgaggattatgggaggctcttggaaagggaatctgatgttttggtatttatggaggagcacattcggctacggtatcatctctctaaaataagccacaggttccggatcttcctacttctgcagttcttggttgtcacagcaagccagtttgtgactctatttgaggtcactggatacagtggaaagatcacggtcattaatggtggcgattttgcggtctccacaattgttcaggtagttgggattattatttccttgcatgcagcgaccagaatttctcatagagcccaggccttagcatcacttgccagtagatggcatgcattagtaacatgtagttctaatgattcatctcagcaaagaaattcaaacggtatggggaactctgaggctgcaaactcaattaactcactgcatctctcttactctgagagtgatttggagtcatgtgattatcatgtttcaatgcctacaaatacacagctggcttcatatatgtcctcatatcacaggagacaagcttttgtaatgtatttgcaaactaatgctggagggatcacaatatttggatggacagttgatagagcccttctcaacacaatcttcttcatcgaactatctttgattacctttgtgcttggcaaaacaatagttttctcatcgacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3537

Protein Analysis

449

Amino Acids

51.01

Weight (kDa)

6.67

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67570 AT1G67570
fragaria_vesca	FvH4_4g24190 FvH4_4g24190 FvH4_4g24190
malus_domestica	MD13G1113500.v1.1 MD13G1113900.v1.1 MD16G1112800.v1.1 MD16G1113100.v1.1
prunus_persica	Prupe.1G232600_v2.0.a1
pyrus_communis	pycom13g09910 pycom16g09560 pycom16g09600
rosa_chinensis	RchiOBHm_Chr4g0431031
rosa_laevigata	RLG00000006933
rosa_multiflora	Rmu_sc0013571.1_g000001 Rmu_sc0026528.1_g000001 Rmu_sc0026529.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372650
rosa_rugosa	Rorug04G0247500
rosa_samantha	Rh4AG304300 Rh4BG311500 Rh4CG327800 Rh4DG307900
rosa_wichuraiana	Rw4G026420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	996
AccIII	TCCGGA	1 cut(s)	783
AciI	CCGC	2 cut(s)	535, 896
AclWI	GGATC	3 cut(s)	138, 794, 1244
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	2 cut(s)	954, 1045
AfaI	GTAC	3 cut(s)	290, 522, 619
AfiI	CCNNNNNNNGG	3 cut(s)	298, 682, 996
AflIII	ACRYGT	1 cut(s)	1013
AgsI	TTSAA	5 cut(s)	143, 268, 514, 1050, 1146
AjnI	CCWGG	1 cut(s)	969
AluBI	AGCT	6 cut(s)	106, 198, 310, 590, 1165, 1202
AluI	AGCT	6 cut(s)	106, 198, 310, 590, 1165, 1202
Alw21I	GWGCWC	2 cut(s)	108, 741
Alw26I	GTCTC	2 cut(s)	904, 1189
AlwI	GGATC	3 cut(s)	138, 794, 1244
Aor13HI	TCCGGA	1 cut(s)	783
AoxI	GGCC	2 cut(s)	421, 972
ApeKI	GCWGC	4 cut(s)	341, 496, 944, 1073
ApoI	RAATTY	2 cut(s)	954, 1045
AseI	ATTAAT	1 cut(s)	879
Asp700I	GAANNNNTTC	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	616
AsuII	TTCGAA	1 cut(s)	439
BalI	TGGCCA	1 cut(s)	423
BanII	GRGCYC	3 cut(s)	108, 970, 1270
BbsI	GAAGAC	2 cut(s)	159, 521
Bbv12I	GWGCWC	2 cut(s)	108, 741
BbvI	GCAGC	4 cut(s)	328, 483, 956, 1060
BccI	CCATC	3 cut(s)	558, 990, 1245
BciT130I	CCWGG	1 cut(s)	971
BciVI	GTATCC	1 cut(s)	848
BcoDI	GTCTC	2 cut(s)	904, 1189
BfmI	CTRYAG	1 cut(s)	800
BfuI	GTATCC	1 cut(s)	848
BisI	GCNGC	4 cut(s)	342, 497, 945, 1074
BlsI	GCNGC	4 cut(s)	343, 498, 946, 1075
Bme1390I	CCNGG	1 cut(s)	971
BmiI	GGNNCC	1 cut(s)	782
BmrFI	CCNGG	1 cut(s)	971
BmrI	ACTGGG	1 cut(s)	118
BmsI	GCATC	2 cut(s)	989, 1105
BmuI	ACTGGG	1 cut(s)	118
BpiI	GAAGAC	2 cut(s)	159, 521
BplI	GAGNNNNNCTC	2 cut(s)	1257, 1289
BpmI	CTGGAG	1 cut(s)	1251
Bpu10I	CCTNAGC	1 cut(s)	976
Bpu14I	TTCGAA	1 cut(s)	439
Bsa29I	ATCGAT	1 cut(s)	412
BsaAI	YACGTR	1 cut(s)	524
BsaI	GGTCTC	1 cut(s)	904
BsaJI	CCNNGG	1 cut(s)	969
BsaWI	WCCGGW	2 cut(s)	244, 783
Bsc4I	CCNNNNNNNGG	3 cut(s)	298, 682, 996
Bse1I	ACTGG	5 cut(s)	124, 424, 826, 856, 990
BseAI	TCCGGA	1 cut(s)	783
BseBI	CCWGG	1 cut(s)	971
BseCI	ATCGAT	1 cut(s)	412
BseDI	CCNNGG	1 cut(s)	969
BseGI	GGATG	1 cut(s)	1256
BseLI	CCNNNNNNNGG	3 cut(s)	298, 682, 996
BseMII	CTCAG	4 cut(s)	341, 1049, 1059, 1101
BseNI	ACTGG	5 cut(s)	124, 424, 826, 856, 990
BseRI	GAGGAG	1 cut(s)	749
BseXI	GCAGC	4 cut(s)	328, 483, 956, 1060
BseYI	CCCAGC	1 cut(s)	169
BshFI	GGCC	2 cut(s)	423, 974
BshVI	ATCGAT	1 cut(s)	412
BsiHKAI	GWGCWC	2 cut(s)	108, 741
BsiSI	CCGG	2 cut(s)	245, 784
BslI	CCNNNNNNNGG	3 cut(s)	298, 682, 996
BsmAI	GTCTC	2 cut(s)	904, 1189
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	423, 974
Bso31I	GGTCTC	1 cut(s)	904
Bsp119I	TTCGAA	1 cut(s)	439
Bsp1286I	GDGCHC	4 cut(s)	108, 741, 970, 1270
Bsp13I	TCCGGA	1 cut(s)	783
Bsp143I	GATC	6 cut(s)	97, 130, 409, 786, 867, 1236
BspACI	CCGC	2 cut(s)	535, 896
BspANI	GGCC	2 cut(s)	423, 974
BspCNI	CTCAG	4 cut(s)	340, 1048, 1060, 1102
BspDI	ATCGAT	1 cut(s)	412
BspEI	TCCGGA	1 cut(s)	783
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	782
BspMAI	CTGCAG	1 cut(s)	804
BspPI	GGATC	3 cut(s)	138, 794, 1244
BspT104I	TTCGAA	1 cut(s)	439
BspTNI	GGTCTC	1 cut(s)	904
BsrI	ACTGG	5 cut(s)	124, 424, 826, 856, 990
BssECI	CCNNGG	1 cut(s)	969
BssMI	GATC	6 cut(s)	97, 130, 409, 786, 867, 1236
Bst2UI	CCWGG	1 cut(s)	971
Bst4CI	ACNGT	7 cut(s)	272, 520, 753, 860, 874, 1055, 1258
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	986
BstBAI	YACGTR	1 cut(s)	524
BstBI	TTCGAA	1 cut(s)	439
BstC8I	GCNNGC	6 cut(s)	539, 637, 823, 942, 1002, 1167
BstDEI	CTNAG	5 cut(s)	327, 976, 1035, 1068, 1110
BstF5I	GGATG	1 cut(s)	1256
BstKTI	GATC	6 cut(s)	100, 133, 412, 789, 870, 1239
BstMAI	GTCTC	2 cut(s)	904, 1189
BstMBI	GATC	6 cut(s)	97, 130, 409, 786, 867, 1236
BstMWI	GCNNNNNNNGC	6 cut(s)	247, 338, 384, 505, 745, 986
BstNI	CCWGG	1 cut(s)	971
BstNSI	RCATGY	4 cut(s)	541, 944, 1004, 1017
BstSCI	CCNGG	1 cut(s)	969
BstSFI	CTRYAG	1 cut(s)	800
BstV1I	GCAGC	4 cut(s)	328, 483, 956, 1060
BstV2I	GAAGAC	2 cut(s)	159, 521
BstX2I	RGATCY	1 cut(s)	786
BstYI	RGATCY	1 cut(s)	786
Bsu15I	ATCGAT	1 cut(s)	412
BsuI	GTATCC	1 cut(s)	848
BsuRI	GGCC	2 cut(s)	423, 974
BsuTUI	ATCGAT	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	1256
BtsI	GCAGTG	1 cut(s)	1091
BtsIMutI	CAGTG	3 cut(s)	849, 865, 1091
Cac8I	GCNNGC	6 cut(s)	539, 637, 823, 942, 1002, 1167
CciI	TCATGA	1 cut(s)	553
ClaI	ATCGAT	1 cut(s)	412
Csp6I	GTAC	3 cut(s)	289, 521, 618
CviQI	GTAC	3 cut(s)	289, 521, 618
DdeI	CTNAG	5 cut(s)	327, 976, 1035, 1068, 1110
DpnI	GATC	6 cut(s)	99, 132, 411, 788, 869, 1238
DpnII	GATC	6 cut(s)	97, 130, 409, 786, 867, 1236
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	106
Eco147I	AGGCCT	1 cut(s)	974
Eco24I	GRGCYC	3 cut(s)	108, 970, 1270
Eco31I	GGTCTC	1 cut(s)	904
Eco53kI	GAGCTC	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	969
EcoT22I	ATGCAT	1 cut(s)	1006
EcoT38I	GRGCYC	3 cut(s)	108, 970, 1270
FauNDI	CATATG	2 cut(s)	426, 610
Fnu4HI	GCNGC	4 cut(s)	342, 497, 945, 1074
FokI	GGATG	1 cut(s)	1263
FriOI	GRGCYC	3 cut(s)	108, 970, 1270
Fsp4HI	GCNGC	4 cut(s)	342, 497, 945, 1074
GluI	GCNGC	4 cut(s)	342, 497, 945, 1074
GsaI	CCCAGC	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	1251
HaeIII	GGCC	2 cut(s)	423, 974
HapII	CCGG	2 cut(s)	245, 784
HindIII	AAGCTT	1 cut(s)	1200
HinfI	GANTC	8 cut(s)	71, 234, 396, 557, 710, 835, 1028, 1124
HpaII	CCGG	2 cut(s)	245, 784
HphI	GGTGA	1 cut(s)	616
Hpy188I	TCNGA	6 cut(s)	233, 277, 393, 715, 1069, 1111
Hpy188III	TCNNGA	4 cut(s)	68, 101, 554, 784
HpyAV	CCTTC	2 cut(s)	149, 1280
HpyCH4III	ACNGT	7 cut(s)	272, 520, 753, 860, 874, 1055, 1258
HpyCH4IV	ACGT	1 cut(s)	523
HpyCH4V	TGCA	9 cut(s)	660, 667, 802, 940, 944, 1004, 1076, 1096, 1219
HpyF10VI	GCNNNNNNNGC	6 cut(s)	247, 338, 384, 505, 745, 986
HpyF3I	CTNAG	5 cut(s)	327, 976, 1035, 1068, 1110
HpySE526I	ACGT	1 cut(s)	523
Kpn2I	TCCGGA	1 cut(s)	783
Kzo9I	GATC	6 cut(s)	97, 130, 409, 786, 867, 1236
LmnI	GCTCC	1 cut(s)	736
Lsp1109I	GCAGC	4 cut(s)	328, 483, 956, 1060
LweI	GCATC	2 cut(s)	989, 1105
MaeII	ACGT	1 cut(s)	523
MaeIII	GTNAC	4 cut(s)	814, 832, 847, 1009
MalI	GATC	6 cut(s)	99, 132, 411, 788, 869, 1238
MboI	GATC	6 cut(s)	97, 130, 409, 786, 867, 1236
MboII	GAAGA	9 cut(s)	56, 107, 164, 177, 365, 526, 781, 1276, 1279
MfeI	CAATTG	1 cut(s)	906
MflI	RGATCY	1 cut(s)	786
MhlI	GDGCHC	4 cut(s)	108, 741, 970, 1270
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	6 cut(s)	483, 661, 906, 954, 1045, 1083
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	3 cut(s)	243, 829, 1133
MmeI	TCCRAC	1 cut(s)	108
Mox20I	TGGCCA	1 cut(s)	423
Mph1103I	ATGCAT	1 cut(s)	1006
MroI	TCCGGA	1 cut(s)	783
MroXI	GAANNNNTTC	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	3 cut(s)	462, 879, 1086
Msp20I	TGGCCA	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	1165
MspI	CCGG	2 cut(s)	245, 784
MspR9I	CCNGG	1 cut(s)	971
MunI	CAATTG	1 cut(s)	906
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	971
MwoI	GCNNNNNNNGC	6 cut(s)	247, 338, 384, 505, 745, 986
NdeI	CATATG	2 cut(s)	426, 610
NdeII	GATC	6 cut(s)	97, 130, 409, 786, 867, 1236
NlaIV	GGNNCC	1 cut(s)	782
NmuCI	GTSAC	3 cut(s)	814, 832, 847
NsiI	ATGCAT	1 cut(s)	1006
NspI	RCATGY	4 cut(s)	541, 944, 1004, 1017
NspV	TTCGAA	1 cut(s)	439
PaeI	GCATGC	3 cut(s)	541, 944, 1004
PagI	TCATGA	1 cut(s)	553
PceI	AGGCCT	1 cut(s)	974
PciI	ACATGT	1 cut(s)	1013
PctI	GAATGC	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	5 cut(s)	71, 396, 557, 710, 1028
PflMI	CCANNNNNTGG	1 cut(s)	996
PkrI	GCNGC	4 cut(s)	343, 498, 946, 1075
PleI	GAGTC	3 cut(s)	242, 829, 1132
PpsI	GAGTC	3 cut(s)	242, 829, 1132
Ppu21I	YACGTR	1 cut(s)	524
PscI	ACATGT	1 cut(s)	1013
PshBI	ATTAAT	1 cut(s)	879
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	969
PspFI	CCCAGC	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	969
PspN4I	GGNNCC	1 cut(s)	782
PstI	CTGCAG	1 cut(s)	804
PsuI	RGATCY	1 cut(s)	786
PvuII	CAGCTG	1 cut(s)	1165
RsaI	GTAC	3 cut(s)	290, 522, 619
RsaNI	GTAC	3 cut(s)	289, 521, 618
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	3 cut(s)	462, 879, 1086
SatI	GCNGC	4 cut(s)	342, 497, 945, 1074
Sau3AI	GATC	6 cut(s)	97, 130, 409, 786, 867, 1236
SchI	GAGTC	3 cut(s)	243, 829, 1133
ScrFI	CCNGG	1 cut(s)	971
SduI	GDGCHC	4 cut(s)	108, 741, 970, 1270
SfaNI	GCATC	2 cut(s)	989, 1105
SfcI	CTRYAG	1 cut(s)	800
SfuI	TTCGAA	1 cut(s)	439
SphI	GCATGC	3 cut(s)	541, 944, 1004
Sse9I	AATT	6 cut(s)	483, 661, 906, 954, 1045, 1083
SseBI	AGGCCT	1 cut(s)	974
SsiI	CCGC	2 cut(s)	535, 896
SspI	AATATT	1 cut(s)	1245
SstI	GAGCTC	1 cut(s)	108
StuI	AGGCCT	1 cut(s)	974
StyD4I	CCNGG	1 cut(s)	969
TaaI	ACNGT	7 cut(s)	272, 520, 753, 860, 874, 1055, 1258
TaiI	ACGT	1 cut(s)	526
TaqI	TCGA	7 cut(s)	69, 108, 412, 439, 681, 1293, 1343
TasI	AATT	6 cut(s)	483, 661, 906, 954, 1045, 1083
TatI	WGTACW	1 cut(s)	617
TfiI	GAWTC	5 cut(s)	71, 396, 557, 710, 1028
Tru1I	TTAA	3 cut(s)	462, 879, 1086
Tru9I	TTAA	3 cut(s)	462, 879, 1086
TscAI	CASTG	3 cut(s)	856, 865, 1098
TseFI	GTSAC	3 cut(s)	814, 832, 847
TseI	GCWGC	4 cut(s)	341, 496, 944, 1073
Tsp45I	GTSAC	3 cut(s)	814, 832, 847
TspDTI	ATGAA	5 cut(s)	549, 638, 1020, 1161, 1279
TspRI	CASTG	3 cut(s)	856, 865, 1098
Van91I	CCANNNNNTGG	1 cut(s)	996
VspI	ATTAAT	1 cut(s)	879
XapI	RAATTY	2 cut(s)	954, 1045
XceI	RCATGY	4 cut(s)	541, 944, 1004, 1017
XmnI	GAANNNNTTC	1 cut(s)	156
Zsp2I	ATGCAT	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.