Rh4DG307900

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0007442
Physical Location & Seq
Forward (+)
52986895 .. 52990202
3308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG307900.1

Sequence Viewer

Length: 1131 bp
ATGGCTGACCCTCACATTAGAACAGAGGAACGCCCACCTCTCCCACCACTTCCCACCACCCCTCTTCTCGATTCCAGCCAAACCCACCACCCAGAAGATCAAGAGCTCGAAATCAAAGATACCCAGTTGGATCAAACCCTTCAAAGCGTAGAAGACTTTCTCACTCTGCTGGGTTTCAGCCAATCTTCTCTATTCAGCTTTGTTCTATCTTGGTTTGGTTTTGTAGTCATCGGAGTCTTGCTTCCGGTGCTTGTTCTTGTGATTTTCAACTGTTCTGATTGCGATAAGTACCAGATTGAGGGGTTTGAGCTTGTTATTGTAGGCTCTCAGGCGTGTTTGGCTGCTGTGTCTTTGCTTTGCTTATCTCACAATCTTCGCAAGTATGGCATTCGGAGATTCTTGTTTGTTGATCGATATACTGGCCATATGGTTCGGTTTCGAAACGATTACATCAAGCAGATAAAGGGTTCTTTTCGGTTGCTAATTTGGTGGTCGCTGCCATGTTTTCTGTTGAAGACTGTACGTGAAGTCGTCCGCATGCTCTATGTCCATCATGATTCATGGTGGCTGTCATTTTCTATTTTATTAGCTTTTGTTCTATCATGGACATATGCGAGTACAATGACCCTCACTGCCAGCATTTTGTTTCATTTGGTCTGCAATTTGCAAGTAATCCACTTTGAGGATTATGGGAGGCTCTTGGAAAGGGAATCTGATGTTTTGGTATTTATGGAGGAGCACATTCGGCTACGGTATCACCTCTCTAAAATAAGCCACAGGTTCCGGATCTTCCTACTTCTGCAGTTCTTGGTTGTCACAGCAAGCCAGTTTGTGACTCTATTTGAGGTCACTGGATACAGTGGAAAGATCACGGTCATTAATGGTGGCGATTTTGCAGTAAGTTCAGATATTTTGGTACTTCACATGCTTGTTGTGTATCTCTTTGCAGTAGATTCAGAACCACTATGGCTTCCAGACACCAGACTACTCTCCAATTATCATTGCTCATTTGTTAAAATTTTAGGCATTAATTTCCTTGCTTTTGTTTTCCCCAAATTTCCAGGTCTCCACAATTGTTCAGGTAGTTGGGATTATTATTTCCTTGCATGCAGCGACCAGAATTTCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

376

Amino Acids

43.48

Weight (kDa)

6.09

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 46 - 312 3.2e-97 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 783
AciI CCGC 1 cut(s) 535
AclWI GGATC 2 cut(s) 138, 794
AcoI YGGCCR 1 cut(s) 421
AcsI RAATTY 3 cut(s) 1017, 1055, 1120
AfaI GTAC 4 cut(s) 290, 522, 619, 918
AfiI CCNNNNNNNGG 2 cut(s) 298, 682
AgsI TTSAA 3 cut(s) 143, 268, 514
AjnI CCWGG 1 cut(s) 1060
AluBI AGCT 4 cut(s) 106, 198, 310, 590
AluI AGCT 4 cut(s) 106, 198, 310, 590
Alw21I GWGCWC 2 cut(s) 108, 741
Alw26I GTCTC 1 cut(s) 1070
AlwI GGATC 2 cut(s) 138, 794
Aor13HI TCCGGA 1 cut(s) 783
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 3 cut(s) 341, 496, 1110
ApoI RAATTY 3 cut(s) 1017, 1055, 1120
AseI ATTAAT 2 cut(s) 879, 1029
Asp700I GAANNNNTTC 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 749
AsuII TTCGAA 1 cut(s) 439
BalI TGGCCA 1 cut(s) 423
BanII GRGCYC 1 cut(s) 108
BbsI GAAGAC 2 cut(s) 159, 521
Bbv12I GWGCWC 2 cut(s) 108, 741
BbvI GCAGC 3 cut(s) 328, 483, 1122
BccI CCATC 1 cut(s) 558
BciT130I CCWGG 1 cut(s) 1062
BciVI GTATCC 1 cut(s) 848
BcoDI GTCTC 1 cut(s) 1070
BfmI CTRYAG 1 cut(s) 800
BfuI GTATCC 1 cut(s) 848
BisI GCNGC 3 cut(s) 342, 497, 1111
BlsI GCNGC 3 cut(s) 343, 498, 1112
Bme1390I CCNGG 1 cut(s) 1062
BmiI GGNNCC 1 cut(s) 782
BmrFI CCNGG 1 cut(s) 1062
BmrI ACTGGG 1 cut(s) 118
BmuI ACTGGG 1 cut(s) 118
BpiI GAAGAC 2 cut(s) 159, 521
Bpu14I TTCGAA 1 cut(s) 439
Bsa29I ATCGAT 1 cut(s) 412
BsaAI YACGTR 1 cut(s) 524
BsaI GGTCTC 1 cut(s) 1070
BsaWI WCCGGW 2 cut(s) 244, 783
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 682
Bse1I ACTGG 4 cut(s) 124, 424, 826, 856
Bse3DI GCAATG 1 cut(s) 1000
BseAI TCCGGA 1 cut(s) 783
BseBI CCWGG 1 cut(s) 1062
BseCI ATCGAT 1 cut(s) 412
BseLI CCNNNNNNNGG 2 cut(s) 298, 682
BseMI GCAATG 1 cut(s) 1000
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 4 cut(s) 124, 424, 826, 856
BseRI GAGGAG 1 cut(s) 749
BseXI GCAGC 3 cut(s) 328, 483, 1122
BseYI CCCAGC 1 cut(s) 169
BshFI GGCC 1 cut(s) 423
BshVI ATCGAT 1 cut(s) 412
BsiHKAI GWGCWC 2 cut(s) 108, 741
BsiSI CCGG 2 cut(s) 245, 784
BslI CCNNNNNNNGG 2 cut(s) 298, 682
BsmAI GTCTC 1 cut(s) 1070
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 1 cut(s) 423
Bso31I GGTCTC 1 cut(s) 1070
Bsp119I TTCGAA 1 cut(s) 439
Bsp1286I GDGCHC 2 cut(s) 108, 741
Bsp13I TCCGGA 1 cut(s) 783
Bsp143I GATC 5 cut(s) 97, 130, 409, 786, 867
BspACI CCGC 1 cut(s) 535
BspANI GGCC 1 cut(s) 423
BspCNI CTCAG 1 cut(s) 340
BspDI ATCGAT 1 cut(s) 412
BspEI TCCGGA 1 cut(s) 783
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 1 cut(s) 782
BspMAI CTGCAG 1 cut(s) 804
BspPI GGATC 2 cut(s) 138, 794
BspT104I TTCGAA 1 cut(s) 439
BspTNI GGTCTC 1 cut(s) 1070
BsrDI GCAATG 1 cut(s) 1000
BsrI ACTGG 4 cut(s) 124, 424, 826, 856
BssMI GATC 5 cut(s) 97, 130, 409, 786, 867
Bst2UI CCWGG 1 cut(s) 1062
Bst4CI ACNGT 5 cut(s) 272, 520, 753, 860, 874
Bst6I CTCTTC 1 cut(s) 69
BstBAI YACGTR 1 cut(s) 524
BstBI TTCGAA 1 cut(s) 439
BstC8I GCNNGC 4 cut(s) 539, 637, 823, 1108
BstDEI CTNAG 1 cut(s) 327
BstKTI GATC 5 cut(s) 100, 133, 412, 789, 870
BstMAI GTCTC 1 cut(s) 1070
BstMBI GATC 5 cut(s) 97, 130, 409, 786, 867
BstMWI GCNNNNNNNGC 4 cut(s) 247, 338, 384, 745
BstNI CCWGG 1 cut(s) 1062
BstNSI RCATGY 3 cut(s) 541, 928, 1110
BstSCI CCNGG 1 cut(s) 1060
BstSFI CTRYAG 1 cut(s) 800
BstV1I GCAGC 3 cut(s) 328, 483, 1122
BstV2I GAAGAC 2 cut(s) 159, 521
BstX2I RGATCY 1 cut(s) 786
BstYI RGATCY 1 cut(s) 786
Bsu15I ATCGAT 1 cut(s) 412
BsuI GTATCC 1 cut(s) 848
BsuRI GGCC 1 cut(s) 423
BsuTUI ATCGAT 1 cut(s) 412
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 3 cut(s) 630, 849, 865
Cac8I GCNNGC 4 cut(s) 539, 637, 823, 1108
CciI TCATGA 1 cut(s) 553
ClaI ATCGAT 1 cut(s) 412
Csp6I GTAC 4 cut(s) 289, 521, 618, 917
CviAII CATG 7 cut(s) 501, 538, 554, 561, 603, 925, 1107
CviQI GTAC 4 cut(s) 289, 521, 618, 917
DdeI CTNAG 1 cut(s) 327
DpnI GATC 5 cut(s) 99, 132, 411, 788, 869
DpnII GATC 5 cut(s) 97, 130, 409, 786, 867
EaeI YGGCCR 1 cut(s) 421
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 1070
Eco53kI GAGCTC 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 1060
EcoT38I GRGCYC 1 cut(s) 108
FaeI CATG 7 cut(s) 504, 541, 557, 564, 606, 928, 1110
FatI CATG 7 cut(s) 500, 537, 553, 560, 602, 924, 1106
FauNDI CATATG 2 cut(s) 426, 610
Fnu4HI GCNGC 3 cut(s) 342, 497, 1111
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 3 cut(s) 342, 497, 1111
GluI GCNGC 3 cut(s) 342, 497, 1111
GsaI CCCAGC 1 cut(s) 173
HaeIII GGCC 1 cut(s) 423
HapII CCGG 2 cut(s) 245, 784
Hin1II CATG 7 cut(s) 504, 541, 557, 564, 606, 928, 1110
HinfI GANTC 7 cut(s) 71, 234, 396, 557, 710, 835, 953
HpaII CCGG 2 cut(s) 245, 784
HphI GGTGA 1 cut(s) 749
Hpy188I TCNGA 6 cut(s) 233, 277, 393, 715, 907, 958
Hpy188III TCNNGA 5 cut(s) 68, 101, 554, 784, 974
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 5 cut(s) 272, 520, 753, 860, 874
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 7 cut(s) 660, 667, 802, 896, 947, 1106, 1110
HpyF10VI GCNNNNNNNGC 4 cut(s) 247, 338, 384, 745
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 1 cut(s) 523
Hsp92II CATG 7 cut(s) 504, 541, 557, 564, 606, 928, 1110
Kpn2I TCCGGA 1 cut(s) 783
Kzo9I GATC 5 cut(s) 97, 130, 409, 786, 867
LmnI GCTCC 1 cut(s) 736
Lsp1109I GCAGC 3 cut(s) 328, 483, 1122
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 3 cut(s) 814, 832, 847
MalI GATC 5 cut(s) 99, 132, 411, 788, 869
MboI GATC 5 cut(s) 97, 130, 409, 786, 867
MboII GAAGA 7 cut(s) 56, 107, 164, 177, 365, 526, 781
MfeI CAATTG 1 cut(s) 1072
MflI RGATCY 1 cut(s) 786
MhlI GDGCHC 2 cut(s) 108, 741
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 8 cut(s) 483, 661, 994, 1017, 1030, 1055, 1072, 1120
MluNI TGGCCA 1 cut(s) 423
MlyI GAGTC 2 cut(s) 243, 829
MmeI TCCRAC 1 cut(s) 108
Mox20I TGGCCA 1 cut(s) 423
MroI TCCGGA 1 cut(s) 783
MroXI GAANNNNTTC 1 cut(s) 156
MscI TGGCCA 1 cut(s) 423
MseI TTAA 3 cut(s) 879, 1014, 1029
Msp20I TGGCCA 1 cut(s) 423
MspI CCGG 2 cut(s) 245, 784
MspR9I CCNGG 1 cut(s) 1062
MunI CAATTG 1 cut(s) 1072
Mva1269I GAATGC 1 cut(s) 387
MvaI CCWGG 1 cut(s) 1062
MwoI GCNNNNNNNGC 4 cut(s) 247, 338, 384, 745
NdeI CATATG 2 cut(s) 426, 610
NdeII GATC 5 cut(s) 97, 130, 409, 786, 867
NlaIII CATG 7 cut(s) 504, 541, 557, 564, 606, 928, 1110
NlaIV GGNNCC 1 cut(s) 782
NmuCI GTSAC 3 cut(s) 814, 832, 847
NspI RCATGY 3 cut(s) 541, 928, 1110
NspV TTCGAA 1 cut(s) 439
PaeI GCATGC 2 cut(s) 541, 1110
PagI TCATGA 1 cut(s) 553
PctI GAATGC 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 5 cut(s) 71, 396, 557, 710, 953
PkrI GCNGC 3 cut(s) 343, 498, 1112
PleI GAGTC 2 cut(s) 242, 829
PpsI GAGTC 2 cut(s) 242, 829
Ppu21I YACGTR 1 cut(s) 524
PshBI ATTAAT 2 cut(s) 879, 1029
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 1060
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 1 cut(s) 1060
PspN4I GGNNCC 1 cut(s) 782
PstI CTGCAG 1 cut(s) 804
PsuI RGATCY 1 cut(s) 786
RsaI GTAC 4 cut(s) 290, 522, 619, 918
RsaNI GTAC 4 cut(s) 289, 521, 618, 917
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 3 cut(s) 879, 1014, 1029
SatI GCNGC 3 cut(s) 342, 497, 1111
Sau3AI GATC 5 cut(s) 97, 130, 409, 786, 867
SchI GAGTC 2 cut(s) 243, 829
ScrFI CCNGG 1 cut(s) 1062
SduI GDGCHC 2 cut(s) 108, 741
SfcI CTRYAG 1 cut(s) 800
SfuI TTCGAA 1 cut(s) 439
SphI GCATGC 2 cut(s) 541, 1110
Sse9I AATT 8 cut(s) 483, 661, 994, 1017, 1030, 1055, 1072, 1120
SsiI CCGC 1 cut(s) 535
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 1060
TaaI ACNGT 5 cut(s) 272, 520, 753, 860, 874
TaiI ACGT 1 cut(s) 526
TaqI TCGA 4 cut(s) 69, 108, 412, 439
TasI AATT 8 cut(s) 483, 661, 994, 1017, 1030, 1055, 1072, 1120
TatI WGTACW 1 cut(s) 617
TfiI GAWTC 5 cut(s) 71, 396, 557, 710, 953
Tru1I TTAA 3 cut(s) 879, 1014, 1029
Tru9I TTAA 3 cut(s) 879, 1014, 1029
TscAI CASTG 3 cut(s) 637, 856, 865
TseFI GTSAC 3 cut(s) 814, 832, 847
TseI GCWGC 3 cut(s) 341, 496, 1110
Tsp45I GTSAC 3 cut(s) 814, 832, 847
TspDTI ATGAA 2 cut(s) 549, 638
TspRI CASTG 3 cut(s) 637, 856, 865
VspI ATTAAT 2 cut(s) 879, 1029
XapI RAATTY 3 cut(s) 1017, 1055, 1120
XceI RCATGY 3 cut(s) 541, 928, 1110
XmnI GAANNNNTTC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.