Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002260.1

Orthogroup ID

OG0005479

Physical Location & Seq

Genomic Coordinates Reverse (-)

132728 .. 134180

Gene Structure 1453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002260.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atgtcgtcgctcaatgggattgatcttcagactctagccgccactggtcaactacctgctcaaagccttgccacacttcaagcagccgggctcagtaggtcaacagcaaaatctggcataccaatgccccttgttgatcaaaggaacttgttcagctttgaaaatccaaagttgaggtttgcagaggggcagcaacatcatggcagtggtaaaccaatgaacttacttcacggcattccaacgactatggaggcaaagcagcttgccaacttgcaccagtctgcacagtcccttggggctgtgaatatgcaagtcaatgcccatggagtccaaaacaactctctatatatgataggtcaaccacagtcaagaggacagatcctgaatgaaagtcctgggactcatgttcctaggcttccatcatcaattgggcagcctatggtatcgaacggtattcctagtggagttataggaagaaatgggatttctgatgttggcagagggacaggatataatccagttccgcagaactcttcaatgttgaattttcccttgaacaacactccagaactgccaggcaatagttacactcttggcagcacacaagggatgtccagcctcacgcctaaagggtcatttccagaagaggttaactctgaaataaaaagatctgcgggatttgttccaagttacgatatttttaatgagttacatcagcacaagtccaacgattggaatttacagaatgtaggcttgacctttgatgcctctcaccatgcaaactccatccatggtagccttgactcctcaggtttagttcatcaaggtttttcttctaaccaaaggagtgcacaaagccggaatccatctaatgttgggaaagctatgttcccaatgggggcggcaagcactgatcatgggcatgcgcaaaatagtggtcaacaccttagcaacggtcttattgttgacaatccagttcggattaaatctgaaaggcattctgatgcatctcaaaataacttctttcatgatcaatatggtcaggaggatctaatgagtgcacttctcaaacagcagcaagggggagttggaccatctgaaaatgagtttgactttgatggtgctgcaacagaagaagtcatttcttctgcaatcatggacattaaagatcgtgctgatggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

394

Amino Acids

42.0

Weight (kDa)

6.07

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16857 AT3G16857 AT3G16857
fragaria_vesca	FvH4_4g19230 FvH4_4g19230
malus_domestica	MD13G1159700.v1.1 MD16G1159400.v1.1
prunus_persica	Prupe.1G126400_v2.0.a1 Prupe.1G126400_v2.0.a1
pyrus_communis	pycom13g13610 pycom16g13440
rosa_chinensis	RchiOBHm_Chr4g0424211
rosa_laevigata	RLG00000007496
rosa_multiflora	Rmu_co8430763.1_g000001 Rmu_sc0002260.1_g000035 Rmu_sc0019001.1_g000002 Rmu_sc0028069.1_g000001 Rmu_sc0028070.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366160
rosa_rugosa	Rorug04G0193900 Rorug04G0194000 Rorug04G0194100 Rorug04G0194200 Rorug04G0194300
rosa_samantha	Rh4AG251700 Rh4BG257000 Rh4CG267600 Rh4DG251400
rosa_wichuraiana	Rw4G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	927
Acc36I	ACCTGC	1 cut(s)	64
AccB7I	CCANNNNNTGG	1 cut(s)	732
AciI	CCGC	4 cut(s)	39, 524, 674, 902
AclWI	GGATC	2 cut(s)	373, 1056
AcsI	RAATTY	2 cut(s)	544, 736
AcuI	CTGAAG	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	732, 898
AgsI	TTSAA	5 cut(s)	80, 161, 537, 544, 556
AjnI	CCWGG	2 cut(s)	394, 574
AluBI	AGCT	3 cut(s)	156, 262, 884
AluI	AGCT	3 cut(s)	156, 262, 884
Alw21I	GWGCWC	2 cut(s)	853, 1063
Alw44I	GTGCAC	2 cut(s)	849, 1059
AlwI	GGATC	2 cut(s)	373, 1056
AlwNI	CAGNNNCTG	1 cut(s)	382
ApaLI	GTGCAC	2 cut(s)	849, 1059
ApeKI	GCWGC	7 cut(s)	83, 190, 259, 433, 597, 1075, 1124
ApoI	RAATTY	2 cut(s)	544, 736
ArsI	GACNNNNNNTTYG	2 cut(s)	922, 954
Asp700I	GAANNNNTTC	1 cut(s)	149
AspA2I	CCTAGG	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	928
AspS9I	GGNCC	1 cut(s)	1091
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	764
AvaII	GGWCC	1 cut(s)	1091
AvrII	CCTAGG	1 cut(s)	410
AxyI	CCTNAGG	1 cut(s)	808
BaeGI	GKGCMC	2 cut(s)	853, 1063
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	2 cut(s)	853, 1063
BbvI	GCAGC	7 cut(s)	95, 202, 271, 445, 609, 1087, 1111
BccI	CCATC	6 cut(s)	427, 794, 874, 1102, 1112, 1172
BceAI	ACGGC	1 cut(s)	247
BciT130I	CCWGG	2 cut(s)	396, 576
BclI	TGATCA	3 cut(s)	136, 913, 1030
BcnI	CCSGG	1 cut(s)	88
BfaI	CTAG	3 cut(s)	35, 411, 459
BfuAI	ACCTGC	1 cut(s)	64
BglII	AGATCT	1 cut(s)	668
BisI	GCNGC	9 cut(s)	39, 84, 191, 260, 434, 598, 903, 1076, 1125
BlnI	CCTAGG	1 cut(s)	410
BlsI	GCNGC	9 cut(s)	40, 85, 192, 261, 435, 599, 904, 1077, 1126
Bme1390I	CCNGG	3 cut(s)	88, 396, 576
Bme18I	GGWCC	1 cut(s)	1091
BmgT120I	GGNCC	1 cut(s)	1091
BmrFI	CCNGG	3 cut(s)	88, 396, 576
BmsI	GCATC	3 cut(s)	754, 994, 1016
BplI	GAGNNNNNCTC	2 cut(s)	638, 670
BpmI	CTGGAG	1 cut(s)	549
Bpu10I	CCTNAGC	1 cut(s)	947
BpuMI	CCSGG	1 cut(s)	88
BsaJI	CCNNGG	5 cut(s)	292, 322, 395, 410, 790
Bsc4I	CCNNNNNNNGG	2 cut(s)	732, 898
Bse1I	ACTGG	4 cut(s)	49, 277, 518, 974
Bse21I	CCTNAGG	1 cut(s)	808
BseBI	CCWGG	2 cut(s)	396, 576
BseDI	CCNNGG	5 cut(s)	292, 322, 395, 410, 790
BseGI	GGATG	2 cut(s)	615, 786
BseLI	CCNNNNNNNGG	2 cut(s)	732, 898
BseMII	CTCAG	2 cut(s)	106, 822
BseNI	ACTGG	4 cut(s)	49, 277, 518, 974
BseRI	GAGGAG	1 cut(s)	796
BseSI	GKGCMC	2 cut(s)	853, 1063
BseXI	GCAGC	7 cut(s)	95, 202, 271, 445, 609, 1087, 1111
BsgI	GTGCAG	1 cut(s)	267
BsiHKAI	GWGCWC	2 cut(s)	853, 1063
BsiSI	CCGG	2 cut(s)	87, 859
BslFI	GGGAC	3 cut(s)	274, 412, 517
BslI	CCNNNNNNNGG	2 cut(s)	732, 898
BsmFI	GGGAC	3 cut(s)	274, 412, 517
BsmI	GAATGC	2 cut(s)	234, 997
Bsp1286I	GDGCHC	3 cut(s)	93, 853, 1063
Bsp143I	GATC	8 cut(s)	22, 136, 378, 668, 913, 1030, 1048, 1168
Bsp19I	CCATGG	2 cut(s)	322, 790
BspACI	CCGC	4 cut(s)	39, 524, 674, 902
BspCNI	CTCAG	2 cut(s)	105, 821
BspHI	TCATGA	1 cut(s)	1027
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	2 cut(s)	373, 1056
BsrI	ACTGG	4 cut(s)	49, 277, 518, 974
BssECI	CCNNGG	5 cut(s)	292, 322, 395, 410, 790
BssMI	GATC	8 cut(s)	22, 136, 378, 668, 913, 1030, 1048, 1168
BssT1I	CCWWGG	4 cut(s)	292, 322, 410, 790
Bst2UI	CCWGG	2 cut(s)	396, 576
Bst4CI	ACNGT	4 cut(s)	288, 366, 452, 956
Bst6I	CTCTTC	2 cut(s)	538, 639
BstC8I	GCNNGC	3 cut(s)	264, 907, 924
BstDEI	CTNAG	3 cut(s)	92, 808, 947
BstDSI	CCRYGG	2 cut(s)	322, 790
BstF5I	GGATG	2 cut(s)	615, 786
BstHHI	GCGC	1 cut(s)	928
BstKTI	GATC	8 cut(s)	25, 139, 381, 671, 916, 1033, 1051, 1171
BstMBI	GATC	8 cut(s)	22, 136, 378, 668, 913, 1030, 1048, 1168
BstNI	CCWGG	2 cut(s)	396, 576
BstNSI	RCATGY	1 cut(s)	926
BstSCI	CCNGG	3 cut(s)	86, 394, 574
BstSLI	GKGCMC	2 cut(s)	853, 1063
BstV1I	GCAGC	7 cut(s)	95, 202, 271, 445, 609, 1087, 1111
BstX2I	RGATCY	3 cut(s)	378, 668, 1048
BstYI	RGATCY	3 cut(s)	378, 668, 1048
Bsu36I	CCTNAGG	1 cut(s)	808
BtgI	CCRYGG	2 cut(s)	322, 790
BtsCI	GGATG	2 cut(s)	615, 786
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	3 cut(s)	42, 211, 909
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	3 cut(s)	264, 907, 924
CaiI	CAGNNNCTG	1 cut(s)	382
CciI	TCATGA	1 cut(s)	1027
CfoI	GCGC	1 cut(s)	928
Cfr13I	GGNCC	1 cut(s)	1091
CviAII	CATG	9 cut(s)	200, 323, 404, 776, 791, 917, 923, 1028, 1156
DdeI	CTNAG	3 cut(s)	92, 808, 947
DpnI	GATC	8 cut(s)	24, 138, 380, 670, 915, 1032, 1050, 1170
DpnII	GATC	8 cut(s)	22, 136, 378, 668, 913, 1030, 1048, 1168
Eam1104I	CTCTTC	2 cut(s)	538, 639
EarI	CTCTTC	2 cut(s)	538, 639
Eco130I	CCWWGG	4 cut(s)	292, 322, 410, 790
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	1091
Eco57I	CTGAAG	1 cut(s)	11
Eco81I	CCTNAGG	1 cut(s)	808
EcoRII	CCWGG	2 cut(s)	394, 574
EcoT14I	CCWWGG	4 cut(s)	292, 322, 410, 790
EcoT22I	ATGCAT	1 cut(s)	1009
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	4 cut(s)	292, 322, 410, 790
FaeI	CATG	9 cut(s)	203, 326, 407, 779, 794, 920, 926, 1031, 1159
FaqI	GGGAC	3 cut(s)	274, 412, 517
FatI	CATG	9 cut(s)	199, 322, 403, 775, 790, 916, 922, 1027, 1155
FauI	CCCGC	1 cut(s)	667
FbaI	TGATCA	3 cut(s)	136, 913, 1030
Fnu4HI	GCNGC	9 cut(s)	39, 84, 191, 260, 434, 598, 903, 1076, 1125
FokI	GGATG	2 cut(s)	622, 773
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	9 cut(s)	39, 84, 191, 260, 434, 598, 903, 1076, 1125
FspBI	CTAG	3 cut(s)	35, 411, 459
FspI	TGCGCA	1 cut(s)	927
GlaI	GCGC	1 cut(s)	927
GluI	GCNGC	9 cut(s)	39, 84, 191, 260, 434, 598, 903, 1076, 1125
GsuI	CTGGAG	1 cut(s)	549
HapII	CCGG	2 cut(s)	87, 859
HhaI	GCGC	1 cut(s)	928
Hin1II	CATG	9 cut(s)	203, 326, 407, 779, 794, 920, 926, 1031, 1159
Hin6I	GCGC	1 cut(s)	926
HinP1I	GCGC	1 cut(s)	926
HincII	GTYRAC	6 cut(s)	50, 102, 359, 652, 941, 967
HindII	GTYRAC	6 cut(s)	50, 102, 359, 652, 941, 967
HinfI	GANTC	5 cut(s)	31, 327, 400, 803, 862
HpaI	GTTAAC	1 cut(s)	652
HpaII	CCGG	2 cut(s)	87, 859
HphI	GGTGA	1 cut(s)	764
Hpy166II	GTNNAC	9 cut(s)	50, 102, 212, 359, 652, 851, 941, 967, 1061
Hpy188I	TCNGA	7 cut(s)	30, 490, 658, 981, 991, 1003, 1099
Hpy188III	TCNNGA	6 cut(s)	369, 382, 566, 641, 1028, 1043
Hpy8I	GTNNAC	9 cut(s)	50, 102, 212, 359, 652, 851, 941, 967, 1061
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4III	ACNGT	4 cut(s)	288, 366, 452, 956
HpyF3I	CTNAG	3 cut(s)	92, 808, 947
Hsp92II	CATG	9 cut(s)	203, 326, 407, 779, 794, 920, 926, 1031, 1159
HspAI	GCGC	1 cut(s)	926
Ksp22I	TGATCA	3 cut(s)	136, 913, 1030
KspAI	GTTAAC	1 cut(s)	652
Kzo9I	GATC	8 cut(s)	22, 136, 378, 668, 913, 1030, 1048, 1168
Lsp1109I	GCAGC	7 cut(s)	95, 202, 271, 445, 609, 1087, 1111
LweI	GCATC	3 cut(s)	754, 994, 1016
MaeI	CTAG	3 cut(s)	35, 411, 459
MaeIII	GTNAC	3 cut(s)	584, 689, 708
MalI	GATC	8 cut(s)	24, 138, 380, 670, 915, 1032, 1050, 1170
MboI	GATC	8 cut(s)	22, 136, 378, 668, 913, 1030, 1048, 1168
MboII	GAAGA	7 cut(s)	17, 486, 525, 656, 825, 1137, 1145
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	3 cut(s)	378, 668, 1048
MhlI	GDGCHC	3 cut(s)	93, 853, 1063
MluCI	AATT	3 cut(s)	426, 544, 736
MlyI	GAGTC	4 cut(s)	25, 336, 394, 797
MmeI	TCCRAC	3 cut(s)	263, 750, 1069
Mph1103I	ATGCAT	1 cut(s)	1009
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	4 cut(s)	651, 702, 984, 1164
MslI	CAYNNNNRTG	4 cut(s)	122, 204, 921, 1002
MspI	CCGG	2 cut(s)	87, 859
MspR9I	CCNGG	3 cut(s)	88, 396, 576
MunI	CAATTG	1 cut(s)	426
Mva1269I	GAATGC	2 cut(s)	234, 997
MvaI	CCWGG	2 cut(s)	396, 576
NciI	CCSGG	1 cut(s)	88
NcoI	CCATGG	2 cut(s)	322, 790
NdeII	GATC	8 cut(s)	22, 136, 378, 668, 913, 1030, 1048, 1168
NlaIII	CATG	9 cut(s)	203, 326, 407, 779, 794, 920, 926, 1031, 1159
NsbI	TGCGCA	1 cut(s)	927
NsiI	ATGCAT	1 cut(s)	1009
NspI	RCATGY	1 cut(s)	926
PaeI	GCATGC	1 cut(s)	926
PagI	TCATGA	1 cut(s)	1027
PctI	GAATGC	2 cut(s)	234, 997
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	862
PflMI	CCANNNNNTGG	1 cut(s)	732
PkrI	GCNGC	9 cut(s)	40, 85, 192, 261, 435, 599, 904, 1077, 1126
PleI	GAGTC	4 cut(s)	25, 335, 394, 797
PpsI	GAGTC	4 cut(s)	25, 335, 394, 797
Psp6I	CCWGG	2 cut(s)	394, 574
PspGI	CCWGG	2 cut(s)	394, 574
PspPI	GGNCC	1 cut(s)	1091
PstNI	CAGNNNCTG	1 cut(s)	382
PsuI	RGATCY	3 cut(s)	378, 668, 1048
RseI	CAYNNNNRTG	4 cut(s)	122, 204, 921, 1002
SaqAI	TTAA	4 cut(s)	651, 702, 984, 1164
SatI	GCNGC	9 cut(s)	39, 84, 191, 260, 434, 598, 903, 1076, 1125
Sau3AI	GATC	8 cut(s)	22, 136, 378, 668, 913, 1030, 1048, 1168
Sau96I	GGNCC	1 cut(s)	1091
SchI	GAGTC	4 cut(s)	25, 336, 394, 797
ScrFI	CCNGG	3 cut(s)	88, 396, 576
SduI	GDGCHC	3 cut(s)	93, 853, 1063
SfaNI	GCATC	3 cut(s)	754, 994, 1016
SinI	GGWCC	1 cut(s)	1091
SmiMI	CAYNNNNRTG	4 cut(s)	122, 204, 921, 1002
SphI	GCATGC	1 cut(s)	926
Sse9I	AATT	3 cut(s)	426, 544, 736
SsiI	CCGC	4 cut(s)	39, 524, 674, 902
SspMI	CTAG	3 cut(s)	35, 411, 459
StyD4I	CCNGG	3 cut(s)	86, 394, 574
StyI	CCWWGG	4 cut(s)	292, 322, 410, 790
TaaI	ACNGT	4 cut(s)	288, 366, 452, 956
TaqI	TCGA	1 cut(s)	446
TasI	AATT	3 cut(s)	426, 544, 736
TauI	GCSGC	2 cut(s)	41, 905
TfiI	GAWTC	1 cut(s)	862
Tru1I	TTAA	4 cut(s)	651, 702, 984, 1164
Tru9I	TTAA	4 cut(s)	651, 702, 984, 1164
TscAI	CASTG	3 cut(s)	49, 211, 916
TseI	GCWGC	7 cut(s)	83, 190, 259, 433, 597, 1075, 1124
TspDTI	ATGAA	4 cut(s)	233, 402, 809, 1016
TspRI	CASTG	3 cut(s)	49, 211, 916
Van91I	CCANNNNNTGG	1 cut(s)	732
VneI	GTGCAC	2 cut(s)	849, 1059
VpaK11BI	GGWCC	1 cut(s)	1091
XapI	RAATTY	2 cut(s)	544, 736
XceI	RCATGY	1 cut(s)	926
XmaJI	CCTAGG	1 cut(s)	410
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	3 cut(s)	35, 411, 459
Zsp2I	ATGCAT	1 cut(s)	1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.