Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005479

Physical Location & Seq

Genomic Coordinates Forward (+)

33796022 .. 33800082

Gene Structure 4061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0194000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGATTTTGCTGTACATCGGATGCGTTACCTCTGTTCCCAAGCATTCTATTGATGTTGTCCCAATACAGATAGTGTGTCACAAGAGCAGTGATGATAAGGACTTTAATGATGACAAGGTTTTCAGATGTTTATGGAGAAATGCTCAGCAAGTAATTGAATCTACAAAGTCCTGTCCACCCAGTGCAATAAAATATCAGGATAACTTTTGTGTTTTCATACGTGAGATTTTGAGAAACAGTTCTCACCTCTTGACAGATGATGAAAAGGATTTCATCGAGCCGTTTACTTCGATGTCAGATGATAGTCAGAGGCTATTTGTTCGGCTTTATACACGGAAAGGTTTGTACTTTCCAGATCTTACAGGCATGGTTGTATTATTTTTATTTTCAATTATTCTGCTGAATACTAGACAGGGAATACATCTTGCTTTGAAACAAATAACTGATGATGATATTAAGGAGATCTTGGATTTGCTCACTGTATCTGAGCTACGTGAAATCTTGTGCATCCTTAAGCAGAGGCTTTTCTTCCTGAATGGTGAACAGGATCTCTCAGCATTTCTACTGGTGTATTTGGGAATTATCAAGTATCCAACTTACAAGTGCATAGTTTCAGAACAAATTTTCTCAGCTCAAGATGACTTGCTTGGCTATGAAGAGGCTATTGAAGTGGCACAAATAGTTGATGAAGCTCTTGATGGAAGCAACACTGGATTCGTCTTAAAGTGCATAAAAATAGCTGATTCCCATTTATCCAATCCCGTTCAATCCTTGACCTCTGAATCATGGCTCCATTCCTTTCCCACTTTTCAGCAACATTTGTCTACTCGAAAGTGGTTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

281

Amino Acids

32.35

Weight (kDa)

5.16

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAN1_HTH	PF21315	65 - 117	1.4e-08	FAN1, HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16857 AT3G16857 AT3G16857
fragaria_vesca	FvH4_4g19230 FvH4_4g19230
malus_domestica	MD13G1159700.v1.1 MD16G1159400.v1.1
prunus_persica	Prupe.1G126400_v2.0.a1 Prupe.1G126400_v2.0.a1
pyrus_communis	pycom13g13610 pycom16g13440
rosa_chinensis	RchiOBHm_Chr4g0424211
rosa_laevigata	RLG00000007496
rosa_multiflora	Rmu_co8430763.1_g000001 Rmu_sc0002260.1_g000035 Rmu_sc0019001.1_g000002 Rmu_sc0028069.1_g000001 Rmu_sc0028070.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366160
rosa_rugosa	Rorug04G0193900 Rorug04G0194000 Rorug04G0194100 Rorug04G0194200 Rorug04G0194300
rosa_samantha	Rh4AG251700 Rh4BG257000 Rh4CG267600 Rh4DG251400
rosa_wichuraiana	Rw4G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	824
AclWI	GGATC	1 cut(s)	555
AcsI	RAATTY	1 cut(s)	621
AdeI	CACNNNGTG	1 cut(s)	182
AfaI	GTAC	2 cut(s)	14, 347
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	5 cut(s)	158, 390, 433, 668, 767
AluBI	AGCT	4 cut(s)	490, 632, 692, 740
AluI	AGCT	4 cut(s)	490, 632, 692, 740
AlwI	GGATC	1 cut(s)	555
ApoI	RAATTY	1 cut(s)	621
Asp700I	GAANNNNTTC	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	236, 551
BccI	CCATC	1 cut(s)	692
BceAI	ACGGC	1 cut(s)	265
BciVI	GTATCC	1 cut(s)	600
BfaI	CTAG	2 cut(s)	408, 844
BfrI	CTTAAG	1 cut(s)	512
BfuI	GTATCC	1 cut(s)	600
BglII	AGATCT	2 cut(s)	355, 462
BlpI	GCTNAGC	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	791
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	2 cut(s)	11, 516
BmuI	ACTGGG	1 cut(s)	174
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
Bpu1102I	GCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	618
BsaAI	YACGTR	2 cut(s)	221, 494
Bse1I	ACTGG	3 cut(s)	180, 570, 715
BseGI	GGATG	2 cut(s)	26, 507
BseMII	CTCAG	4 cut(s)	158, 477, 567, 642
BseNI	ACTGG	3 cut(s)	180, 570, 715
BslFI	GGGAC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	43
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	355, 462, 547
Bsp1720I	GCTNAGC	1 cut(s)	144
BspCNI	CTCAG	4 cut(s)	157, 478, 566, 641
BspLI	GGNNCC	1 cut(s)	791
BspPI	GGATC	1 cut(s)	555
BspTI	CTTAAG	1 cut(s)	512
BsrGI	TGTACA	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	180, 570, 715
BssMI	GATC	3 cut(s)	355, 462, 547
Bst4CI	ACNGT	2 cut(s)	239, 481
Bst6I	CTCTTC	1 cut(s)	651
BstAFI	CTTAAG	1 cut(s)	512
BstAUI	TGTACA	1 cut(s)	12
BstBAI	YACGTR	2 cut(s)	221, 494
BstDEI	CTNAG	4 cut(s)	144, 486, 553, 628
BstF5I	GGATG	2 cut(s)	26, 507
BstKTI	GATC	3 cut(s)	358, 465, 550
BstMBI	GATC	3 cut(s)	355, 462, 547
BstX2I	RGATCY	3 cut(s)	355, 462, 547
BstYI	RGATCY	3 cut(s)	355, 462, 547
BsuI	GTATCC	1 cut(s)	600
BtsCI	GGATG	2 cut(s)	26, 507
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	4 cut(s)	94, 187, 477, 708
Csp6I	GTAC	2 cut(s)	13, 346
CviAII	CATG	2 cut(s)	367, 786
CviQI	GTAC	2 cut(s)	13, 346
DdeI	CTNAG	4 cut(s)	144, 486, 553, 628
DpnI	GATC	3 cut(s)	357, 464, 549
DpnII	GATC	3 cut(s)	355, 462, 547
DraIII	CACNNNGTG	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
FaeI	CATG	2 cut(s)	370, 789
FaiI	YATR	8 cut(s)	133, 218, 330, 368, 608, 654, 731, 787
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	2 cut(s)	366, 785
FblI	GTMKAC	1 cut(s)	824
FokI	GGATG	2 cut(s)	33, 494
FspBI	CTAG	2 cut(s)	408, 844
Hin1II	CATG	2 cut(s)	370, 789
HinfI	GANTC	4 cut(s)	158, 714, 743, 782
HphI	GGTGA	2 cut(s)	236, 551
Hpy166II	GTNNAC	4 cut(s)	176, 285, 542, 825
Hpy188I	TCNGA	7 cut(s)	20, 125, 298, 309, 487, 616, 781
Hpy188III	TCNNGA	6 cut(s)	197, 250, 353, 532, 635, 695
Hpy8I	GTNNAC	4 cut(s)	176, 285, 542, 825
HpyCH4III	ACNGT	2 cut(s)	239, 481
HpyCH4IV	ACGT	2 cut(s)	220, 493
HpyCH4V	TGCA	4 cut(s)	185, 507, 606, 729
HpyF3I	CTNAG	4 cut(s)	144, 486, 553, 628
HpySE526I	ACGT	2 cut(s)	220, 493
Hsp92II	CATG	2 cut(s)	370, 789
Kzo9I	GATC	3 cut(s)	355, 462, 547
LmnI	GCTCC	1 cut(s)	795
LweI	GCATC	2 cut(s)	11, 516
MaeI	CTAG	2 cut(s)	408, 844
MaeII	ACGT	2 cut(s)	220, 493
MaeIII	GTNAC	2 cut(s)	25, 77
MalI	GATC	3 cut(s)	357, 464, 549
MboI	GATC	3 cut(s)	355, 462, 547
MboII	GAAGA	2 cut(s)	520, 668
MflI	RGATCY	3 cut(s)	355, 462, 547
MluCI	AATT	4 cut(s)	153, 390, 579, 621
MmeI	TCCRAC	1 cut(s)	617
MnlI	CCTC	6 cut(s)	40, 257, 303, 513, 652, 787
MroXI	GAANNNNTTC	1 cut(s)	238
MseI	TTAA	4 cut(s)	105, 456, 513, 722
MspCI	CTTAAG	1 cut(s)	512
Mva1269I	GAATGC	1 cut(s)	43
NdeII	GATC	3 cut(s)	355, 462, 547
NlaIII	CATG	2 cut(s)	370, 789
NlaIV	GGNNCC	1 cut(s)	791
NmuCI	GTSAC	1 cut(s)	77
PctI	GAATGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	238
PfeI	GAWTC	4 cut(s)	158, 714, 743, 782
Ppu21I	YACGTR	2 cut(s)	221, 494
PspN4I	GGNNCC	1 cut(s)	791
PsuI	RGATCY	3 cut(s)	355, 462, 547
RsaI	GTAC	2 cut(s)	14, 347
RsaNI	GTAC	2 cut(s)	13, 346
SaqAI	TTAA	4 cut(s)	105, 456, 513, 722
Sau3AI	GATC	3 cut(s)	355, 462, 547
SfaNI	GCATC	2 cut(s)	11, 516
SmlI	CTYRAG	2 cut(s)	512, 633
SmoI	CTYRAG	2 cut(s)	512, 633
Sse9I	AATT	4 cut(s)	153, 390, 579, 621
SspMI	CTAG	2 cut(s)	408, 844
TaaI	ACNGT	2 cut(s)	239, 481
TaiI	ACGT	2 cut(s)	223, 496
TaqI	TCGA	3 cut(s)	276, 290, 829
TasI	AATT	4 cut(s)	153, 390, 579, 621
TatI	WGTACW	2 cut(s)	12, 345
TfiI	GAWTC	4 cut(s)	158, 714, 743, 782
Tru1I	TTAA	4 cut(s)	105, 456, 513, 722
Tru9I	TTAA	4 cut(s)	105, 456, 513, 722
TscAI	CASTG	4 cut(s)	94, 187, 484, 715
TseFI	GTSAC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	5 cut(s)	205, 262, 276, 669, 702
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	4 cut(s)	94, 187, 484, 715
Vha464I	CTTAAG	1 cut(s)	512
XapI	RAATTY	1 cut(s)	621
XmiI	GTMKAC	1 cut(s)	824
XmnI	GAANNNNTTC	1 cut(s)	238
XspI	CTAG	2 cut(s)	408, 844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.