pycom16g13440
MYB Family

Two-component response regulator

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
9618158 .. 9621281
3124 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1905 bp
ATGATCCTACTTGCCTTATCGATCTTGGAGAGGATGCTCAGAACTTGCCTCTATGAAGTGACAAAATGTAATCGTGCGGAGATCGCACTTTCGTTGCTTCGAGAGAACAAGAACGGATTCGATATTGTTATCAGTGATGTGCACATGCCAGACATGGATGGATTCAATCTCCTAGAGCACGTTGGACTGGAGATGGACCTGCCTGTTATTAATGATGGAAAAAGTGTTGTTATGAAGGGTGTGACTCATGGTGCTTGTGATTACCTAATCAAACCGGTTCGCATTGAGGCGCTGAAGAACATATGGCAGCATGTAGTGCGGAAGAAAAAGAACGAGTGGAAGGATGTGGAGCAATCTGGAAGTGTGGAAGAAGGGGATCGGCAGCAGAAACCATCCGAAGATGCAGATTACTCGTCCTCGGCAAATGAAGGGACTTGGAAGAACTCAAAGAGGAGGAAGGATGAGGAAGAAGAGACGGATGAGAGGGATGATTCATCCACATTAAAGAAGCCGCGGGTCGTTTGGTCAGTTGAACTTCATCAACAGTTTGTGGGCGCTGTCAATCAACTAGGCATTGATAAGGCTGTTCCTAAGAAAATTTTGGAGTTGATGAATGTTCCTGGGCTTACTAGAGAAAATGTTGCTAGCCATCTTCAGAAATACAGATTGTACCTTAGAAGGTTAAGTGGGGTGTCTCAGCACCCGAATAATTTGAGCAACTCCTTCATGAGTCCTCAAGAAGCGTCTTTCGGAGCAATGTCATCGCTCAGTGGGCTGGATCTTCAGACGCTAGCTGTCACTGGTCAACTCCCTGCTCAAAGCCTTGCCACACTCCAAGCAGCCGGACTTGGGAGGTCAACGACAAAATCAGGCGTACCTATGCCCCTTGTTGATCAAAGGAACTTATTCAGCTTTGAAAATCCAAAGTCGAGGTTTGCGGAAGGGCAACATCATCTGAGCAGTAGCAAACCGATGAACTTACTTCATGGGATTCCAACAACTATGGAGGCAAAACAGCTTGCGAACTTGCACCAGTCTGCACAATCTCTTGGGGCTGTCAATATGCAAGTCAATGCTCATGGAGTCCAGAACAGTTCTCTACTTATGCCGGTAGCTCAATCGCAGCCAAGAGGGCATATCTTGAATGAAACTTCTGGAAATCATGTTCCACGGCTCTCATCTTCAATGGGGCATCCCATCATGTCTAATGGTATGAGTAGTGGAGTTTCGGGAAGAAATGGAATGGTTGATAGCGGCAGAGGCGGAGGATATAATCCAATGCAACAAAACTCGTCAATGTTGAATTATCCCCTGAACAACAGTTCACAACTACCATGCAACAGTTTTACTCTTGGAAGTACACCAGTAATGTCCAGCCTCACGTCTAAAGGAGCATTTCCAGAAGATGTAAATTCTGACGTAAAAATATCTTCTGGATTTATGCCAAGTTATGATATGTTTAACGAGTTACAGCAGCACAAATCAAATGATTGGGACTTGCAGAATGTGGGATTGACTTTTGACCCCTCTCAACATACAAACTCCATGCACAATAGCCTTGATCCGTCAGTTTTAGTTCATCAAGGATTTTCTTCTAGCCAAAGAGGTGGACAAAGCAGGAGTCCAACTACCGTCGGAAAAGCTCTGTTCTCAATGGGCGAAGGCAGTCATCTTGGGAATGTGCAAAATACCGGTCAACATCTTAACGGTTTTGTTGTTGACAATACAGTTAGGATTAAAGCTGAAAGTGCCCCCGACGCAAATTCTCAAACTAGCTTCTTTCATGAACAATATGGTCAGGATGATCTAATGAGTGCTCTTCTCAAGCAGCAGCAAGATGGAATTGGACCCGCTGAAAATGAGTTTGACTTTGATGGGTATTCCTTGGATAATATTCCTGTGTAG

Protein Analysis

635

Amino Acids

69.47

Weight (kDa)

6.0

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 5 - 100 2.4e-11 Response regulator receiver domain
Myb_DNA-binding PF00249 172 - 222 7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 207
AccII CGCG 1 cut(s) 514
AciI CCGC 8 cut(s) 77, 319, 512, 514, 938, 1254, 1263, 1851
AclWI GGATC 3 cut(s) 384, 786, 1556
AcsI RAATTY 3 cut(s) 597, 1411, 1762
AcuI CTGAAG 3 cut(s) 314, 638, 767
AfaI GTAC 3 cut(s) 671, 876, 1360
AfiI CCNNNNNNNGG 1 cut(s) 849
AgeI ACCGGT 2 cut(s) 274, 1691
AgsI TTSAA 6 cut(s) 166, 533, 917, 1144, 1185, 1303
AjiI CACGTC 1 cut(s) 1383
AjnI CCWGG 1 cut(s) 619
AloI GAACNNNNNNTCC 2 cut(s) 1149, 1181
AluBI AGCT 7 cut(s) 794, 912, 1018, 1115, 1643, 1742, 1776
AluI AGCT 7 cut(s) 794, 912, 1018, 1115, 1643, 1742, 1776
Alw21I GWGCWC 3 cut(s) 144, 180, 1819
Alw26I GTCTC 2 cut(s) 467, 699
Alw44I GTGCAC 1 cut(s) 140
AlwI GGATC 3 cut(s) 384, 786, 1556
ApaLI GTGCAC 1 cut(s) 140
ApeKI GCWGC 7 cut(s) 307, 382, 839, 1123, 1474, 1828, 1831
ApoI RAATTY 3 cut(s) 597, 1411, 1762
ArsI GACNNNNNNTTYG 4 cut(s) 1606, 1638, 1678, 1710
AseI ATTAAT 1 cut(s) 210
AsiGI ACCGGT 2 cut(s) 274, 1691
Asp700I GAANNNNTTC 2 cut(s) 116, 905
AspLEI GCGC 2 cut(s) 292, 557
AspS9I GGNCC 2 cut(s) 196, 1847
AsuNHI GCTAGC 2 cut(s) 644, 790
AvaII GGWCC 2 cut(s) 196, 1847
BaeGI GKGCMC 2 cut(s) 144, 1753
Bbv12I GWGCWC 3 cut(s) 144, 180, 1819
BbvI GCAGC 7 cut(s) 319, 394, 851, 1135, 1486, 1840, 1843
BccI CCATC 8 cut(s) 152, 187, 209, 400, 657, 1205, 1832, 1868
BceAI ACGGC 1 cut(s) 1187
BcgI CGANNNNNNTGC 4 cut(s) 393, 427, 744, 778
BciT130I CCWGG 1 cut(s) 621
BclI TGATCA 1 cut(s) 892
BcoDI GTCTC 2 cut(s) 467, 699
BfaI CTAG 7 cut(s) 173, 569, 630, 645, 791, 1596, 1773
BfoI RGCGCY 2 cut(s) 293, 558
BfuAI ACCTGC 1 cut(s) 207
BglI GCCNNNNNGGC 1 cut(s) 1132
BisI GCNGC 9 cut(s) 308, 383, 512, 840, 1124, 1255, 1475, 1829, 1832
BlsI GCNGC 9 cut(s) 309, 384, 513, 841, 1125, 1256, 1476, 1830, 1833
Bme1390I CCNGG 1 cut(s) 621
Bme18I GGWCC 2 cut(s) 196, 1847
BmgBI CACGTC 1 cut(s) 1383
BmgT120I GGNCC 2 cut(s) 196, 1847
BmiI GGNNCC 1 cut(s) 1849
BmrFI CCNGG 1 cut(s) 621
BmsI GCATC 3 cut(s) 24, 391, 1201
BmtI GCTAGC 2 cut(s) 648, 794
BpmI CTGGAG 1 cut(s) 209
BpuEI CTTGAG 2 cut(s) 720, 1808
Bsa29I ATCGAT 1 cut(s) 20
BsaJI CCNNGG 5 cut(s) 417, 512, 620, 1169, 1884
BsaWI WCCGGW 2 cut(s) 274, 1691
Bsc4I CCNNNNNNNGG 1 cut(s) 849
Bse118I RCCGGY 3 cut(s) 274, 1108, 1691
Bse1I ACTGG 4 cut(s) 192, 805, 1033, 1364
Bse3DI GCAATG 1 cut(s) 762
BseBI CCWGG 1 cut(s) 621
BseCI ATCGAT 1 cut(s) 20
BseDI CCNNGG 5 cut(s) 417, 512, 620, 1169, 1884
BseLI CCNNNNNNNGG 1 cut(s) 849
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 4 cut(s) 52, 710, 781, 947
BseNI ACTGG 4 cut(s) 192, 805, 1033, 1364
BseRI GAGGAG 1 cut(s) 466
BseSI GKGCMC 2 cut(s) 144, 1753
BseXI GCAGC 7 cut(s) 319, 394, 851, 1135, 1486, 1840, 1843
BsgI GTGCAG 1 cut(s) 1023
Bsh1236I CGCG 1 cut(s) 514
BshTI ACCGGT 2 cut(s) 274, 1691
BshVI ATCGAT 1 cut(s) 20
BsiHKAI GWGCWC 3 cut(s) 144, 180, 1819
BsiSI CCGG 4 cut(s) 275, 843, 1109, 1692
BslFI GGGAC 2 cut(s) 445, 1508
BslI CCNNNNNNNGG 1 cut(s) 849
BsmAI GTCTC 2 cut(s) 467, 699
BsmBI CGTCTC 1 cut(s) 467
BsmFI GGGAC 2 cut(s) 445, 1508
Bsp1286I GDGCHC 4 cut(s) 144, 180, 1753, 1819
Bsp143I GATC 8 cut(s) 3, 21, 81, 376, 778, 892, 1561, 1804
BspACI CCGC 8 cut(s) 77, 319, 512, 514, 938, 1254, 1263, 1851
BspCNI CTCAG 4 cut(s) 51, 709, 780, 948
BspDI ATCGAT 1 cut(s) 20
BspFNI CGCG 1 cut(s) 514
BspHI TCATGA 2 cut(s) 726, 1783
BspLI GGNNCC 1 cut(s) 1849
BspMI ACCTGC 1 cut(s) 207
BspOI GCTAGC 2 cut(s) 648, 794
BspPI GGATC 3 cut(s) 384, 786, 1556
BspQI GCTCTTC 1 cut(s) 1824
BsrDI GCAATG 1 cut(s) 762
BsrFI RCCGGY 3 cut(s) 274, 1108, 1691
BsrI ACTGG 4 cut(s) 192, 805, 1033, 1364
BssAI RCCGGY 3 cut(s) 274, 1108, 1691
BssECI CCNNGG 5 cut(s) 417, 512, 620, 1169, 1884
BssMI GATC 8 cut(s) 3, 21, 81, 376, 778, 892, 1561, 1804
BssT1I CCWWGG 1 cut(s) 1884
Bst2UI CCWGG 1 cut(s) 621
Bst4CI ACNGT 7 cut(s) 546, 1094, 1322, 1343, 1633, 1709, 1729
Bst6I CTCTTC 2 cut(s) 465, 1824
BstAPI GCANNNNNTGC 1 cut(s) 316
BstC8I GCNNGC 3 cut(s) 646, 792, 1020
BstDEI CTNAG 6 cut(s) 38, 591, 674, 696, 767, 956
BstDSI CCRYGG 2 cut(s) 512, 1169
BstFNI CGCG 1 cut(s) 514
BstH2I RGCGCY 2 cut(s) 293, 558
BstHHI GCGC 2 cut(s) 292, 557
BstKTI GATC 8 cut(s) 6, 24, 84, 379, 781, 895, 1564, 1807
BstMAI GTCTC 2 cut(s) 467, 699
BstMBI GATC 8 cut(s) 3, 21, 81, 376, 778, 892, 1561, 1804
BstMWI GCNNNNNNNGC 7 cut(s) 83, 316, 772, 1132, 1260, 1748, 1757
BstNI CCWGG 1 cut(s) 621
BstNSI RCATGY 2 cut(s) 148, 314
BstSCI CCNGG 1 cut(s) 619
BstSLI GKGCMC 2 cut(s) 144, 1753
BstUI CGCG 1 cut(s) 514
BstV1I GCAGC 7 cut(s) 319, 394, 851, 1135, 1486, 1840, 1843
BstX2I RGATCY 1 cut(s) 778
BstXI CCANNNNNNTGG 1 cut(s) 1607
BstYI RGATCY 1 cut(s) 778
Bsu15I ATCGAT 1 cut(s) 20
BsuTUI ATCGAT 1 cut(s) 20
BtgI CCRYGG 2 cut(s) 512, 1169
BtgZI GCGATG 1 cut(s) 747
BtrI CACGTC 1 cut(s) 1383
BtsIMutI CAGTG 3 cut(s) 139, 775, 798
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 3 cut(s) 646, 792, 1020
CciI TCATGA 2 cut(s) 726, 1783
CfoI GCGC 2 cut(s) 292, 557
Cfr10I RCCGGY 3 cut(s) 274, 1108, 1691
Cfr13I GGNCC 2 cut(s) 196, 1847
Cfr42I CCGCGG 1 cut(s) 515
ClaI ATCGAT 1 cut(s) 20
CseI GACGC 3 cut(s) 732, 796, 1766
Csp6I GTAC 3 cut(s) 670, 875, 1359
CspAI ACCGGT 2 cut(s) 274, 1691
CviQI GTAC 3 cut(s) 670, 875, 1359
DdeI CTNAG 6 cut(s) 38, 591, 674, 696, 767, 956
DpnI GATC 8 cut(s) 5, 23, 83, 378, 780, 894, 1563, 1806
DpnII GATC 8 cut(s) 3, 21, 81, 376, 778, 892, 1561, 1804
Eam1104I CTCTTC 2 cut(s) 465, 1824
EarI CTCTTC 2 cut(s) 465, 1824
EciI GGCGGA 1 cut(s) 1278
Eco130I CCWWGG 1 cut(s) 1884
Eco47I GGWCC 2 cut(s) 196, 1847
Eco57I CTGAAG 3 cut(s) 314, 638, 767
EcoRII CCWGG 1 cut(s) 619
EcoT14I CCWWGG 1 cut(s) 1884
ErhI CCWWGG 1 cut(s) 1884
Esp3I CGTCTC 1 cut(s) 467
FaqI GGGAC 2 cut(s) 445, 1508
FauI CCCGC 2 cut(s) 507, 1858
FauNDI CATATG 1 cut(s) 302
FbaI TGATCA 1 cut(s) 892
Fnu4HI GCNGC 9 cut(s) 308, 383, 512, 840, 1124, 1255, 1475, 1829, 1832
Fsp4HI GCNGC 9 cut(s) 308, 383, 512, 840, 1124, 1255, 1475, 1829, 1832
FspBI CTAG 7 cut(s) 173, 569, 630, 645, 791, 1596, 1773
GlaI GCGC 2 cut(s) 291, 556
GluI GCNGC 9 cut(s) 308, 383, 512, 840, 1124, 1255, 1475, 1829, 1832
GsuI CTGGAG 1 cut(s) 209
HaeII RGCGCY 2 cut(s) 293, 558
HapII CCGG 4 cut(s) 275, 843, 1109, 1692
HgaI GACGC 3 cut(s) 732, 796, 1766
HhaI GCGC 2 cut(s) 292, 557
Hin6I GCGC 2 cut(s) 290, 555
HinP1I GCGC 2 cut(s) 290, 555
HincII GTYRAC 4 cut(s) 806, 858, 1697, 1720
HindII GTYRAC 4 cut(s) 806, 858, 1697, 1720
HinfI GANTC 8 cut(s) 117, 162, 244, 491, 730, 991, 1083, 1621
HpaII CCGG 4 cut(s) 275, 843, 1109, 1692
Hpy166II GTNNAC 8 cut(s) 142, 806, 858, 1325, 1361, 1610, 1697, 1720
Hpy188I TCNGA 8 cut(s) 41, 397, 657, 752, 786, 957, 1417, 1637
Hpy8I GTNNAC 8 cut(s) 142, 806, 858, 1325, 1361, 1610, 1697, 1720
Hpy99I CGWCG 2 cut(s) 1637, 1760
HpyAV CCTTC 9 cut(s) 229, 334, 365, 422, 451, 672, 733, 935, 1655
HpyCH4III ACNGT 7 cut(s) 546, 1094, 1322, 1343, 1633, 1709, 1729
HpyCH4IV ACGT 3 cut(s) 180, 1382, 1419
HpyF10VI GCNNNNNNNGC 7 cut(s) 83, 316, 772, 1132, 1260, 1748, 1757
HpyF3I CTNAG 6 cut(s) 38, 591, 674, 696, 767, 956
HpySE526I ACGT 3 cut(s) 180, 1382, 1419
HspAI GCGC 2 cut(s) 290, 555
Ksp22I TGATCA 1 cut(s) 892
KspI CCGCGG 1 cut(s) 515
Kzo9I GATC 8 cut(s) 3, 21, 81, 376, 778, 892, 1561, 1804
LguI GCTCTTC 1 cut(s) 1824
LmnI GCTCC 3 cut(s) 349, 752, 1391
Lsp1109I GCAGC 7 cut(s) 319, 394, 851, 1135, 1486, 1840, 1843
LweI GCATC 3 cut(s) 24, 391, 1201
MaeI CTAG 7 cut(s) 173, 569, 630, 645, 791, 1596, 1773
MaeII ACGT 3 cut(s) 180, 1382, 1419
MaeIII GTNAC 4 cut(s) 58, 241, 796, 1467
MalI GATC 8 cut(s) 5, 23, 83, 378, 780, 894, 1563, 1806
MboI GATC 8 cut(s) 3, 21, 81, 376, 778, 892, 1561, 1804
MflI RGATCY 1 cut(s) 778
MhlI GDGCHC 4 cut(s) 144, 180, 1753, 1819
MluCI AATT 6 cut(s) 597, 709, 1303, 1411, 1762, 1842
MlyI GAGTC 4 cut(s) 238, 739, 1092, 1630
MmeI TCCRAC 4 cut(s) 163, 1019, 1615, 1649
MroXI GAANNNNTTC 2 cut(s) 116, 905
MseI TTAA 6 cut(s) 210, 503, 683, 1461, 1704, 1737
MspA1I CMGCKG 2 cut(s) 514, 1853
MspI CCGG 4 cut(s) 275, 843, 1109, 1692
MspR9I CCNGG 1 cut(s) 621
MvaI CCWGG 1 cut(s) 621
MvnI CGCG 1 cut(s) 514
MwoI GCNNNNNNNGC 7 cut(s) 83, 316, 772, 1132, 1260, 1748, 1757
NdeI CATATG 1 cut(s) 302
NdeII GATC 8 cut(s) 3, 21, 81, 376, 778, 892, 1561, 1804
NheI GCTAGC 2 cut(s) 644, 790
NlaIV GGNNCC 1 cut(s) 1849
NmeAIII GCCGAG 1 cut(s) 398
NmuCI GTSAC 3 cut(s) 58, 241, 796
NspI RCATGY 2 cut(s) 148, 314
PagI TCATGA 2 cut(s) 726, 1783
PciSI GCTCTTC 1 cut(s) 1824
PdmI GAANNNNTTC 2 cut(s) 116, 905
PfeI GAWTC 4 cut(s) 117, 162, 491, 991
PinAI ACCGGT 2 cut(s) 274, 1691
PkrI GCNGC 9 cut(s) 309, 384, 513, 841, 1125, 1256, 1476, 1830, 1833
PleI GAGTC 4 cut(s) 238, 738, 1091, 1629
PpsI GAGTC 4 cut(s) 238, 738, 1091, 1629
PshBI ATTAAT 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 619
PspGI CCWGG 1 cut(s) 619
PspN4I GGNNCC 1 cut(s) 1849
PspPI GGNCC 2 cut(s) 196, 1847
PsuI RGATCY 1 cut(s) 778
RsaI GTAC 3 cut(s) 671, 876, 1360
RsaNI GTAC 3 cut(s) 670, 875, 1359
SacII CCGCGG 1 cut(s) 515
SapI GCTCTTC 1 cut(s) 1824
SaqAI TTAA 6 cut(s) 210, 503, 683, 1461, 1704, 1737
SatI GCNGC 9 cut(s) 308, 383, 512, 840, 1124, 1255, 1475, 1829, 1832
Sau3AI GATC 8 cut(s) 3, 21, 81, 376, 778, 892, 1561, 1804
Sau96I GGNCC 2 cut(s) 196, 1847
SchI GAGTC 4 cut(s) 238, 739, 1092, 1630
ScrFI CCNGG 1 cut(s) 621
SduI GDGCHC 4 cut(s) 144, 180, 1753, 1819
SfaNI GCATC 3 cut(s) 24, 391, 1201
Sfr303I CCGCGG 1 cut(s) 515
SgrBI CCGCGG 1 cut(s) 515
SinI GGWCC 2 cut(s) 196, 1847
SmlI CTYRAG 2 cut(s) 735, 1823
SmoI CTYRAG 2 cut(s) 735, 1823
Sse9I AATT 6 cut(s) 597, 709, 1303, 1411, 1762, 1842
SsiI CCGC 8 cut(s) 77, 319, 512, 514, 938, 1254, 1263, 1851
SspI AATATT 1 cut(s) 1894
SspMI CTAG 7 cut(s) 173, 569, 630, 645, 791, 1596, 1773
StyD4I CCNGG 1 cut(s) 619
StyI CCWWGG 1 cut(s) 1884
TaaI ACNGT 7 cut(s) 546, 1094, 1322, 1343, 1633, 1709, 1729
TaiI ACGT 3 cut(s) 183, 1385, 1422
TaqI TCGA 4 cut(s) 20, 100, 120, 929
TasI AATT 6 cut(s) 597, 709, 1303, 1411, 1762, 1842
TatI WGTACW 1 cut(s) 1358
TauI GCSGC 2 cut(s) 514, 1257
TfiI GAWTC 4 cut(s) 117, 162, 491, 991
Tru1I TTAA 6 cut(s) 210, 503, 683, 1461, 1704, 1737
Tru9I TTAA 6 cut(s) 210, 503, 683, 1461, 1704, 1737
TscAI CASTG 3 cut(s) 139, 775, 805
TseFI GTSAC 3 cut(s) 58, 241, 796
TseI GCWGC 7 cut(s) 307, 382, 839, 1123, 1474, 1828, 1831
Tsp45I GTSAC 3 cut(s) 58, 241, 796
TspGWI ACGGA 3 cut(s) 129, 491, 1554
TspRI CASTG 3 cut(s) 139, 775, 805
VneI GTGCAC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 196, 1847
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 3 cut(s) 597, 1411, 1762
XceI RCATGY 2 cut(s) 148, 314
XmnI GAANNNNTTC 2 cut(s) 116, 905
XspI CTAG 7 cut(s) 173, 569, 630, 645, 791, 1596, 1773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.