Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008609

Physical Location & Seq

Genomic Coordinates Forward (+)

7563658 .. 7568877

Gene Structure 5220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3822 bp

ATGGTCGCTGGTGGATTTGGGTGGAACAATTTCGAGGATACCCTAGAGGGTGGTGTGATGGGGAGAGATGATGAAAGTGCGAAAGTGGTGGAGGATGTAGAAGAAGGTGAAATTTCCGATTCGAATTCAGTGGAGGAGATCAGTGAGGAAGATTTTATCAAGCAGGAGAAGCAGCACGAAGTTAAGGTGGTGGTTCCGCGGCCGCCGCCCAATGATCAATCTAAATCCAACGGCGGAGATGATGCTAGGGTTTGGACGATGCGCGACATCTACAACCACCCGGGATGTCGGGGGTACAGGCCCGGCTTGGTTAGCCTCGCTTGGGCTCAGGCCGTACAGAATAAGCCGCTCAATCAGTTTCTGCAGATGAATGTTGATCCCAACGAGAACTTGAAGCGATTGTCATCGTCGCCGTCGGTGAATTCGCCTGAAAGGAGCAATGCGAAGGAAGTGGATAGAGTGGTGATTGTTGACAGTGGCGATGAAATGGATGCTGAGAAAGAGGAAGGGGAGTTGGAGGAGGGTGAGATTGATTTGGATTCGGAGGCTTCTGGTGACGAAAAGGCCGCCGCGGGTGTGGCTGACGAAGCTGGAGATGGTGTTTTGGATTGTGATAATATGAACATTGATAATCCAGAGACAGGCTTGAAGAATGAGAAGCTGGAGAAGCGAGTGAGCTCGATTCGGAAAGCTTTGGCAAGTGTTACTAGAAATGAAGCAGAGAAATCATTTGTGGATGTTTGTCTCCAGTTACTCAACACTTTGGTGAGCTTGCGTGGGGTGCTTTCGGAAACTAATGTTTCCACAAAGGAAGCTCTTGTTCATCTGTCCTTCACTGCGGTACAAGCTATCACCTCCGTGTTCTGCTCCATGAGACCAGTCCAAAAGGAACAGAACGAAGATATCATATCAAGGTTACTTTCTTCTGTGAAGAATGATCCTCCTCTTTTTACCCCTGAGCAGATAAAAGAGATAGGTGTCTTGACATCCTTTGTGGATTCCCCTGATGTTTTTCTTCAAACTAAAGCAGGCATTAAAGATGATGAGATACAGGTTATCGGGTTTAATAATAAGAATTCTGACGCTTCGGCTGTAAATGCGACTTCTTCAGCTAACTACAGCAATCCAATTATGTTGTCCGAAGTTCCAAGATCAGGAGTGTCTGGTTTAAAGGGTAGACGGGTCGTGCTTCCCCTGTTAGACACTCACAAGGATCATGATGCAGATAGCCTTCCTTCCCCAACACGAGAATCCCCATCATGTTTTCCTGTTCAGAACACATTGGTTTTTACTGATAGGATGGTAAAACCAGAGCCTGATACCTCTAGGGCGCCAAGTGCAGAAGGTTCTGGATTGCATCCTTATGATACTGATGCCCTTAAAGCTGTATCTACTTATCAACATATTAACCGGAGCTCTTTTTTCATGAGTGAAAGACTTCCAAGTCCAACCCCTTCAGAAGACGGTGATAAAGGGGACGATGATACTGTTGGAGAGGTTTCTAGTTCTTCTTCTGCTAGTAATTTGAGAACTTCAGTTCCTCCTATTTTGGGACAGCAAGTTGTTTCTCCCTTCCCTATCCCTGTGGGTAGCTCCATCATGCAAGAACGATTTACAGGTAAAAGTGCTGCCCCTGCGAGTTCTGGGTCTAATATCACCATAAAAGTTCCAACTAGGAATAGAGATCCTAGGCTTCGGTTTTCCAATTCTGATGTGGGTGTCTTGAATCATAACCCACAACCCTTGACAGTGCATAGTGCACCTAAAATAGATTCGGTTATAACATTAAGCTCGAGAAAGCAAAAACCCATTGAGGATTCTAAATTTGATGGTCCTGCATTAAAGAGGCAAAGGAATACATTGGGAAACTCGGGCTTTGTTAAAGATCCAAAAACCGCTTCTGGAAGTTGTGGCTGGTTGGAGGACATTGGTGGCTTTGGACCTCATTTAAGTAGCAATAATCAGACAGTGGAGAACAAACCGTCTGATCCCAGAAAAGTGGTTAATGTTGTAAGTAGTCCTAGTACTGTTGATGGAAACTCAAATGGCCCAAACAGTTCAAACGAGCATGTGGCATTGACGGATTTAAGCACAGCTTCCTTGCCTGCATTATTAAAGGCTGTGAATCCAACCATGCTGTTAAACATACTTAAGCTGGGACAGCAGCAAAGGTTAGCTGCAGAAGCCCAGCCGAAGTCTGCTTATCCTGAAAAAAGTATGACACATCCTATAAGCTCAAATTCAATACCAGGGTCAGATGCATCAGTGAATGTTCCTTCAAAGACTGCAGCGATGTTGCAGACACTTCCCATTAGTTCACAAAAAGCTCCGATGGATGAGTCAGGGAAAGTTCGTATGAAACCCCGCGACCCTCGCCGTATTCTCCATGGTAATGTACTTCAAAAGAGTGGGAGCTTGGGACAAGAGCAGTTCAGAAATATTGTAAACCCACTGCCGAGCAGCCAGGGGAATAAGGATAATCTTACCGGTGAAAAGCAAGATGGTCAGTCAGATATGAAGCTAGTCACTTCTCAATCAGTAGAGGCCCCTGACATTGCTCGTCAATTCACAAAGAATCTGAAAAATATTGCTGATATGATGTCTGTTTCTAATGGATTAACAAGTCCAGCAATAGCTTCTCAGAGTGTTCCTTCCCAACCTGTTCCAATCAAATCTGAGAGAATAGATCCAAAAGCTGAGGAGCAGCGTACTGGAAGTAGTTCTGCTTTTGAAGCAGTTGCTGCTGGTCCCTCTCGTTCAGCTCCCATGTGGGGAGATGTTGAACATCTGTTTGAAGGATACGATGACCAGCAAAAAGTTGCTATCCAGAGAGAGAGAGCAAGGAGGATAGAAGAACAGAAGAAAATGTTTGCAGCACGCAAGCTCTGCCTCGTCTTGGATCTAGATCACACACTTCTTAATTCAGCTAAGTTTATTGAGGTAGATCCAGTGCATGATGAGATTTTGAGAAAGAAAGAGGAACAGGATCGTGAAAAACCACAGCGACATCTCTTCCGATTTCATCACATGGGAATGTGGACCAAATTGCGGCCTGGGGTTTGGAATTTTTTGGAGAGGGCTAGTCAACTTTTTGAGTTGCATCTTTACACAATGGGGAACAAGCTATATGCTACGGAAATGGCAAAAGTGCTAGATCCAACAGGGGTACTTTTTGCTGGACGAGTCATTTCTAGAGGCGACGATGGAGATTCTGATGATGGTGATGCTCCCAAGAGTAAGGATCTGGAAGGAGTTTTGGGTATGGAATCAGATGTTGTGATTATAGATGATTCTGTGAGGGTCTGGCCGCATAACAAACTGAACTTGATAGTTGTGGAACGTTATACGTACTTTCCTTGTAGCAGACGACAATTTGGGCTTCTAGGTCCTTCTCTACTCGAGATTGATCATGACGAGAGACAAGAAGATGGGACTTTGGCATCCTCATTGTCGGTTATTGAGAAGATACATCAGATCTTTTTCTCCCATCCCTCCCTAGATGAAGCAGATGTTAGAAATATTCTAGCCTCTGAACAGCGGAAGATTTTGAATGGTTGTCGTATAGTATTTAGCAGGGTGTTTCCAGTTGGTGAGGTCAATCCTCACCTACATCCGCTGTGGCAGACAGCTGAACAGTTTGGTGCTGTGTGTACCAACCATATAGATGACCAGGTCACCCATGTAGTTGCCAATTCCCTTGGAACTGACAAGGTGAATTGGGCTATTTCTTTGGGAAAATTTGTTGTCCATCCTGGCTGGGTGGAAGCATCAGCTTTGCTTTATCGGAGGGCAAATGAGCAGGATTTTGCCATTAAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0023051 GO:0023057 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1902494 GO:1903506 GO:1905957 GO:1905958 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

1274

Amino Acids

139.39

Weight (kDa)

5.34

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_CPL3	PF25505	225 - 343	3.8e-42	CPL3 ARM repeat domain
NIF	PF03031	962 - 1116	1.1e-22	NLI interacting factor-like phosphatase
BRCT	PF00533	1180 - 1257	1.3e-07	BRCA1 C Terminus (BRCT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33540 AT2G33540
fragaria_vesca	FvH4_4g22870 FvH4_4g22870 FvH4_4g22870
malus_domestica	MD13G1129000.v1.1 MD16G1128700.v1.1 MD16G1128800.v1.1
prunus_persica	Prupe.1G217600_v2.0.a1
pyrus_communis	pycom13g11190 pycom13g11200 pycom16g10920
rosa_chinensis	RchiOBHm_Chr4g0429111 RchiOBHm_Chr4g0429121
rosa_laevigata	RLG00000007096
rosa_multiflora	Rmu_sc0000846.1_g000014
rosa_roxburghii	Rroxscaffold_5G00370740
rosa_rugosa	Rorug04G0233100
rosa_samantha	Rh4AG289100 Rh4BG295100 Rh4CG310500 Rh4DG292000
rosa_wichuraiana	Rw4G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1781
AasI	GACNNNNNNGTC	1 cut(s)	1443
AccB1I	GGYRCC	1 cut(s)	1330
AccBSI	CCGCTC	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	1177
AccII	CGCG	4 cut(s)	199, 264, 572, 2367
AclI	AACGTT	1 cut(s)	3340
AcoI	YGGCCR	2 cut(s)	200, 3305
AcsI	RAATTY	8 cut(s)	111, 124, 421, 1075, 1823, 2239, 3064, 3737
AcuI	CTGAAG	3 cut(s)	1092, 1440, 1518
AcyI	GRCGYC	1 cut(s)	1331
AfaI	GTAC	9 cut(s)	296, 336, 843, 2026, 2397, 2710, 3168, 3350, 3652
AfiI	CCNNNNNNNGG	7 cut(s)	322, 641, 1154, 1550, 2771, 2896, 3048
AflII	CTTAAG	1 cut(s)	2150
AgeI	ACCGGT	1 cut(s)	2486
AjnI	CCWGG	5 cut(s)	2248, 2463, 3052, 3669, 3751
AjuI	GAANNNNNNNTTGG	2 cut(s)	1882, 1914
AleI	CACNNNNGTG	2 cut(s)	764, 857
AloI	GAACNNNNNNTCC	2 cut(s)	1522, 1554
Alw21I	GWGCWC	3 cut(s)	680, 1418, 1762
Alw26I	GTCTC	4 cut(s)	632, 749, 868, 3412
Alw44I	GTGCAC	1 cut(s)	1758
AlwNI	CAGNNNCTG	3 cut(s)	361, 1316, 2741
Ama87I	CYCGRG	4 cut(s)	280, 1792, 1870, 3398
AoxI	GGCC	8 cut(s)	200, 299, 330, 564, 2047, 2544, 3050, 3305
ApaLI	GTGCAC	1 cut(s)	1758
ApeKI	GCWGC	9 cut(s)	172, 1628, 2164, 2177, 2288, 2460, 2704, 2741, 2873
ApoI	RAATTY	8 cut(s)	111, 124, 421, 1075, 1823, 2239, 3064, 3737
AsiGI	ACCGGT	1 cut(s)	2486
Asp700I	GAANNNNTTC	3 cut(s)	29, 1437, 2719
AspA2I	CCTAGG	1 cut(s)	1688
AspLEI	GCGC	2 cut(s)	264, 1333
AspS9I	GGNCC	8 cut(s)	300, 1832, 1940, 2048, 2545, 2747, 3039, 3386
AsuC2I	CCSGG	3 cut(s)	281, 282, 303
AsuII	TTCGAA	1 cut(s)	122
AvaI	CYCGRG	4 cut(s)	280, 1792, 1870, 3398
AvaII	GGWCC	5 cut(s)	1832, 1940, 2747, 3039, 3386
AvrII	CCTAGG	1 cut(s)	1688
BaeGI	GKGCMC	1 cut(s)	1762
BanI	GGYRCC	1 cut(s)	1330
BanII	GRGCYC	3 cut(s)	328, 680, 1418
BauI	CACGAG	1 cut(s)	1245
BbsI	GAAGAC	1 cut(s)	1467
Bbv12I	GWGCWC	3 cut(s)	680, 1418, 1762
BbvCI	CCTCAGC	1 cut(s)	2697
BbvI	GCAGC	9 cut(s)	184, 1615, 2164, 2176, 2300, 2472, 2716, 2728, 2885
BceAI	ACGGC	4 cut(s)	247, 317, 397, 2361
BciT130I	CCWGG	5 cut(s)	2250, 2465, 3054, 3671, 3753
BciVI	GTATCC	2 cut(s)	31, 2792
BclI	TGATCA	2 cut(s)	214, 3406
BcnI	CCSGG	3 cut(s)	281, 282, 303
BcoDI	GTCTC	4 cut(s)	632, 749, 868, 3412
BfmI	CTRYAG	4 cut(s)	362, 1117, 2178, 2286
BfoI	RGCGCY	1 cut(s)	1334
BfrI	CTTAAG	1 cut(s)	2150
BfuI	GTATCC	2 cut(s)	31, 2792
BglII	AGATCT	1 cut(s)	3474
BlnI	CCTAGG	1 cut(s)	1688
BmcAI	AGTACT	1 cut(s)	2026
Bme1390I	CCNGG	8 cut(s)	281, 282, 303, 2250, 2465, 3054, 3671, 3753
Bme18I	GGWCC	5 cut(s)	1832, 1940, 2747, 3039, 3386
BmeT110I	CYCGRG	4 cut(s)	280, 1792, 1870, 3398
BmgT120I	GGNCC	8 cut(s)	300, 1832, 1940, 2048, 2545, 2747, 3039, 3386
BmiI	GGNNCC	4 cut(s)	195, 1332, 2547, 2749
BmrFI	CCNGG	8 cut(s)	281, 282, 303, 2250, 2465, 3054, 3671, 3753
BpiI	GAAGAC	1 cut(s)	1467
BpmI	CTGGAG	3 cut(s)	612, 683, 731
Bpu10I	CCTNAGC	3 cut(s)	327, 957, 2697
Bpu14I	TTCGAA	1 cut(s)	122
BpuMI	CCSGG	3 cut(s)	281, 282, 303
BsaAI	YACGTR	1 cut(s)	3348
BsaBI	GATNNNNATC	2 cut(s)	403, 2904
BsaHI	GRCGYC	1 cut(s)	1331
BsaI	GGTCTC	1 cut(s)	868
BsaJI	CCNNGG	9 cut(s)	197, 280, 570, 1688, 2249, 2386, 2464, 3053, 3697
BsaWI	WCCGGW	2 cut(s)	1410, 2486
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bsc4I	CCNNNNNNNGG	7 cut(s)	322, 641, 1154, 1550, 2771, 2896, 3048
Bse118I	RCCGGY	1 cut(s)	2486
Bse1I	ACTGG	5 cut(s)	748, 878, 2716, 2948, 3584
Bse3DI	GCAATG	2 cut(s)	445, 2553
Bse8I	GATNNNNATC	2 cut(s)	403, 2904
BseBI	CCWGG	5 cut(s)	2250, 2465, 3054, 3671, 3753
BseDI	CCNNGG	9 cut(s)	197, 280, 570, 1688, 2249, 2386, 2464, 3053, 3697
BseJI	GATNNNNATC	2 cut(s)	403, 2904
BseLI	CCNNNNNNNGG	7 cut(s)	322, 641, 1154, 1550, 2771, 2896, 3048
BseMI	GCAATG	2 cut(s)	445, 2553
BseMII	CTCAG	6 cut(s)	341, 486, 948, 2654, 2667, 2688
BseNI	ACTGG	5 cut(s)	748, 878, 2716, 2948, 3584
BseRI	GAGGAG	4 cut(s)	149, 533, 933, 2714
BseSI	GKGCMC	1 cut(s)	1762
BseX3I	CGGCCG	1 cut(s)	200
BseXI	GCAGC	9 cut(s)	184, 1615, 2164, 2176, 2300, 2472, 2716, 2728, 2885
BseYI	CCCAGC	3 cut(s)	2155, 2187, 3756
BsgI	GTGCAG	1 cut(s)	1359
Bsh1236I	CGCG	4 cut(s)	199, 264, 572, 2367
Bsh1285I	CGRYCG	1 cut(s)	203
BshFI	GGCC	8 cut(s)	202, 301, 332, 566, 2049, 2546, 3052, 3307
BshNI	GGYRCC	1 cut(s)	1330
BshTI	ACCGGT	1 cut(s)	2486
BsiEI	CGRYCG	1 cut(s)	203
BsiHKAI	GWGCWC	3 cut(s)	680, 1418, 1762
BsiHKCI	CYCGRG	4 cut(s)	280, 1792, 1870, 3398
BsiSI	CCGG	4 cut(s)	281, 303, 1411, 2487
BslFI	GGGAC	6 cut(s)	1490, 1566, 2172, 2433, 2733, 3445
BslI	CCNNNNNNNGG	7 cut(s)	322, 641, 1154, 1550, 2771, 2896, 3048
BsmAI	GTCTC	4 cut(s)	632, 749, 868, 3412
BsmFI	GGGAC	6 cut(s)	1490, 1566, 2172, 2433, 2733, 3445
BsnI	GGCC	8 cut(s)	202, 301, 332, 566, 2049, 2546, 3052, 3307
Bso31I	GGTCTC	1 cut(s)	868
BsoBI	CYCGRG	4 cut(s)	280, 1792, 1870, 3398
Bsp119I	TTCGAA	1 cut(s)	122
Bsp1286I	GDGCHC	4 cut(s)	328, 680, 1418, 1762
Bsp19I	CCATGG	1 cut(s)	2386
BspANI	GGCC	8 cut(s)	202, 301, 332, 566, 2049, 2546, 3052, 3307
BspCNI	CTCAG	6 cut(s)	340, 487, 949, 2653, 2668, 2689
BspFNI	CGCG	4 cut(s)	199, 264, 572, 2367
BspHI	TCATGA	3 cut(s)	1216, 1425, 3409
BspLI	GGNNCC	4 cut(s)	195, 1332, 2547, 2749
BspMAI	CTGCAG	3 cut(s)	366, 2182, 2290
BspT104I	TTCGAA	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	1330
BspTI	CTTAAG	1 cut(s)	2150
BspTNI	GGTCTC	1 cut(s)	868
BsrBI	CCGCTC	1 cut(s)	349
BsrDI	GCAATG	2 cut(s)	445, 2553
BsrFI	RCCGGY	1 cut(s)	2486
BsrI	ACTGG	5 cut(s)	748, 878, 2716, 2948, 3584
BssAI	RCCGGY	1 cut(s)	2486
BssECI	CCNNGG	9 cut(s)	197, 280, 570, 1688, 2249, 2386, 2464, 3053, 3697
BssNI	GRCGYC	1 cut(s)	1331
BssSI	CACGAG	1 cut(s)	1245
BssT1I	CCWWGG	3 cut(s)	1688, 2386, 3697
Bst2BI	CACGAG	1 cut(s)	1245
Bst2UI	CCWGG	5 cut(s)	2250, 2465, 3054, 3671, 3753
Bst4CI	ACNGT	9 cut(s)	476, 1466, 1489, 1750, 1969, 1983, 2029, 2057, 3636
Bst6I	CTCTTC	1 cut(s)	3017
BstACI	GRCGYC	1 cut(s)	1331
BstAFI	CTTAAG	1 cut(s)	2150
BstAPI	GCANNNNNTGC	2 cut(s)	2741, 2886
BstBAI	YACGTR	1 cut(s)	3348
BstBI	TTCGAA	1 cut(s)	122
BstC8I	GCNNGC	5 cut(s)	773, 1030, 2106, 2878, 2882
BstDEI	CTNAG	7 cut(s)	327, 495, 957, 2640, 2676, 2697, 2928
BstDSI	CCRYGG	3 cut(s)	197, 570, 2386
BstEII	GGTNACC	1 cut(s)	3673
BstFNI	CGCG	4 cut(s)	199, 264, 572, 2367
BstH2I	RGCGCY	1 cut(s)	1334
BstHHI	GCGC	2 cut(s)	264, 1333
BstMAI	GTCTC	4 cut(s)	632, 749, 868, 3412
BstMCI	CGRYCG	1 cut(s)	203
BstNI	CCWGG	5 cut(s)	2250, 2465, 3054, 3671, 3753
BstNSI	RCATGY	1 cut(s)	2072
BstPI	GGTNACC	1 cut(s)	3673
BstSCI	CCNGG	8 cut(s)	279, 280, 301, 2248, 2463, 3052, 3669, 3751
BstSFI	CTRYAG	4 cut(s)	362, 1117, 2178, 2286
BstSLI	GKGCMC	1 cut(s)	1762
BstSNI	TACGTA	1 cut(s)	3348
BstUI	CGCG	4 cut(s)	199, 264, 572, 2367
BstV1I	GCAGC	9 cut(s)	184, 1615, 2164, 2176, 2300, 2472, 2716, 2728, 2885
BstV2I	GAAGAC	1 cut(s)	1467
BstX2I	RGATCY	8 cut(s)	1684, 1885, 2686, 2899, 2944, 3154, 3241, 3474
BstXI	CCANNNNNNTGG	1 cut(s)	1999
BstYI	RGATCY	8 cut(s)	1684, 1885, 2686, 2899, 2944, 3154, 3241, 3474
BstZI	CGGCCG	1 cut(s)	200
BsuI	GTATCC	2 cut(s)	31, 2792
BsuRI	GGCC	8 cut(s)	202, 301, 332, 566, 2049, 2546, 3052, 3307
BtgI	CCRYGG	3 cut(s)	197, 570, 2386
BtgZI	GCGATG	2 cut(s)	495, 2306
BtsI	GCAGTG	2 cut(s)	834, 2450
BtsIMutI	CAGTG	9 cut(s)	135, 148, 481, 834, 1755, 1974, 2271, 2450, 2955
Cac8I	GCNNGC	5 cut(s)	773, 1030, 2106, 2878, 2882
CaiI	CAGNNNCTG	3 cut(s)	361, 1316, 2741
CciI	TCATGA	3 cut(s)	1216, 1425, 3409
CciNI	GCGGCCGC	1 cut(s)	200
CfoI	GCGC	2 cut(s)	264, 1333
Cfr10I	RCCGGY	1 cut(s)	2486
Cfr13I	GGNCC	8 cut(s)	300, 1832, 1940, 2048, 2545, 2747, 3039, 3386
Cfr42I	CCGCGG	2 cut(s)	200, 573
Cfr9I	CCCGGG	1 cut(s)	280
CseI	GACGC	1 cut(s)	1091
CsiI	ACCWGGT	1 cut(s)	3669
Csp6I	GTAC	9 cut(s)	295, 335, 842, 2025, 2396, 2709, 3167, 3349, 3651
CspAI	ACCGGT	1 cut(s)	2486
CspCI	CAANNNNNGTGG	2 cut(s)	1725, 1760
CviQI	GTAC	9 cut(s)	295, 335, 842, 2025, 2396, 2709, 3167, 3349, 3651
DdeI	CTNAG	7 cut(s)	327, 495, 957, 2640, 2676, 2697, 2928
DinI	GGCGCC	1 cut(s)	1332
DraI	TTTAAA	1 cut(s)	1170
DrdI	GACNNNNNNGTC	1 cut(s)	1443
DseDI	GACNNNNNNGTC	1 cut(s)	1443
EaeI	YGGCCR	2 cut(s)	200, 3305
EagI	CGGCCG	1 cut(s)	200
Eam1104I	CTCTTC	1 cut(s)	3017
EarI	CTCTTC	1 cut(s)	3017
EciI	GGCGGA	1 cut(s)	249
Ecl136II	GAGCTC	2 cut(s)	678, 1416
EclXI	CGGCCG	1 cut(s)	200
Eco105I	TACGTA	1 cut(s)	3348
Eco130I	CCWWGG	3 cut(s)	1688, 2386, 3697
Eco24I	GRGCYC	3 cut(s)	328, 680, 1418
Eco31I	GGTCTC	1 cut(s)	868
Eco32I	GATATC	1 cut(s)	904
Eco47I	GGWCC	5 cut(s)	1832, 1940, 2747, 3039, 3386
Eco52I	CGGCCG	1 cut(s)	200
Eco53kI	GAGCTC	2 cut(s)	678, 1416
Eco57I	CTGAAG	3 cut(s)	1092, 1440, 1518
Eco88I	CYCGRG	4 cut(s)	280, 1792, 1870, 3398
Eco91I	GGTNACC	1 cut(s)	3673
EcoICRI	GAGCTC	2 cut(s)	678, 1416
EcoO109I	RGGNCCY	2 cut(s)	2545, 3386
EcoO65I	GGTNACC	1 cut(s)	3673
EcoRI	GAATTC	3 cut(s)	124, 421, 1075
EcoRII	CCWGG	5 cut(s)	2248, 2463, 3052, 3669, 3751
EcoRV	GATATC	1 cut(s)	904
EcoT14I	CCWWGG	3 cut(s)	1688, 2386, 3697
EcoT22I	ATGCAT	1 cut(s)	2263
EcoT38I	GRGCYC	3 cut(s)	328, 680, 1418
EgeI	GGCGCC	1 cut(s)	1332
EheI	GGCGCC	1 cut(s)	1332
ErhI	CCWWGG	3 cut(s)	1688, 2386, 3697
FalI	AAGNNNNNCTT	2 cut(s)	2080, 2112
FaqI	GGGAC	6 cut(s)	1490, 1566, 2172, 2433, 2733, 3445
FauI	CCCGC	2 cut(s)	565, 2372
FbaI	TGATCA	2 cut(s)	214, 3406
FblI	GTMKAC	1 cut(s)	1177
FriOI	GRGCYC	3 cut(s)	328, 680, 1418
GlaI	GCGC	2 cut(s)	263, 1332
GsaI	CCCAGC	3 cut(s)	2159, 2191, 3760
GsuI	CTGGAG	3 cut(s)	612, 683, 731
HaeII	RGCGCY	1 cut(s)	1334
HaeIII	GGCC	8 cut(s)	202, 301, 332, 566, 2049, 2546, 3052, 3307
HapII	CCGG	4 cut(s)	281, 303, 1411, 2487
HgaI	GACGC	1 cut(s)	1091
HhaI	GCGC	2 cut(s)	264, 1333
Hin1I	GRCGYC	1 cut(s)	1331
Hin6I	GCGC	2 cut(s)	262, 1331
HinP1I	GCGC	2 cut(s)	262, 1331
HincII	GTYRAC	2 cut(s)	472, 3086
HindII	GTYRAC	2 cut(s)	472, 3086
HindIII	AAGCTT	1 cut(s)	690
HpaII	CCGG	4 cut(s)	281, 303, 1411, 2487
Hpy166II	GTNNAC	8 cut(s)	472, 1178, 1760, 2318, 2446, 3039, 3086, 3651
Hpy8I	GTNNAC	8 cut(s)	472, 1178, 1760, 2318, 2446, 3039, 3086, 3651
Hpy99I	CGWCG	3 cut(s)	412, 418, 3203
HpyCH4III	ACNGT	9 cut(s)	476, 1466, 1489, 1750, 1969, 1983, 2029, 2057, 3636
HpyCH4IV	ACGT	2 cut(s)	3340, 3347
HpyF3I	CTNAG	7 cut(s)	327, 495, 957, 2640, 2676, 2697, 2928
HpySE526I	ACGT	2 cut(s)	3340, 3347
Hsp92I	GRCGYC	1 cut(s)	1331
HspAI	GCGC	2 cut(s)	262, 1331
KasI	GGCGCC	1 cut(s)	1330
Ksp22I	TGATCA	2 cut(s)	214, 3406
KspI	CCGCGG	2 cut(s)	200, 573
LmnI	GCTCC	9 cut(s)	435, 872, 1413, 1598, 2332, 2412, 2701, 2767, 3232
Lsp1109I	GCAGC	9 cut(s)	184, 1615, 2164, 2176, 2300, 2472, 2716, 2728, 2885
MabI	ACCWGGT	1 cut(s)	3669
MaeII	ACGT	2 cut(s)	3340, 3347
MaeIII	GTNAC	6 cut(s)	554, 703, 750, 915, 2524, 3673
MbiI	CCGCTC	1 cut(s)	349
MflI	RGATCY	8 cut(s)	1684, 1885, 2686, 2899, 2944, 3154, 3241, 3474
MhlI	GDGCHC	4 cut(s)	328, 680, 1418, 1762
Mly113I	GGCGCC	1 cut(s)	1331
MlyI	GAGTC	2 cut(s)	2348, 3192
MmeI	TCCRAC	8 cut(s)	252, 495, 1471, 1472, 1694, 1899, 2153, 3182
Mph1103I	ATGCAT	1 cut(s)	2263
MroXI	GAANNNNTTC	3 cut(s)	29, 1437, 2719
MslI	CAYNNNNRTG	6 cut(s)	764, 857, 1362, 2391, 3032, 3663
MspA1I	CMGCKG	5 cut(s)	199, 572, 3538, 3616, 3629
MspCI	CTTAAG	1 cut(s)	2150
MspI	CCGG	4 cut(s)	281, 303, 1411, 2487
MspR9I	CCNGG	8 cut(s)	281, 282, 303, 2250, 2465, 3054, 3671, 3753
MvaI	CCWGG	5 cut(s)	2250, 2465, 3054, 3671, 3753
MvnI	CGCG	4 cut(s)	199, 264, 572, 2367
NarI	GGCGCC	1 cut(s)	1331
NciI	CCSGG	3 cut(s)	281, 282, 303
NcoI	CCATGG	1 cut(s)	2386
NlaIV	GGNNCC	4 cut(s)	195, 1332, 2547, 2749
NmeAIII	GCCGAG	1 cut(s)	2481
NmuCI	GTSAC	3 cut(s)	554, 2524, 3673
NotI	GCGGCCGC	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	2263
NspI	RCATGY	1 cut(s)	2072
NspV	TTCGAA	1 cut(s)	122
OliI	CACNNNNGTG	2 cut(s)	764, 857
PaeR7I	CTCGAG	2 cut(s)	1792, 3398
PagI	TCATGA	3 cut(s)	1216, 1425, 3409
PdmI	GAANNNNTTC	3 cut(s)	29, 1437, 2719
PflFI	GACNNNGTC	1 cut(s)	3671
PinAI	ACCGGT	1 cut(s)	2486
PleI	GAGTC	2 cut(s)	2347, 3191
PluTI	GGCGCC	1 cut(s)	1334
PpsI	GAGTC	2 cut(s)	2347, 3191
Ppu21I	YACGTR	1 cut(s)	3348
PpuMI	RGGWCCY	1 cut(s)	3386
PsiI	TTATAA	1 cut(s)	1781
Psp124BI	GAGCTC	2 cut(s)	680, 1418
Psp1406I	AACGTT	1 cut(s)	3340
Psp5II	RGGWCCY	1 cut(s)	3386
Psp6I	CCWGG	5 cut(s)	2248, 2463, 3052, 3669, 3751
PspEI	GGTNACC	1 cut(s)	3673
PspFI	CCCAGC	3 cut(s)	2155, 2187, 3756
PspGI	CCWGG	5 cut(s)	2248, 2463, 3052, 3669, 3751
PspN4I	GGNNCC	4 cut(s)	195, 1332, 2547, 2749
PspPI	GGNCC	8 cut(s)	300, 1832, 1940, 2048, 2545, 2747, 3039, 3386
PspPPI	RGGWCCY	1 cut(s)	3386
PstI	CTGCAG	3 cut(s)	366, 2182, 2290
PstNI	CAGNNNCTG	3 cut(s)	361, 1316, 2741
PsuI	RGATCY	8 cut(s)	1684, 1885, 2686, 2899, 2944, 3154, 3241, 3474
PsyI	GACNNNGTC	1 cut(s)	3671
PvuII	CAGCTG	1 cut(s)	3629
RsaI	GTAC	9 cut(s)	296, 336, 843, 2026, 2397, 2710, 3168, 3350, 3652
RsaNI	GTAC	9 cut(s)	295, 335, 842, 2025, 2396, 2709, 3167, 3349, 3651
RseI	CAYNNNNRTG	6 cut(s)	764, 857, 1362, 2391, 3032, 3663
SacI	GAGCTC	2 cut(s)	680, 1418
SacII	CCGCGG	2 cut(s)	200, 573
Sau96I	GGNCC	8 cut(s)	300, 1832, 1940, 2048, 2545, 2747, 3039, 3386
ScaI	AGTACT	1 cut(s)	2026
SchI	GAGTC	2 cut(s)	2348, 3192
ScrFI	CCNGG	8 cut(s)	281, 282, 303, 2250, 2465, 3054, 3671, 3753
SduI	GDGCHC	4 cut(s)	328, 680, 1418, 1762
SexAI	ACCWGGT	1 cut(s)	3669
SfcI	CTRYAG	4 cut(s)	362, 1117, 2178, 2286
SfoI	GGCGCC	1 cut(s)	1332
Sfr274I	CTCGAG	2 cut(s)	1792, 3398
Sfr303I	CCGCGG	2 cut(s)	200, 573
SfuI	TTCGAA	1 cut(s)	122
SgrBI	CCGCGG	2 cut(s)	200, 573
SinI	GGWCC	5 cut(s)	1832, 1940, 2747, 3039, 3386
SlaI	CTCGAG	2 cut(s)	1792, 3398
SmaI	CCCGGG	1 cut(s)	282
SmiMI	CAYNNNNRTG	6 cut(s)	764, 857, 1362, 2391, 3032, 3663
SmlI	CTYRAG	3 cut(s)	1792, 2150, 3398
SmoI	CTYRAG	3 cut(s)	1792, 2150, 3398
SnaBI	TACGTA	1 cut(s)	3348
SspDI	GGCGCC	1 cut(s)	1330
SspI	AATATT	3 cut(s)	2440, 2587, 3520
SstI	GAGCTC	2 cut(s)	680, 1418
StyD4I	CCNGG	8 cut(s)	279, 280, 301, 2248, 2463, 3052, 3669, 3751
StyI	CCWWGG	3 cut(s)	1688, 2386, 3697
TaaI	ACNGT	9 cut(s)	476, 1466, 1489, 1750, 1969, 1983, 2029, 2057, 3636
TaiI	ACGT	2 cut(s)	3343, 3350
TaqI	TCGA	5 cut(s)	33, 122, 680, 1793, 3399
TatI	WGTACW	2 cut(s)	2024, 2395
TauI	GCSGC	8 cut(s)	202, 205, 208, 349, 569, 572, 3052, 3310
TscAI	CASTG	9 cut(s)	135, 148, 481, 841, 1755, 1974, 2271, 2457, 2955
TseFI	GTSAC	3 cut(s)	554, 2524, 3673
TseI	GCWGC	9 cut(s)	172, 1628, 2164, 2177, 2288, 2460, 2704, 2741, 2873
Tsp45I	GTSAC	3 cut(s)	554, 2524, 3673
TspGWI	ACGGA	3 cut(s)	847, 2096, 3149
TspMI	CCCGGG	1 cut(s)	280
TspRI	CASTG	9 cut(s)	135, 148, 481, 841, 1755, 1974, 2271, 2457, 2955
Tth111I	GACNNNGTC	1 cut(s)	3671
Vha464I	CTTAAG	1 cut(s)	2150
VneI	GTGCAC	1 cut(s)	1758
VpaK11BI	GGWCC	5 cut(s)	1832, 1940, 2747, 3039, 3386
XapI	RAATTY	8 cut(s)	111, 124, 421, 1075, 1823, 2239, 3064, 3737
XbaI	TCTAGA	2 cut(s)	2902, 3191
XceI	RCATGY	1 cut(s)	2072
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1711
XhoI	CTCGAG	2 cut(s)	1792, 3398
XmaI	CCCGGG	1 cut(s)	280
XmaJI	CCTAGG	1 cut(s)	1688
XmiI	GTMKAC	1 cut(s)	1177
XmnI	GAANNNNTTC	3 cut(s)	29, 1437, 2719
ZrmI	AGTACT	1 cut(s)	2026
Zsp2I	ATGCAT	1 cut(s)	2263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.