Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010023

Physical Location & Seq

Genomic Coordinates Forward (+)

8923251 .. 8925194

Gene Structure 1944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGATGAAGCGGATGGATCAGATGATGGACCTGCGAAGAGGTCCTTGGACGGTTGAGGAGGACCTAGCTCTCATGAATTACATTGCTAACCACGGCGAAGGCCGCTGGAACTCCCTCGCTCGCAGCGCAGGTCTGAAAAGAACCGGAAAGAGCTGCAGATTACGGTGGCTCAACTATCTCCGCCCCGATGTCCGTCGTGGCAACATCACCCTTGAAGAACAGCTTCTGATTCTTGAGCTTCATTCTCGCTGGGGTAACAGATGGTCAAAAATTGCACAGCACTTGCCAGGAAGGACTGACAATGAGATAAAAAACTATTGGAGGACCCGTGTCCAAAAACACGCCAAGCAACTCAAATGTGATGTCAACAGCAAGCAGTTCAAGGACACCATGAGGTACCTCTGGATGCCTAGATTGGTTGAAAGAATTCAAGCCGCCGCGGCTGCCTCCACCACCACCAACGCCACCGCAACAGATTCCTCTATTGCCGCCCCGGCTACCTCTCACCACTTCAGCAACAACTTCCAGTCTTCAGCACAAATGTTATTACAGCCAAGTCATCATCATCACTTCGGGGTTTCCTCACAGTCACAACTCACACCGAGTTACAATACCCCGGAGAATTCTAGTACGGCAGCCTCATCGGACTCGTTTGGGACTCAGGTGTCACCTGTTTCCGACCTCACTGATTATTACACCCCTACTGCTGCTGCTGCTGCTATCTCGGTTAACAATAACCCTACCCCGGATAATAGTTACTTCGTCCAAGACAATCATCAAGTTGGTAATTACGACAACTACTCGGGGTCCTTCGGTAATCAAGGGTTGGTATTAGAACATTTCCAAACCATGGACGAGCAAAACAACAATTATCAGTGGGGCACTGTGGAAGGCGGGGACATATCGGACAATTGGTGGAATGTTGAGGACATGTGGTTCTTACAACAGCAGCTCAGCAGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

322

Amino Acids

36.58

Weight (kDa)

6.63

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 60	4.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	16 - 73	9e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	66 - 109	1.1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 112	4.4e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48000 AT3G06490 AT5G49620 AT5G49620
fragaria_vesca	FvH4_4g20750 FvH4_4g20750
malus_domestica	MD13G1148200.v1.1 MD16G1148300.v1.1
prunus_persica	Prupe.1G111700_v2.0.a1
pyrus_communis	pycom13g12760 pycom16g12660
rosa_chinensis	RchiOBHm_Chr4g0426181
rosa_laevigata	RLG00000007312
rosa_multiflora	Rmu_sc0000730.1_g000023
rosa_roxburghii	Rroxscaffold_5G00368200
rosa_rugosa	Rorug04G0209500
rosa_samantha	Rh4AG266200 Rh4BG272300 Rh4CG285300 Rh4DG268400
rosa_wichuraiana	Rw4G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	664
Acc36I	ACCTGC	2 cut(s)	39, 119
Acc65I	GGTACC	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	396
AccB7I	CCANNNNNTGG	1 cut(s)	850
AccII	CGCG	1 cut(s)	440
AciI	CCGC	9 cut(s)	10, 103, 181, 435, 438, 440, 468, 489, 894
AclWI	GGATC	1 cut(s)	24
AcsI	RAATTY	2 cut(s)	426, 622
AcuI	CTGAAG	2 cut(s)	496, 516
AfaI	GTAC	2 cut(s)	398, 631
AfiI	CCNNNNNNNGG	2 cut(s)	745, 850
AflIII	ACRYGT	1 cut(s)	930
AgsI	TTSAA	4 cut(s)	215, 382, 422, 431
AjnI	CCWGG	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
AloI	GAACNNNNNNTCC	2 cut(s)	920, 952
AluBI	AGCT	5 cut(s)	68, 153, 223, 238, 952
AluI	AGCT	5 cut(s)	68, 153, 223, 238, 952
AlwI	GGATC	1 cut(s)	24
AlwNI	CAGNNNCTG	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	802
AoxI	GGCC	1 cut(s)	100
ApoI	RAATTY	2 cut(s)	426, 622
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
Asp700I	GAANNNNTTC	2 cut(s)	222, 426
Asp718I	GGTACC	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	5 cut(s)	28, 41, 61, 324, 807
AsuC2I	CCSGG	3 cut(s)	494, 617, 746
AsuHPI	GGTGA	3 cut(s)	199, 497, 660
AvaI	CYCGRG	1 cut(s)	802
AvaII	GGWCC	5 cut(s)	28, 41, 61, 324, 807
BaeGI	GKGCMC	1 cut(s)	884
BanI	GGYRCC	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	522
BbvI	GCAGC	9 cut(s)	135, 140, 430, 647, 694, 697, 700, 703, 961
BccI	CCATC	3 cut(s)	7, 19, 255
BceAI	ACGGC	2 cut(s)	109, 648
BcgI	CGANNNNNNTGC	2 cut(s)	624, 658
BciT130I	CCWGG	1 cut(s)	288
BcnI	CCSGG	3 cut(s)	494, 617, 746
BfaI	CTAG	3 cut(s)	65, 411, 627
BfmI	CTRYAG	1 cut(s)	154
BfuAI	ACCTGC	2 cut(s)	39, 119
BglI	GCCNNNNNGGC	2 cut(s)	440, 494
BlpI	GCTNAGC	1 cut(s)	953
Bme1390I	CCNGG	4 cut(s)	288, 494, 617, 746
Bme18I	GGWCC	5 cut(s)	28, 41, 61, 324, 807
BmeT110I	CYCGRG	1 cut(s)	802
BmgT120I	GGNCC	5 cut(s)	28, 41, 61, 324, 807
BmiI	GGNNCC	3 cut(s)	326, 398, 808
BmrFI	CCNGG	4 cut(s)	288, 494, 617, 746
BmsI	GCATC	1 cut(s)	396
BoxI	GACNNNNGTC	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	522
Bpu1102I	GCTNAGC	1 cut(s)	953
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	3 cut(s)	494, 617, 746
BsaJI	CCNNGG	7 cut(s)	44, 91, 438, 492, 615, 744, 849
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	745, 850
Bse1I	ACTGG	1 cut(s)	526
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	7 cut(s)	44, 91, 438, 492, 615, 744, 849
BseGI	GGATG	2 cut(s)	18, 411
BseLI	CCNNNNNNNGG	2 cut(s)	745, 850
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	674
BseNI	ACTGG	1 cut(s)	526
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	1 cut(s)	884
BseXI	GCAGC	9 cut(s)	135, 140, 430, 647, 694, 697, 700, 703, 961
BseYI	CCCAGC	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	440
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	802
BsiSI	CCGG	4 cut(s)	144, 494, 617, 746
BslFI	GGGAC	2 cut(s)	670, 911
BslI	CCNNNNNNNGG	2 cut(s)	745, 850
BsmFI	GGGAC	2 cut(s)	670, 911
BsnI	GGCC	1 cut(s)	102
BsoBI	CYCGRG	1 cut(s)	802
Bsp1286I	GDGCHC	1 cut(s)	884
Bsp143I	GATC	1 cut(s)	16
Bsp1720I	GCTNAGC	1 cut(s)	953
Bsp19I	CCATGG	1 cut(s)	849
BspACI	CCGC	9 cut(s)	10, 103, 181, 435, 438, 440, 468, 489, 894
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	2 cut(s)	673, 966
BspFNI	CGCG	1 cut(s)	440
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	3 cut(s)	326, 398, 808
BspMAI	CTGCAG	1 cut(s)	158
BspMI	ACCTGC	2 cut(s)	39, 119
BspPI	GGATC	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	526
BssECI	CCNNGG	7 cut(s)	44, 91, 438, 492, 615, 744, 849
BssMI	GATC	1 cut(s)	16
BssT1I	CCWWGG	2 cut(s)	44, 849
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	4 cut(s)	52, 165, 588, 886
Bst6I	CTCTTC	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	121, 374
BstDEI	CTNAG	2 cut(s)	660, 953
BstDSI	CCRYGG	3 cut(s)	91, 438, 849
BstF5I	GGATG	2 cut(s)	18, 411
BstFNI	CGCG	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	7 cut(s)	102, 125, 440, 443, 494, 713, 716
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	934
BstPAI	GACNNNNGTC	1 cut(s)	329
BstSCI	CCNGG	4 cut(s)	286, 492, 615, 744
BstSFI	CTRYAG	1 cut(s)	154
BstSLI	GKGCMC	1 cut(s)	884
BstUI	CGCG	1 cut(s)	440
BstV1I	GCAGC	9 cut(s)	135, 140, 430, 647, 694, 697, 700, 703, 961
BstV2I	GAAGAC	1 cut(s)	522
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	3 cut(s)	91, 438, 849
BtsCI	GGATG	2 cut(s)	18, 411
BtsIMutI	CAGTG	3 cut(s)	684, 881, 882
BveI	ACCTGC	2 cut(s)	39, 119
Cac8I	GCNNGC	2 cut(s)	121, 374
CaiI	CAGNNNCTG	1 cut(s)	226
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	5 cut(s)	28, 41, 61, 324, 807
Cfr42I	CCGCGG	1 cut(s)	441
Csp6I	GTAC	2 cut(s)	397, 630
CviAII	CATG	4 cut(s)	73, 391, 850, 931
CviQI	GTAC	2 cut(s)	397, 630
DdeI	CTNAG	2 cut(s)	660, 953
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
DrdI	GACNNNNNNGTC	1 cut(s)	664
DseDI	GACNNNNNNGTC	1 cut(s)	664
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
EciI	GGCGGA	1 cut(s)	170
Eco130I	CCWWGG	2 cut(s)	44, 849
Eco47I	GGWCC	5 cut(s)	28, 41, 61, 324, 807
Eco57I	CTGAAG	2 cut(s)	496, 516
Eco88I	CYCGRG	1 cut(s)	802
EcoO109I	RGGNCCY	4 cut(s)	41, 61, 324, 807
EcoRI	GAATTC	2 cut(s)	426, 622
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	2 cut(s)	44, 849
ErhI	CCWWGG	2 cut(s)	44, 849
FaeI	CATG	4 cut(s)	76, 394, 853, 934
FaiI	YATR	5 cut(s)	74, 392, 851, 902, 932
FalI	AAGNNNNNCTT	4 cut(s)	28, 60, 207, 239
FaqI	GGGAC	2 cut(s)	670, 911
FatI	CATG	4 cut(s)	72, 390, 849, 930
FauI	CCCGC	1 cut(s)	887
FokI	GGATG	2 cut(s)	25, 418
FspBI	CTAG	3 cut(s)	65, 411, 627
GlaI	GCGC	1 cut(s)	127
GsaI	CCCAGC	1 cut(s)	253
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	4 cut(s)	144, 494, 617, 746
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	4 cut(s)	76, 394, 853, 934
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	2 cut(s)	367, 730
HindII	GTYRAC	2 cut(s)	367, 730
HinfI	GANTC	4 cut(s)	229, 476, 647, 658
HpaI	GTTAAC	1 cut(s)	730
HpaII	CCGG	4 cut(s)	144, 494, 617, 746
HphI	GGTGA	3 cut(s)	199, 497, 660
Hpy166II	GTNNAC	2 cut(s)	367, 730
Hpy188I	TCNGA	6 cut(s)	21, 135, 228, 646, 679, 907
Hpy188III	TCNNGA	3 cut(s)	73, 233, 403
Hpy8I	GTNNAC	2 cut(s)	367, 730
Hpy99I	CGWCG	1 cut(s)	198
HpyAV	CCTTC	4 cut(s)	92, 285, 820, 884
HpyCH4III	ACNGT	4 cut(s)	52, 165, 588, 886
HpyCH4V	TGCA	2 cut(s)	156, 275
HpyF10VI	GCNNNNNNNGC	7 cut(s)	102, 125, 440, 443, 494, 713, 716
HpyF3I	CTNAG	2 cut(s)	660, 953
Hsp92II	CATG	4 cut(s)	76, 394, 853, 934
HspAI	GCGC	1 cut(s)	126
KpnI	GGTACC	1 cut(s)	400
KspAI	GTTAAC	1 cut(s)	730
KspI	CCGCGG	1 cut(s)	441
Kzo9I	GATC	1 cut(s)	16
Lsp1109I	GCAGC	9 cut(s)	135, 140, 430, 647, 694, 697, 700, 703, 961
LweI	GCATC	1 cut(s)	396
MaeI	CTAG	3 cut(s)	65, 411, 627
MaeIII	GTNAC	5 cut(s)	254, 588, 605, 666, 755
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	3 cut(s)	48, 227, 522
MfeI	CAATTG	1 cut(s)	910
MhlI	GDGCHC	1 cut(s)	884
MluCI	AATT	7 cut(s)	76, 270, 426, 622, 787, 868, 910
MlyI	GAGTC	2 cut(s)	641, 652
MmeI	TCCRAC	1 cut(s)	702
MroXI	GAANNNNTTC	2 cut(s)	222, 426
MseI	TTAA	1 cut(s)	729
MspA1I	CMGCKG	2 cut(s)	105, 440
MspI	CCGG	4 cut(s)	144, 494, 617, 746
MspR9I	CCNGG	4 cut(s)	288, 494, 617, 746
MunI	CAATTG	1 cut(s)	910
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	7 cut(s)	102, 125, 440, 443, 494, 713, 716
NciI	CCSGG	3 cut(s)	494, 617, 746
NcoI	CCATGG	1 cut(s)	849
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	4 cut(s)	76, 394, 853, 934
NlaIV	GGNNCC	3 cut(s)	326, 398, 808
NmuCI	GTSAC	2 cut(s)	588, 666
NspI	RCATGY	1 cut(s)	934
PagI	TCATGA	1 cut(s)	72
PciI	ACATGT	1 cut(s)	930
PdmI	GAANNNNTTC	2 cut(s)	222, 426
PfeI	GAWTC	2 cut(s)	229, 476
PflMI	CCANNNNNTGG	1 cut(s)	850
PleI	GAGTC	2 cut(s)	641, 652
PpsI	GAGTC	2 cut(s)	641, 652
PpuMI	RGGWCCY	4 cut(s)	41, 61, 324, 807
PscI	ACATGT	1 cut(s)	930
PshAI	GACNNNNGTC	1 cut(s)	329
Psp5II	RGGWCCY	4 cut(s)	41, 61, 324, 807
Psp6I	CCWGG	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	3 cut(s)	326, 398, 808
PspPI	GGNCC	5 cut(s)	28, 41, 61, 324, 807
PspPPI	RGGWCCY	4 cut(s)	41, 61, 324, 807
PstI	CTGCAG	1 cut(s)	158
PstNI	CAGNNNCTG	1 cut(s)	226
RsaI	GTAC	2 cut(s)	398, 631
RsaNI	GTAC	2 cut(s)	397, 630
SacII	CCGCGG	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	729
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	5 cut(s)	28, 41, 61, 324, 807
SchI	GAGTC	2 cut(s)	641, 652
ScrFI	CCNGG	4 cut(s)	288, 494, 617, 746
SduI	GDGCHC	1 cut(s)	884
SfaNI	GCATC	1 cut(s)	396
SfcI	CTRYAG	1 cut(s)	154
Sfr303I	CCGCGG	1 cut(s)	441
SgrBI	CCGCGG	1 cut(s)	441
SinI	GGWCC	5 cut(s)	28, 41, 61, 324, 807
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	7 cut(s)	76, 270, 426, 622, 787, 868, 910
SsiI	CCGC	9 cut(s)	10, 103, 181, 435, 438, 440, 468, 489, 894
SspMI	CTAG	3 cut(s)	65, 411, 627
StyD4I	CCNGG	4 cut(s)	286, 492, 615, 744
StyI	CCWWGG	2 cut(s)	44, 849
TaaI	ACNGT	4 cut(s)	52, 165, 588, 886
TasI	AATT	7 cut(s)	76, 270, 426, 622, 787, 868, 910
TauI	GCSGC	5 cut(s)	105, 437, 440, 443, 491
TfiI	GAWTC	2 cut(s)	229, 476
Tru1I	TTAA	1 cut(s)	729
Tru9I	TTAA	1 cut(s)	729
TscAI	CASTG	3 cut(s)	691, 881, 889
TseFI	GTSAC	2 cut(s)	588, 666
Tsp45I	GTSAC	2 cut(s)	588, 666
TspDTI	ATGAA	3 cut(s)	20, 89, 230
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	3 cut(s)	691, 881, 889
Van91I	CCANNNNNTGG	1 cut(s)	850
VpaK11BI	GGWCC	5 cut(s)	28, 41, 61, 324, 807
XapI	RAATTY	2 cut(s)	426, 622
XceI	RCATGY	1 cut(s)	934
XmnI	GAANNNNTTC	2 cut(s)	222, 426
XspI	CTAG	3 cut(s)	65, 411, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.