pycom16g12510

Craniofacial development protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0009635
Physical Location & Seq
Reverse (-)
8802680 .. 8803668
989 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 519 bp
ATGCATTACAAGAAGGGATCAAGTGTCTTGCCGAACAGCTCCAGCGACAATGGTGTGCAGGATAAATCTAATGACAAGGCCAGAAGGCTTGTTGCTGCTGCTCTTGTAGAAGTTAAGGATGCTGCAGTTGCAACATCTGGCAGACGGAAAGTTGAGATCACGGAGGTTCGGGATTTTGCTGGTCAAGAAATTGAATATAAGAAGCTTGTCGATGCTGATTCAAAGGAAGTATCCGAAAAGGCGAAAGCTCCTGCATCTTCAGGTGTCGATGCTTTCCTCGAACAGATTAAGAAGAAGCCAAAGCTCAGTGTGCTTGACAAAACGAAAAAGGACTGGGGGGAGTTTAAAGAAGAGAAAGGGTTGGAGGAGGAGTTGGAATCTTACAAGAAGAGTTCAAACCAATATTTGGACAAGGTAAACTTCTTGCAGCGAGCAGATTTCCGAGAGTTTGAACGGGAGAGGGATGCACAGCTGGCCGTGCAGGCCAAAGGGAAGCCATATATGCGGGAGGATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCNT

Protein Analysis

173

Amino Acids

19.45

Weight (kDa)

8.55

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCNT PF07572 87 - 158 6.7e-26 Bucentaur or craniofacial development
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 406
AciI CCGC 1 cut(s) 505
AclWI GGATC 2 cut(s) 25, 506
AcoI YGGCCR 1 cut(s) 474
AcuI CTGAAG 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 406
AgsI TTSAA 4 cut(s) 194, 222, 396, 452
AluBI AGCT 5 cut(s) 39, 205, 248, 304, 472
AluI AGCT 5 cut(s) 39, 205, 248, 304, 472
AlwI GGATC 2 cut(s) 25, 506
AoxI GGCC 3 cut(s) 78, 474, 483
ApeKI GCWGC 4 cut(s) 95, 98, 122, 427
BamHI GGATCC 1 cut(s) 511
BbvI GCAGC 4 cut(s) 82, 85, 109, 439
BceAI ACGGC 1 cut(s) 461
BciVI GTATCC 1 cut(s) 241
BfmI CTRYAG 1 cut(s) 123
BfuI GTATCC 1 cut(s) 241
BglI GCCNNNNNGGC 1 cut(s) 482
BisI GCNGC 4 cut(s) 96, 99, 123, 428
BlsI GCNGC 4 cut(s) 97, 100, 124, 429
BmiI GGNNCC 1 cut(s) 513
BmrI ACTGGG 1 cut(s) 343
BmsI GCATC 5 cut(s) 109, 202, 259, 263, 454
BmuI ACTGGG 1 cut(s) 343
BpmI CTGGAG 1 cut(s) 25
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse1I ACTGG 1 cut(s) 338
BseGI GGATG 2 cut(s) 124, 469
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMII CTCAG 1 cut(s) 319
BseNI ACTGG 1 cut(s) 338
BseRI GAGGAG 2 cut(s) 380, 383
BseXI GCAGC 4 cut(s) 82, 85, 109, 439
BsgI GTGCAG 2 cut(s) 77, 500
BshFI GGCC 3 cut(s) 80, 476, 485
BslI CCNNNNNNNGG 1 cut(s) 406
BsnI GGCC 3 cut(s) 80, 476, 485
Bsp143I GATC 3 cut(s) 17, 156, 511
BspACI CCGC 1 cut(s) 505
BspANI GGCC 3 cut(s) 80, 476, 485
BspCNI CTCAG 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 513
BspMAI CTGCAG 1 cut(s) 127
BspPI GGATC 2 cut(s) 25, 506
BsrI ACTGG 1 cut(s) 338
BssMI GATC 3 cut(s) 17, 156, 511
Bst6I CTCTTC 2 cut(s) 345, 383
BstC8I GCNNGC 3 cut(s) 432, 474, 483
BstDEI CTNAG 1 cut(s) 305
BstF5I GGATG 2 cut(s) 124, 469
BstKTI GATC 3 cut(s) 20, 159, 514
BstMBI GATC 3 cut(s) 17, 156, 511
BstMWI GCNNNNNNNGC 6 cut(s) 128, 310, 473, 478, 482, 502
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 4 cut(s) 82, 85, 109, 439
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
BsuI GTATCC 1 cut(s) 241
BsuRI GGCC 3 cut(s) 80, 476, 485
BtsCI GGATG 2 cut(s) 124, 469
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 3 cut(s) 432, 474, 483
DdeI CTNAG 1 cut(s) 305
DpnI GATC 3 cut(s) 19, 158, 513
DpnII GATC 3 cut(s) 17, 156, 511
DraI TTTAAA 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 2 cut(s) 345, 383
EarI CTCTTC 2 cut(s) 345, 383
Eco57I CTGAAG 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 5 cut(s) 198, 499, 501, 503, 517
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FauI CCCGC 1 cut(s) 498
Fnu4HI GCNGC 4 cut(s) 96, 99, 123, 428
FokI GGATG 2 cut(s) 131, 476
Fsp4HI GCNGC 4 cut(s) 96, 99, 123, 428
GluI GCNGC 4 cut(s) 96, 99, 123, 428
GsuI CTGGAG 1 cut(s) 25
HaeIII GGCC 3 cut(s) 80, 476, 485
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 2 cut(s) 218, 377
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 2 cut(s) 235, 443
Hpy188III TCNNGA 2 cut(s) 170, 185
Hpy8I GTNNAC 1 cut(s) 418
HpyAV CCTTC 2 cut(s) 7, 78
HpyCH4V TGCA 8 cut(s) 4, 58, 125, 131, 254, 427, 467, 481
HpyF10VI GCNNNNNNNGC 6 cut(s) 128, 310, 473, 478, 482, 502
HpyF3I CTNAG 1 cut(s) 305
Kzo9I GATC 3 cut(s) 17, 156, 511
LmnI GCTCC 2 cut(s) 44, 253
Lsp1109I GCAGC 4 cut(s) 82, 85, 109, 439
LweI GCATC 5 cut(s) 109, 202, 259, 263, 454
MalI GATC 3 cut(s) 19, 158, 513
MboI GATC 3 cut(s) 17, 156, 511
MboII GAAGA 4 cut(s) 249, 304, 362, 400
MflI RGATCY 1 cut(s) 511
MluCI AATT 1 cut(s) 189
MmeI TCCRAC 2 cut(s) 342, 354
MnlI CCTC 6 cut(s) 157, 287, 358, 361, 453, 502
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 114, 288, 345
MspA1I CMGCKG 1 cut(s) 472
MwoI GCNNNNNNNGC 6 cut(s) 128, 310, 473, 478, 482, 502
NdeII GATC 3 cut(s) 17, 156, 511
NlaIV GGNNCC 1 cut(s) 513
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 2 cut(s) 218, 377
PflMI CCANNNNNTGG 1 cut(s) 406
PkrI GCNGC 4 cut(s) 97, 100, 124, 429
PspN4I GGNNCC 1 cut(s) 513
PstI CTGCAG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 511
PvuII CAGCTG 1 cut(s) 472
SaqAI TTAA 3 cut(s) 114, 288, 345
SatI GCNGC 4 cut(s) 96, 99, 123, 428
Sau3AI GATC 3 cut(s) 17, 156, 511
SetI ASST 8 cut(s) 41, 168, 207, 250, 265, 306, 417, 474
SfaNI GCATC 5 cut(s) 109, 202, 259, 263, 454
SfcI CTRYAG 1 cut(s) 123
SfiI GGCCNNNNNGGCC 1 cut(s) 482
Sse9I AATT 1 cut(s) 189
SsiI CCGC 1 cut(s) 505
SspI AATATT 1 cut(s) 404
TaqI TCGA 3 cut(s) 210, 267, 279
TasI AATT 1 cut(s) 189
TfiI GAWTC 2 cut(s) 218, 377
Tru1I TTAA 3 cut(s) 114, 288, 345
Tru9I TTAA 3 cut(s) 114, 288, 345
TscAI CASTG 1 cut(s) 313
TseI GCWGC 4 cut(s) 95, 98, 122, 427
TspGWI ACGGA 2 cut(s) 160, 176
TspRI CASTG 1 cut(s) 313
Van91I CCANNNNNTGG 1 cut(s) 406
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.