Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007442

Physical Location & Seq

Genomic Coordinates Reverse (-)

6403289 .. 6407489

Gene Structure 4201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g09600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCGGACCCTCTAAAAGGAGAGGATCCGCCTTCCCAACTCACCCTTCTTCTCGATTCAAATCACAACAACGGTCACCAAGCACCAGAAGGAGAATGCAAAGATACCCAATTGGACCAGACCCTCCAACGGCTAGAAACGTTTCTCACTCTATTGGGCTTCAGTCAATCTTCTTGGTTGAGGTTTGCGCTGTCCTGGACTGCTCTGGTTCTTCTCGGTGTTGTTCTCCCGGTGGTGGTGCTAGAGATATTCAACTGTTCGGACTGCGACAAGTATCAGATTAAATGGTTCGAGCTCACTATCGTGGCATCGCAGGCGGTTCTGGCGGCGGTCTCTTTGCTCTGCATCTCTCACTGTCTTCGCAAGTATGGCATTCGGAGGTTCCTCTTTGTTGATCGCTATAGTGGCCGTATCGTTCGGTTTCGAAACGATTACATCAAGCAGATTAAGGATTCTTTACGTCTGCTCATTTGGTGGGCACTGCCATGTTTTCTTTTGAAAACTCTGCGAGAGGTCATCCGCATGATATATGTCCGTCACGAGTCATGGTGGCTGTCATTTGCTGTATTAGTAGCTTTGGTTCTATCATGGGCTTATGTGAGTACAATCACTCTAACAGCCAGCATTTTGTTTCACTTGGTCTGCAACTTGCAAGTTATCCACTTTGATGATTATGGAAGGCTCTTTGAAAGGGATTCTAATGTGTTGCTATTTATGGAGGAGCATATTCGCCTGCGGTATCATCTCCATAAAATAAGCCATAGGTTCAGGATCTTCCTTCTTGTGCAGTTTATAATCGTCACCACAAGCCAGTTTGTGACTCTACTCGAGCTCACAATATACAGTGGAAAAATCACTGTAATAAACAGTGGCGATTTTGCAGTCTCCACAATTGTTCAGGTTGTCGGCATTACTATTTCCCTGCACGCAGCTACTAAAATTTCTGGTAGAGCCCAAGGTATAACGACAGTTGCCAGTAGATGGCATGCGTTAATGACATGCAGTTCTAACAATTCATCTCACAACAGAAGTTCAGACAGTTTGATGAACTTTGAGGCCGCCAACAGATTGAGTTCACTGCATATAAGTTACTCTGAGAGTGATTTGGAGTCAGCAGATTATGTTCACGTGCCTACAAATTCCCAGCTGGCTTCACATATGGCTTCATATCACAAGAGACAAGCTTTTGTGTACAAGGGTATATGGAGGGGGAATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3537

Protein Analysis

407

Amino Acids

46.46

Weight (kDa)

8.85

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67570 AT1G67570
fragaria_vesca	FvH4_4g24190 FvH4_4g24190 FvH4_4g24190
malus_domestica	MD13G1113500.v1.1 MD13G1113900.v1.1 MD16G1112800.v1.1 MD16G1113100.v1.1
prunus_persica	Prupe.1G232600_v2.0.a1
pyrus_communis	pycom13g09910 pycom16g09560 pycom16g09600
rosa_chinensis	RchiOBHm_Chr4g0431031
rosa_laevigata	RLG00000006933
rosa_multiflora	Rmu_sc0013571.1_g000001 Rmu_sc0026528.1_g000001 Rmu_sc0026529.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372650
rosa_rugosa	Rorug04G0247500
rosa_samantha	Rh4AG304300 Rh4BG311500 Rh4CG327800 Rh4DG307900
rosa_wichuraiana	Rw4G026420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	794
AccB7I	CCANNNNNTGG	1 cut(s)	981
AciI	CCGC	8 cut(s)	5, 29, 317, 326, 329, 520, 736, 1059
AclI	AACGTT	1 cut(s)	140
AclWI	GGATC	3 cut(s)	20, 33, 779
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	2 cut(s)	939, 1138
AcuI	CTGAAG	1 cut(s)	145
AcvI	CACGTG	1 cut(s)	1129
AfaI	GTAC	2 cut(s)	604, 1193
AfiI	CCNNNNNNNGG	4 cut(s)	17, 129, 235, 981
AgsI	TTSAA	4 cut(s)	60, 253, 499, 689
AjnI	CCWGG	1 cut(s)	194
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AleI	CACNNNNGTG	1 cut(s)	302
AluBI	AGCT	6 cut(s)	295, 575, 832, 932, 1147, 1184
AluI	AGCT	6 cut(s)	295, 575, 832, 932, 1147, 1184
Alw21I	GWGCWC	2 cut(s)	297, 834
Alw26I	GTCTC	3 cut(s)	337, 889, 1171
AlwI	GGATC	3 cut(s)	20, 33, 779
Ama87I	CYCGRG	1 cut(s)	827
AoxI	GGCC	2 cut(s)	406, 1056
ApeKI	GCWGC	1 cut(s)	929
ApoI	RAATTY	2 cut(s)	939, 1138
Asp700I	GAANNNNTTC	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	2 cut(s)	7, 115
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	3 cut(s)	34, 68, 793
AsuII	TTCGAA	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	827
AvaII	GGWCC	2 cut(s)	7, 115
BaeGI	GKGCMC	1 cut(s)	481
BamHI	GGATCC	1 cut(s)	25
BanII	GRGCYC	3 cut(s)	297, 834, 955
BauI	CACGAG	1 cut(s)	539
BbrPI	CACGTG	1 cut(s)	1129
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	2 cut(s)	297, 834
BbvI	GCAGC	1 cut(s)	941
BccI	CCATC	1 cut(s)	975
BceAI	ACGGC	2 cut(s)	146, 393
BciT130I	CCWGG	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	3 cut(s)	337, 889, 1171
BfaI	CTAG	2 cut(s)	134, 242
BfmI	CTRYAG	1 cut(s)	400
BisI	GCNGC	3 cut(s)	327, 930, 1059
BlsI	GCNGC	3 cut(s)	328, 931, 1060
Bme1390I	CCNGG	2 cut(s)	196, 230
Bme18I	GGWCC	2 cut(s)	7, 115
BmeT110I	CYCGRG	1 cut(s)	827
BmgT120I	GGNCC	2 cut(s)	7, 115
BmiI	GGNNCC	3 cut(s)	9, 27, 383
BmrFI	CCNGG	2 cut(s)	196, 230
BmsI	GCATC	2 cut(s)	317, 354
BpiI	GAAGAC	1 cut(s)	350
Bpu14I	TTCGAA	1 cut(s)	424
BpuMI	CCSGG	1 cut(s)	230
BsaAI	YACGTR	1 cut(s)	1129
BsaBI	GATNNNNATC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	955
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 129, 235, 981
Bse1I	ACTGG	2 cut(s)	811, 975
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	955
BseGI	GGATG	1 cut(s)	516
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	4 cut(s)	17, 129, 235, 981
BseMII	CTCAG	1 cut(s)	1086
BseNI	ACTGG	2 cut(s)	811, 975
BseRI	GAGGAG	1 cut(s)	734
BseSI	GKGCMC	1 cut(s)	481
BseXI	GCAGC	1 cut(s)	941
BseYI	CCCAGC	1 cut(s)	1143
BsgI	GTGCAG	2 cut(s)	806, 908
BshFI	GGCC	2 cut(s)	408, 1058
BsiHKAI	GWGCWC	2 cut(s)	297, 834
BsiHKCI	CYCGRG	1 cut(s)	827
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	4 cut(s)	17, 129, 235, 981
BsmAI	GTCTC	3 cut(s)	337, 889, 1171
BsmI	GAATGC	2 cut(s)	101, 372
BsnI	GGCC	2 cut(s)	408, 1058
Bso31I	GGTCTC	1 cut(s)	337
BsoBI	CYCGRG	1 cut(s)	827
Bsp119I	TTCGAA	1 cut(s)	424
Bsp1286I	GDGCHC	4 cut(s)	297, 481, 834, 955
Bsp1407I	TGTACA	1 cut(s)	1191
Bsp143I	GATC	3 cut(s)	25, 394, 771
BspACI	CCGC	8 cut(s)	5, 29, 317, 326, 329, 520, 736, 1059
BspANI	GGCC	2 cut(s)	408, 1058
BspCNI	CTCAG	1 cut(s)	1087
BspLI	GGNNCC	3 cut(s)	9, 27, 383
BspPI	GGATC	3 cut(s)	20, 33, 779
BspT104I	TTCGAA	1 cut(s)	424
BspTNI	GGTCTC	1 cut(s)	337
BsrGI	TGTACA	1 cut(s)	1191
BsrI	ACTGG	2 cut(s)	811, 975
BssECI	CCNNGG	1 cut(s)	955
BssMI	GATC	3 cut(s)	25, 394, 771
BssSI	CACGAG	1 cut(s)	539
BssT1I	CCWWGG	1 cut(s)	955
Bst2BI	CACGAG	1 cut(s)	539
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	8 cut(s)	74, 257, 356, 845, 859, 869, 970, 1040
BstAUI	TGTACA	1 cut(s)	1191
BstBAI	YACGTR	1 cut(s)	1129
BstBI	TTCGAA	1 cut(s)	424
BstC8I	GCNNGC	6 cut(s)	315, 622, 734, 927, 987, 1149
BstDEI	CTNAG	1 cut(s)	1095
BstEII	GGTNACC	1 cut(s)	74
BstENI	CCTNNNNNAGG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	3 cut(s)	28, 397, 774
BstMAI	GTCTC	3 cut(s)	337, 889, 1171
BstMBI	GATC	3 cut(s)	25, 394, 771
BstMWI	GCNNNNNNNGC	4 cut(s)	314, 323, 369, 405
BstNI	CCWGG	1 cut(s)	196
BstNSI	RCATGY	2 cut(s)	989, 1002
BstPI	GGTNACC	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	194, 228
BstSFI	CTRYAG	1 cut(s)	400
BstSLI	GKGCMC	1 cut(s)	481
BstV1I	GCAGC	1 cut(s)	941
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	2 cut(s)	25, 771
BstYI	RGATCY	2 cut(s)	25, 771
BsuRI	GGCC	2 cut(s)	408, 1058
BtgZI	GCGATG	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	516
BtsI	GCAGTG	2 cut(s)	479, 1076
BtsIMutI	CAGTG	6 cut(s)	352, 479, 850, 855, 874, 1076
Cac8I	GCNNGC	6 cut(s)	315, 622, 734, 927, 987, 1149
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	7, 115
Csp6I	GTAC	2 cut(s)	603, 1192
CviAII	CATG	6 cut(s)	486, 523, 546, 588, 986, 999
CviQI	GTAC	2 cut(s)	603, 1192
DdeI	CTNAG	1 cut(s)	1095
DpnI	GATC	3 cut(s)	27, 396, 773
DpnII	GATC	3 cut(s)	25, 394, 771
EaeI	YGGCCR	1 cut(s)	406
EciI	GGCGGA	2 cut(s)	18, 20
Ecl136II	GAGCTC	2 cut(s)	295, 832
Eco130I	CCWWGG	1 cut(s)	955
Eco24I	GRGCYC	3 cut(s)	297, 834, 955
Eco31I	GGTCTC	1 cut(s)	337
Eco47I	GGWCC	2 cut(s)	7, 115
Eco53kI	GAGCTC	2 cut(s)	295, 832
Eco57I	CTGAAG	1 cut(s)	145
Eco72I	CACGTG	1 cut(s)	1129
Eco88I	CYCGRG	1 cut(s)	827
Eco91I	GGTNACC	1 cut(s)	74
EcoICRI	GAGCTC	2 cut(s)	295, 832
EcoNI	CCTNNNNNAGG	1 cut(s)	15
EcoO65I	GGTNACC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	955
EcoT38I	GRGCYC	3 cut(s)	297, 834, 955
ErhI	CCWWGG	1 cut(s)	955
FaeI	CATG	6 cut(s)	489, 526, 549, 591, 989, 1002
FatI	CATG	6 cut(s)	485, 522, 545, 587, 985, 998
FauNDI	CATATG	1 cut(s)	1158
Fnu4HI	GCNGC	3 cut(s)	327, 930, 1059
FokI	GGATG	1 cut(s)	503
FriOI	GRGCYC	3 cut(s)	297, 834, 955
Fsp4HI	GCNGC	3 cut(s)	327, 930, 1059
FspBI	CTAG	2 cut(s)	134, 242
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	3 cut(s)	327, 930, 1059
GsaI	CCCAGC	1 cut(s)	1147
HaeIII	GGCC	2 cut(s)	408, 1058
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	6 cut(s)	489, 526, 549, 591, 989, 1002
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HindIII	AAGCTT	1 cut(s)	1182
HinfI	GANTC	6 cut(s)	56, 452, 542, 695, 820, 1109
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	3 cut(s)	34, 68, 793
Hpy166II	GTNNAC	3 cut(s)	1076, 1126, 1192
Hpy188I	TCNGA	5 cut(s)	262, 279, 378, 1036, 1096
Hpy188III	TCNNGA	3 cut(s)	53, 539, 769
Hpy8I	GTNNAC	3 cut(s)	1076, 1126, 1192
HpyAV	CCTTC	5 cut(s)	42, 56, 83, 672, 788
HpyCH4III	ACNGT	8 cut(s)	74, 257, 356, 845, 859, 869, 970, 1040
HpyCH4IV	ACGT	3 cut(s)	140, 460, 1128
HpyCH4V	TGCA	9 cut(s)	99, 345, 645, 652, 787, 881, 925, 1002, 1081
HpyF10VI	GCNNNNNNNGC	4 cut(s)	314, 323, 369, 405
HpyF3I	CTNAG	1 cut(s)	1095
HpySE526I	ACGT	3 cut(s)	140, 460, 1128
Hsp92II	CATG	6 cut(s)	489, 526, 549, 591, 989, 1002
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	3 cut(s)	25, 394, 771
LmnI	GCTCC	1 cut(s)	721
Lsp1109I	GCAGC	1 cut(s)	941
LweI	GCATC	2 cut(s)	317, 354
MaeI	CTAG	2 cut(s)	134, 242
MaeII	ACGT	3 cut(s)	140, 460, 1128
MaeIII	GTNAC	5 cut(s)	74, 536, 799, 817, 1088
MalI	GATC	3 cut(s)	27, 396, 773
MboI	GATC	3 cut(s)	25, 394, 771
MboII	GAAGA	5 cut(s)	41, 162, 203, 350, 766
MfeI	CAATTG	2 cut(s)	110, 891
MflI	RGATCY	2 cut(s)	25, 771
MhlI	GDGCHC	4 cut(s)	297, 481, 834, 955
MluCI	AATT	5 cut(s)	110, 891, 939, 1012, 1138
MlyI	GAGTC	3 cut(s)	551, 814, 1118
MmeI	TCCRAC	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	3 cut(s)	282, 447, 992
MslI	CAYNNNNRTG	4 cut(s)	302, 484, 521, 666
MspA1I	CMGCKG	1 cut(s)	1147
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	196, 230
MunI	CAATTG	2 cut(s)	110, 891
Mva1269I	GAATGC	2 cut(s)	101, 372
MvaI	CCWGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	4 cut(s)	314, 323, 369, 405
NciI	CCSGG	1 cut(s)	230
NdeI	CATATG	1 cut(s)	1158
NdeII	GATC	3 cut(s)	25, 394, 771
NlaIII	CATG	6 cut(s)	489, 526, 549, 591, 989, 1002
NlaIV	GGNNCC	3 cut(s)	9, 27, 383
NmuCI	GTSAC	4 cut(s)	74, 536, 799, 817
NspI	RCATGY	2 cut(s)	989, 1002
NspV	TTCGAA	1 cut(s)	424
OliI	CACNNNNGTG	1 cut(s)	302
PaeI	GCATGC	1 cut(s)	989
PaeR7I	CTCGAG	1 cut(s)	827
PctI	GAATGC	2 cut(s)	101, 372
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	3 cut(s)	56, 452, 695
PflMI	CCANNNNNTGG	1 cut(s)	981
PfoI	TCCNGGA	1 cut(s)	194
PkrI	GCNGC	3 cut(s)	328, 931, 1060
PleI	GAGTC	3 cut(s)	550, 814, 1117
PmaCI	CACGTG	1 cut(s)	1129
PmlI	CACGTG	1 cut(s)	1129
PpsI	GAGTC	3 cut(s)	550, 814, 1117
Ppu21I	YACGTR	1 cut(s)	1129
PsiI	TTATAA	1 cut(s)	794
Psp124BI	GAGCTC	2 cut(s)	297, 834
Psp1406I	AACGTT	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	194
PspCI	CACGTG	1 cut(s)	1129
PspEI	GGTNACC	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	1143
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	3 cut(s)	9, 27, 383
PspPI	GGNCC	2 cut(s)	7, 115
PspXI	VCTCGAGB	1 cut(s)	827
PsrI	GAACNNNNNNTAC	2 cut(s)	564, 596
PsuI	RGATCY	2 cut(s)	25, 771
PvuII	CAGCTG	1 cut(s)	1147
RsaI	GTAC	2 cut(s)	604, 1193
RsaNI	GTAC	2 cut(s)	603, 1192
RseI	CAYNNNNRTG	4 cut(s)	302, 484, 521, 666
SacI	GAGCTC	2 cut(s)	297, 834
SaqAI	TTAA	3 cut(s)	282, 447, 992
SatI	GCNGC	3 cut(s)	327, 930, 1059
Sau3AI	GATC	3 cut(s)	25, 394, 771
Sau96I	GGNCC	2 cut(s)	7, 115
SchI	GAGTC	3 cut(s)	551, 814, 1118
ScrFI	CCNGG	2 cut(s)	196, 230
SduI	GDGCHC	4 cut(s)	297, 481, 834, 955
SfaNI	GCATC	2 cut(s)	317, 354
SfcI	CTRYAG	1 cut(s)	400
Sfr274I	CTCGAG	1 cut(s)	827
SfuI	TTCGAA	1 cut(s)	424
SinI	GGWCC	2 cut(s)	7, 115
SlaI	CTCGAG	1 cut(s)	827
SmiMI	CAYNNNNRTG	4 cut(s)	302, 484, 521, 666
SmlI	CTYRAG	1 cut(s)	827
SmoI	CTYRAG	1 cut(s)	827
SphI	GCATGC	1 cut(s)	989
Sse9I	AATT	5 cut(s)	110, 891, 939, 1012, 1138
SsiI	CCGC	8 cut(s)	5, 29, 317, 326, 329, 520, 736, 1059
SspMI	CTAG	2 cut(s)	134, 242
SstI	GAGCTC	2 cut(s)	297, 834
StyD4I	CCNGG	2 cut(s)	194, 228
StyI	CCWWGG	1 cut(s)	955
TaaI	ACNGT	8 cut(s)	74, 257, 356, 845, 859, 869, 970, 1040
TaiI	ACGT	3 cut(s)	143, 463, 1131
TaqI	TCGA	4 cut(s)	54, 291, 424, 828
TasI	AATT	5 cut(s)	110, 891, 939, 1012, 1138
TatI	WGTACW	2 cut(s)	602, 1191
TauI	GCSGC	2 cut(s)	329, 1061
TfiI	GAWTC	3 cut(s)	56, 452, 695
Tru1I	TTAA	3 cut(s)	282, 447, 992
Tru9I	TTAA	3 cut(s)	282, 447, 992
TscAI	CASTG	6 cut(s)	359, 486, 850, 862, 874, 1083
TseFI	GTSAC	4 cut(s)	74, 536, 799, 817
TseI	GCWGC	1 cut(s)	929
Tsp45I	GTSAC	4 cut(s)	74, 536, 799, 817
TspDTI	ATGAA	3 cut(s)	1005, 1061, 1155
TspGWI	ACGGA	1 cut(s)	524
TspRI	CASTG	6 cut(s)	359, 486, 850, 862, 874, 1083
Van91I	CCANNNNNTGG	1 cut(s)	981
VpaK11BI	GGWCC	2 cut(s)	7, 115
XagI	CCTNNNNNAGG	1 cut(s)	15
XapI	RAATTY	2 cut(s)	939, 1138
XceI	RCATGY	2 cut(s)	989, 1002
XhoI	CTCGAG	1 cut(s)	827
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	2 cut(s)	134, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.