Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8430763.1

Orthogroup ID

OG0005479

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1077

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8430763.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgcctgacatggatggattcaagctcctcgagcaaattggactagagatggacctgccggttatcatgatgtctgctgatgatgggaaaagtgttgttatgaagggtgtcactcatggtgcttgtgattatctaatcaaaccggtccgcattgaggcgctaaagaacatatggcagcatgtagttcgaaagaagaagaatgagtggaaggatgtggagcaatctggaagtgtggacgagggagatcggcaacaaaaaccatgtgaagaaccagattactcatcttcagcaaatgaagggacttggaagaactcaaagaagaggaaagatgaggacgacgatgcggaggatagggatgatacatccacgttaaagaagcctagggtggtttggtcggttgagctccatcaacaatttgtcggtgctgtcaatcaattaggcattgataaggcggttcctaagaaaattttggagttgatgaatgttcctgggctcactagagaaaatgttgctagccatctacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

175

Amino Acids

19.8

Weight (kDa)

5.3

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16857 AT3G16857 AT3G16857
fragaria_vesca	FvH4_4g19230 FvH4_4g19230
malus_domestica	MD13G1159700.v1.1 MD16G1159400.v1.1
prunus_persica	Prupe.1G126400_v2.0.a1 Prupe.1G126400_v2.0.a1
pyrus_communis	pycom13g13610 pycom16g13440
rosa_chinensis	RchiOBHm_Chr4g0424211
rosa_laevigata	RLG00000007496
rosa_multiflora	Rmu_co8430763.1_g000001 Rmu_sc0002260.1_g000035 Rmu_sc0019001.1_g000002 Rmu_sc0028069.1_g000001 Rmu_sc0028070.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366160
rosa_rugosa	Rorug04G0193900 Rorug04G0194000 Rorug04G0194100 Rorug04G0194200 Rorug04G0194300
rosa_samantha	Rh4AG251700 Rh4BG257000 Rh4CG267600 Rh4DG251400
rosa_wichuraiana	Rw4G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	63
AciI	CCGC	3 cut(s)	148, 344, 452
AcsI	RAATTY	1 cut(s)	465
AcuI	CTGAAG	1 cut(s)	270
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgeI	ACCGGT	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	487
AluBI	AGCT	2 cut(s)	25, 403
AluI	AGCT	2 cut(s)	25, 403
Alw21I	GWGCWC	1 cut(s)	405
Ama87I	CYCGRG	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	175
ApoI	RAATTY	1 cut(s)	465
AsiGI	ACCGGT	1 cut(s)	142
AspA2I	CCTAGG	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	2 cut(s)	52, 145
AsuII	TTCGAA	1 cut(s)	187
AsuNHI	GCTAGC	1 cut(s)	512
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	2 cut(s)	52, 145
AvrII	CCTAGG	1 cut(s)	380
BanII	GRGCYC	2 cut(s)	405, 495
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	4 cut(s)	8, 43, 77, 414
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciT130I	CCWGG	1 cut(s)	489
BfaI	CTAG	4 cut(s)	44, 381, 498, 513
BfmI	CTRYAG	1 cut(s)	521
BfoI	RGCGCY	1 cut(s)	161
BfuAI	ACCTGC	1 cut(s)	63
BisI	GCNGC	1 cut(s)	176
BlnI	CCTAGG	1 cut(s)	380
BlsI	GCNGC	1 cut(s)	177
Bme1390I	CCNGG	1 cut(s)	489
Bme18I	GGWCC	2 cut(s)	52, 145
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	52, 145
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	1 cut(s)	331
BmtI	GCTAGC	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	380, 488
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse118I	RCCGGY	2 cut(s)	58, 142
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	380, 488
BseGI	GGATG	4 cut(s)	19, 217, 361, 362
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	187
BshTI	ACCGGT	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	405
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	59, 143
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	187
Bsp1286I	GDGCHC	2 cut(s)	405, 495
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	3 cut(s)	148, 344, 452
BspHI	TCATGA	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	456
BspMI	ACCTGC	1 cut(s)	63
BspOI	GCTAGC	1 cut(s)	516
BspT104I	TTCGAA	1 cut(s)	187
BsrFI	RCCGGY	2 cut(s)	58, 142
BssAI	RCCGGY	2 cut(s)	58, 142
BssECI	CCNNGG	2 cut(s)	380, 488
BssMI	GATC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	489
Bst6I	CTCTTC	1 cut(s)	314
BstBI	TTCGAA	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	1 cut(s)	459
BstF5I	GGATG	4 cut(s)	19, 217, 361, 362
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	487
BstSFI	CTRYAG	1 cut(s)	521
BstV1I	GCAGC	1 cut(s)	187
BtsCI	GGATG	4 cut(s)	19, 217, 361, 362
BveI	ACCTGC	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	514
CciI	TCATGA	1 cut(s)	66
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	2 cut(s)	58, 142
Cfr13I	GGNCC	2 cut(s)	52, 145
CpoI	CGGWCCG	1 cut(s)	145
CspAI	ACCGGT	1 cut(s)	142
CspI	CGGWCCG	1 cut(s)	145
CviAII	CATG	5 cut(s)	10, 67, 116, 179, 261
CviJI	RGCY	5 cut(s)	25, 379, 403, 493, 516
CviKI_1	RGCY	5 cut(s)	25, 379, 403, 493, 516
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	380
Eco24I	GRGCYC	2 cut(s)	405, 495
Eco47I	GGWCC	2 cut(s)	52, 145
Eco53kI	GAGCTC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	29
EcoICRI	GAGCTC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	380
EcoT38I	GRGCYC	2 cut(s)	405, 495
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	5 cut(s)	13, 70, 119, 182, 264
FaiI	YATR	8 cut(s)	11, 68, 101, 117, 170, 172, 180, 262
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	5 cut(s)	9, 66, 115, 178, 260
FauNDI	CATATG	1 cut(s)	170
Fnu4HI	GCNGC	1 cut(s)	176
FokI	GGATG	4 cut(s)	26, 224, 349, 368
FriOI	GRGCYC	2 cut(s)	405, 495
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	4 cut(s)	44, 381, 498, 513
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	176
HaeII	RGCGCY	1 cut(s)	161
HapII	CCGG	2 cut(s)	59, 143
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	5 cut(s)	13, 70, 119, 182, 264
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	1 cut(s)	18
HpaII	CCGG	2 cut(s)	59, 143
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188III	TCNNGA	2 cut(s)	67, 225
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	3 cut(s)	97, 202, 290
HpyCH4IV	ACGT	1 cut(s)	368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	1 cut(s)	459
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	5 cut(s)	13, 70, 119, 182, 264
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	3 cut(s)	30, 217, 408
LpnPI	CCDG	8 cut(s)	18, 68, 72, 156, 210, 285, 474, 501
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	4 cut(s)	44, 381, 498, 513
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	6 cut(s)	205, 208, 276, 278, 319, 331
MhlI	GDGCHC	2 cut(s)	405, 495
MluCI	AATT	4 cut(s)	36, 413, 434, 465
MnlI	CCTC	6 cut(s)	38, 148, 232, 315, 325, 340
MseI	TTAA	1 cut(s)	371
MspI	CCGG	2 cut(s)	59, 143
MspR9I	CCNGG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeI	CATATG	1 cut(s)	170
NdeII	GATC	1 cut(s)	244
NheI	GCTAGC	1 cut(s)	512
NlaIII	CATG	5 cut(s)	13, 70, 119, 182, 264
NlaIV	GGNNCC	1 cut(s)	456
NmuCI	GTSAC	1 cut(s)	109
NspI	RCATGY	1 cut(s)	182
NspV	TTCGAA	1 cut(s)	187
PaeR7I	CTCGAG	1 cut(s)	29
PagI	TCATGA	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	18
PinAI	ACCGGT	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	456
PspPI	GGNCC	2 cut(s)	52, 145
PspXI	VCTCGAGB	1 cut(s)	29
Rsr2I	CGGWCCG	1 cut(s)	145
RsrII	CGGWCCG	1 cut(s)	145
SacI	GAGCTC	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	2 cut(s)	52, 145
ScrFI	CCNGG	1 cut(s)	489
SduI	GDGCHC	2 cut(s)	405, 495
SetI	ASST	4 cut(s)	27, 57, 371, 405
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	521
Sfr274I	CTCGAG	1 cut(s)	29
SfuI	TTCGAA	1 cut(s)	187
SinI	GGWCC	2 cut(s)	52, 145
SlaI	CTCGAG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	4 cut(s)	36, 413, 434, 465
SsiI	CCGC	3 cut(s)	148, 344, 452
SspMI	CTAG	4 cut(s)	44, 381, 498, 513
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	487
StyI	CCWWGG	1 cut(s)	380
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	2 cut(s)	30, 187
TasI	AATT	4 cut(s)	36, 413, 434, 465
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	3 cut(s)	116, 309, 494
VpaK11BI	GGWCC	2 cut(s)	52, 145
XapI	RAATTY	1 cut(s)	465
XceI	RCATGY	1 cut(s)	182
XhoI	CTCGAG	1 cut(s)	29
XmaJI	CCTAGG	1 cut(s)	380
XspI	CTAG	4 cut(s)	44, 381, 498, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.