pycom16g13340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011771
Physical Location & Seq
Forward (+)
9490222 .. 9491486
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 648 bp
ATGTTTGTTCAAGGTGACAATCAATGCATGTATATGAGAGAATTTGGTAAAATCACAGCTGAAATAAGATTTATGTTCAAGAAAGTAGAATGTTGCTCTAGTTTGCAAGCTTCTGTCATGGCATTAACGATGAACCAACTCTCAGTTTTAGCTGCAGCTTTCATCTGCATCTCTCTTTTCTGCTGCAGAACTGGGATGGCTGATGATTATACACCTGAAAGAGGTTATGAGCCAGAAAAAGGCACTGAACTCCAGGATCCAACTCAAATTGTAGACAAAGCCTTGCTGTGTTTCAATGATAAATATGTTTACAGCAGCTGTGAAGAGTCTTACAGATTGAATGAGGGTGGAAATCTGAAGGTACCTGCAGAAAAAACTGATGAATACTGCAATGGTCCTTGCTTGACGGAGACACACCTTTTGCTCGATTGTCTTGAAAACGTCATGACCAGCTTCCTGTTTTACAACAAGGCCACGATTCAAGACGTTCGAGACACGATTCATGCCGGATGCGGCCACAGCGAAGAAAGAGGTAAATTCGATGTGGTTGAGCACATGAGAGCTGAAGGAAGCAAAGCACACAAGGCTGTAAACCAGATTCTAATTGGGATTGTGTTGATGATTGCGGGGACTGGATTACTGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

216

Amino Acids

24.1

Weight (kDa)

5.06

Isoelectric Point (pI)

29.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7731 PF24865 87 - 186 2e-44 Domain of unknown function (DUF7731)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011771)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49350 AT5G49350
fragaria_vesca FvH4_4g19330
malus_domestica MD13G1157600.v1.1 MD16G1158500.v1.1
prunus_persica Prupe.1G123300_v2.0.a1
pyrus_communis pycom13g13490 pycom16g13340
rosa_chinensis RchiOBHm_Chr4g0424351
rosa_laevigata RLG00000007482
rosa_multiflora Rmu_sc0005995.1_g000010
rosa_roxburghii Rroxscaffold_5G00366300
rosa_rugosa Rorug04G0196600 Rorug04G0196700
rosa_samantha Rh4AG253000 Rh4BG258400 Rh4CG269400 Rh4DG252800
rosa_wichuraiana Rw4G021820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 373
Acc65I GGTACC 1 cut(s) 361
AccB1I GGYRCC 1 cut(s) 361
AccI GTMKAC 1 cut(s) 273
AciI CCGC 2 cut(s) 513, 626
AclWI GGATC 2 cut(s) 251, 264
AcoI YGGCCR 1 cut(s) 514
AcsI RAATTY 2 cut(s) 41, 536
AcuI CTGAAG 2 cut(s) 377, 585
AfaI GTAC 2 cut(s) 363, 644
AfiI CCNNNNNNNGG 2 cut(s) 221, 239
AgsI TTSAA 6 cut(s) 11, 79, 295, 340, 437, 482
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 7 cut(s) 59, 110, 152, 158, 318, 453, 563
AluI AGCT 7 cut(s) 59, 110, 152, 158, 318, 453, 563
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 2 cut(s) 404, 486
AlwI GGATC 2 cut(s) 251, 264
AlwNI CAGNNNCTG 1 cut(s) 318
AoxI GGCC 2 cut(s) 471, 514
ApeKI GCWGC 4 cut(s) 152, 155, 183, 315
ApoI RAATTY 2 cut(s) 41, 536
ArsI GACNNNNNNTTYG 2 cut(s) 403, 435
Asp718I GGTACC 1 cut(s) 361
AspS9I GGNCC 1 cut(s) 395
AsuHPI GGTGA 1 cut(s) 26
AvaII GGWCC 1 cut(s) 395
BamHI GGATCC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 361
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 4 cut(s) 139, 167, 170, 327
BccI CCATC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 254
BcoDI GTCTC 2 cut(s) 404, 486
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 3 cut(s) 153, 184, 366
BfuAI ACCTGC 1 cut(s) 373
BisI GCNGC 5 cut(s) 153, 156, 184, 316, 514
BlsI GCNGC 5 cut(s) 154, 157, 185, 317, 515
Bme1390I CCNGG 1 cut(s) 254
Bme18I GGWCC 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 2 cut(s) 258, 363
BmrFI CCNGG 1 cut(s) 254
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 2 cut(s) 177, 500
BmuI ACTGGG 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 236
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 239
Bse1I ACTGG 2 cut(s) 196, 637
Bse3DI GCAATG 1 cut(s) 397
BseBI CCWGG 1 cut(s) 254
BseGI GGATG 2 cut(s) 201, 515
BseLI CCNNNNNNNGG 2 cut(s) 221, 239
BseMI GCAATG 1 cut(s) 397
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 2 cut(s) 196, 637
BseXI GCAGC 4 cut(s) 139, 167, 170, 327
BshFI GGCC 2 cut(s) 473, 516
BshNI GGYRCC 1 cut(s) 361
BsiHKAI GWGCWC 1 cut(s) 555
BsiSI CCGG 1 cut(s) 507
BslFI GGGAC 1 cut(s) 643
BslI CCNNNNNNNGG 2 cut(s) 221, 239
BsmAI GTCTC 2 cut(s) 404, 486
BsmFI GGGAC 1 cut(s) 643
BsnI GGCC 2 cut(s) 473, 516
Bsp1286I GDGCHC 1 cut(s) 555
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 2 cut(s) 513, 626
BspANI GGCC 2 cut(s) 473, 516
BspCNI CTCAG 1 cut(s) 155
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 2 cut(s) 258, 363
BspMAI CTGCAG 3 cut(s) 157, 188, 370
BspMI ACCTGC 1 cut(s) 373
BspPI GGATC 2 cut(s) 251, 264
BspT107I GGYRCC 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 397
BsrI ACTGG 2 cut(s) 196, 637
BssMI GATC 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 642
Bst6I CTCTTC 1 cut(s) 318
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 142
BstENI CCTNNNNNAGG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 201, 515
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 2 cut(s) 404, 486
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 2 cut(s) 519, 584
BstNI CCWGG 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 252
BstSFI CTRYAG 3 cut(s) 153, 184, 366
BstV1I GCAGC 4 cut(s) 139, 167, 170, 327
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 2 cut(s) 473, 516
BtsCI GGATG 2 cut(s) 201, 515
BtsIMutI CAGTG 1 cut(s) 243
BveI ACCTGC 1 cut(s) 373
Cac8I GCNNGC 1 cut(s) 108
CaiI CAGNNNCTG 1 cut(s) 318
CciI TCATGA 1 cut(s) 444
Cfr13I GGNCC 1 cut(s) 395
Csp6I GTAC 2 cut(s) 362, 643
CviAII CATG 5 cut(s) 28, 118, 445, 503, 556
CviQI GTAC 2 cut(s) 362, 643
DdeI CTNAG 1 cut(s) 142
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
EaeI YGGCCR 1 cut(s) 514
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 395
Eco57I CTGAAG 2 cut(s) 377, 585
EcoNI CCTNNNNNAGG 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 252
EcoT22I ATGCAT 1 cut(s) 29
FaeI CATG 5 cut(s) 31, 121, 448, 506, 559
FaqI GGGAC 1 cut(s) 643
FatI CATG 5 cut(s) 27, 117, 444, 502, 555
FauI CCCGC 1 cut(s) 619
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 5 cut(s) 153, 156, 184, 316, 514
FokI GGATG 2 cut(s) 208, 522
Fsp4HI GCNGC 5 cut(s) 153, 156, 184, 316, 514
FspBI CTAG 1 cut(s) 99
GluI GCNGC 5 cut(s) 153, 156, 184, 316, 514
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 2 cut(s) 473, 516
HapII CCGG 1 cut(s) 507
Hin1II CATG 5 cut(s) 31, 121, 448, 506, 559
HindIII AAGCTT 1 cut(s) 108
HinfI GANTC 4 cut(s) 326, 478, 499, 598
HpaII CCGG 1 cut(s) 507
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 3 cut(s) 274, 310, 592
Hpy188I TCNGA 1 cut(s) 357
Hpy188III TCNNGA 5 cut(s) 79, 434, 445, 482, 491
Hpy8I GTNNAC 3 cut(s) 274, 310, 592
HpyAV CCTTC 2 cut(s) 352, 560
HpyCH4III ACNGT 1 cut(s) 642
HpyCH4IV ACGT 2 cut(s) 441, 486
HpyCH4V TGCA 7 cut(s) 27, 106, 155, 168, 186, 368, 390
HpyF10VI GCNNNNNNNGC 2 cut(s) 519, 584
HpyF3I CTNAG 1 cut(s) 142
HpySE526I ACGT 2 cut(s) 441, 486
Hsp92II CATG 5 cut(s) 31, 121, 448, 506, 559
KpnI GGTACC 1 cut(s) 365
Kzo9I GATC 1 cut(s) 256
Lsp1109I GCAGC 4 cut(s) 139, 167, 170, 327
LweI GCATC 2 cut(s) 177, 500
MaeI CTAG 1 cut(s) 99
MaeII ACGT 2 cut(s) 441, 486
MaeIII GTNAC 1 cut(s) 14
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 2 cut(s) 335, 536
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 4 cut(s) 41, 267, 536, 603
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 3 cut(s) 215, 337, 524
Mph1103I ATGCAT 1 cut(s) 29
MseI TTAA 1 cut(s) 125
MslI CAYNNNNRTG 1 cut(s) 32
MspA1I CMGCKG 2 cut(s) 59, 318
MspI CCGG 1 cut(s) 507
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 519, 584
NdeII GATC 1 cut(s) 256
NlaIII CATG 5 cut(s) 31, 121, 448, 506, 559
NlaIV GGNNCC 2 cut(s) 258, 363
NmuCI GTSAC 1 cut(s) 14
NsiI ATGCAT 1 cut(s) 29
NspI RCATGY 1 cut(s) 31
PagI TCATGA 1 cut(s) 444
PfeI GAWTC 3 cut(s) 478, 499, 598
PfoI TCCNGGA 1 cut(s) 252
PkrI GCNGC 5 cut(s) 154, 157, 185, 317, 515
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 2 cut(s) 258, 363
PspPI GGNCC 1 cut(s) 395
PstI CTGCAG 3 cut(s) 157, 188, 370
PstNI CAGNNNCTG 1 cut(s) 318
PsuI RGATCY 1 cut(s) 256
PvuII CAGCTG 2 cut(s) 59, 318
RsaI GTAC 2 cut(s) 363, 644
RsaNI GTAC 2 cut(s) 362, 643
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 5 cut(s) 153, 156, 184, 316, 514
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 1 cut(s) 395
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 1 cut(s) 555
SfaNI GCATC 2 cut(s) 177, 500
SfcI CTRYAG 3 cut(s) 153, 184, 366
SinI GGWCC 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 32
Sse9I AATT 4 cut(s) 41, 267, 536, 603
SsiI CCGC 2 cut(s) 513, 626
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 642
TaiI ACGT 2 cut(s) 444, 489
TaqI TCGA 3 cut(s) 426, 490, 540
TasI AATT 4 cut(s) 41, 267, 536, 603
TatI WGTACW 1 cut(s) 642
TauI GCSGC 1 cut(s) 516
TfiI GAWTC 3 cut(s) 478, 499, 598
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 4 cut(s) 152, 155, 183, 315
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 4 cut(s) 146, 151, 396, 491
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 395
XagI CCTNNNNNAGG 1 cut(s) 219
XapI RAATTY 2 cut(s) 41, 536
XceI RCATGY 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 602
XmiI GTMKAC 1 cut(s) 273
XspI CTAG 1 cut(s) 99
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.