Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028069.1

Orthogroup ID

OG0005479

Physical Location & Seq

Genomic Coordinates Forward (+)

190 .. 645

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028069.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgtcgtcgctcaatgggattgatcttcagactctagccgccactggtcaactacctgctcaaagccttgccacacttcaagcagccgggctcagtaggtcaacagcaaaatctggcataccaatgccccttgttgatcaaaggaacttgttcagctttgaaaatccaaagttgaggtttgcagaggggcagcaacatcatggcagtggtaaaccaatgaacttacttcacggcattccaacgactatggaggcaaagcagcttgccaacttgcaccagtctgcacaatcccttggggctgtgaatatgcaagtcaatgcccatggagtccaaaacaactctctatatatgataggtcaaccacagtcaagagggcagatcctgaatgaaagtcctgggactcatgttcctaggcttccatcatcaattgggcagcctatggtatcgaacggtatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

152

Amino Acids

16.08

Weight (kDa)

9.81

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16857 AT3G16857 AT3G16857
fragaria_vesca	FvH4_4g19230 FvH4_4g19230
malus_domestica	MD13G1159700.v1.1 MD16G1159400.v1.1
prunus_persica	Prupe.1G126400_v2.0.a1 Prupe.1G126400_v2.0.a1
pyrus_communis	pycom13g13610 pycom16g13440
rosa_chinensis	RchiOBHm_Chr4g0424211
rosa_laevigata	RLG00000007496
rosa_multiflora	Rmu_co8430763.1_g000001 Rmu_sc0002260.1_g000035 Rmu_sc0019001.1_g000002 Rmu_sc0028069.1_g000001 Rmu_sc0028070.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366160
rosa_rugosa	Rorug04G0193900 Rorug04G0194000 Rorug04G0194100 Rorug04G0194200 Rorug04G0194300
rosa_samantha	Rh4AG251700 Rh4BG257000 Rh4CG267600 Rh4DG251400
rosa_wichuraiana	Rw4G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	64
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	80, 161
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	2 cut(s)	156, 262
AluI	AGCT	2 cut(s)	156, 262
AlwI	GGATC	1 cut(s)	373
AlwNI	CAGNNNCTG	1 cut(s)	382
ApeKI	GCWGC	4 cut(s)	83, 190, 259, 433
Asp700I	GAANNNNTTC	1 cut(s)	149
AspA2I	CCTAGG	1 cut(s)	410
AsuC2I	CCSGG	1 cut(s)	88
AvrII	CCTAGG	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	93
BbvI	GCAGC	4 cut(s)	95, 202, 271, 445
BccI	CCATC	1 cut(s)	427
BceAI	ACGGC	1 cut(s)	247
BciT130I	CCWGG	1 cut(s)	396
BclI	TGATCA	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	88
BfaI	CTAG	2 cut(s)	35, 411
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	5 cut(s)	39, 84, 191, 260, 434
BlnI	CCTAGG	1 cut(s)	410
BlsI	GCNGC	5 cut(s)	40, 85, 192, 261, 435
Bme1390I	CCNGG	2 cut(s)	88, 396
BmrFI	CCNGG	2 cut(s)	88, 396
BpuMI	CCSGG	1 cut(s)	88
BsaJI	CCNNGG	4 cut(s)	292, 322, 395, 410
Bse1I	ACTGG	2 cut(s)	49, 277
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	4 cut(s)	292, 322, 395, 410
BseMII	CTCAG	1 cut(s)	106
BseNI	ACTGG	2 cut(s)	49, 277
BseXI	GCAGC	4 cut(s)	95, 202, 271, 445
BsgI	GTGCAG	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	412
BsmI	GAATGC	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	3 cut(s)	22, 136, 378
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	49, 277
BssECI	CCNNGG	4 cut(s)	292, 322, 395, 410
BssMI	GATC	3 cut(s)	22, 136, 378
BssT1I	CCWWGG	3 cut(s)	292, 322, 410
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	2 cut(s)	366, 452
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	92
BstDSI	CCRYGG	1 cut(s)	322
BstKTI	GATC	3 cut(s)	25, 139, 381
BstMBI	GATC	3 cut(s)	22, 136, 378
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	2 cut(s)	86, 394
BstV1I	GCAGC	4 cut(s)	95, 202, 271, 445
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
BtgI	CCRYGG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	42, 211
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	264
CaiI	CAGNNNCTG	1 cut(s)	382
CviAII	CATG	3 cut(s)	200, 323, 404
CviJI	RGCY	9 cut(s)	38, 66, 86, 91, 156, 262, 299, 415, 436
CviKI_1	RGCY	9 cut(s)	38, 66, 86, 91, 156, 262, 299, 415, 436
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	3 cut(s)	24, 138, 380
DpnII	GATC	3 cut(s)	22, 136, 378
Eco130I	CCWWGG	3 cut(s)	292, 322, 410
Eco24I	GRGCYC	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	394
EcoT14I	CCWWGG	3 cut(s)	292, 322, 410
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	3 cut(s)	292, 322, 410
FaeI	CATG	3 cut(s)	203, 326, 407
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	3 cut(s)	199, 322, 403
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	5 cut(s)	39, 84, 191, 260, 434
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	5 cut(s)	39, 84, 191, 260, 434
FspBI	CTAG	2 cut(s)	35, 411
GluI	GCNGC	5 cut(s)	39, 84, 191, 260, 434
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	3 cut(s)	203, 326, 407
HincII	GTYRAC	3 cut(s)	50, 102, 359
HindII	GTYRAC	3 cut(s)	50, 102, 359
HinfI	GANTC	3 cut(s)	31, 327, 400
HpaII	CCGG	1 cut(s)	87
Hpy166II	GTNNAC	4 cut(s)	50, 102, 212, 359
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	2 cut(s)	369, 382
Hpy8I	GTNNAC	4 cut(s)	50, 102, 212, 359
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4III	ACNGT	2 cut(s)	366, 452
HpyCH4V	TGCA	4 cut(s)	182, 274, 284, 310
HpyF3I	CTNAG	1 cut(s)	92
Hsp92II	CATG	3 cut(s)	203, 326, 407
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	22, 136, 378
LpnPI	CCDG	8 cut(s)	30, 69, 99, 100, 290, 381, 395, 408
Lsp1109I	GCAGC	4 cut(s)	95, 202, 271, 445
MaeI	CTAG	2 cut(s)	35, 411
MalI	GATC	3 cut(s)	24, 138, 380
MboI	GATC	3 cut(s)	22, 136, 378
MboII	GAAGA	1 cut(s)	17
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	1 cut(s)	378
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	1 cut(s)	426
MlyI	GAGTC	3 cut(s)	25, 336, 394
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	4 cut(s)	168, 178, 244, 365
MroXI	GAANNNNTTC	1 cut(s)	149
MslI	CAYNNNNRTG	2 cut(s)	122, 204
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	2 cut(s)	88, 396
MunI	CAATTG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	396
NciI	CCSGG	1 cut(s)	88
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	3 cut(s)	22, 136, 378
NlaIII	CATG	3 cut(s)	203, 326, 407
PctI	GAATGC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	149
PkrI	GCNGC	5 cut(s)	40, 85, 192, 261, 435
PleI	GAGTC	3 cut(s)	25, 335, 394
PpsI	GAGTC	3 cut(s)	25, 335, 394
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	378
RseI	CAYNNNNRTG	2 cut(s)	122, 204
SatI	GCNGC	5 cut(s)	39, 84, 191, 260, 434
Sau3AI	GATC	3 cut(s)	22, 136, 378
SchI	GAGTC	3 cut(s)	25, 336, 394
ScrFI	CCNGG	2 cut(s)	88, 396
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	6 cut(s)	58, 101, 158, 179, 264, 358
SmiMI	CAYNNNNRTG	2 cut(s)	122, 204
Sse9I	AATT	1 cut(s)	426
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	2 cut(s)	35, 411
StyD4I	CCNGG	2 cut(s)	86, 394
StyI	CCWWGG	3 cut(s)	292, 322, 410
TaaI	ACNGT	2 cut(s)	366, 452
TaqI	TCGA	1 cut(s)	446
TasI	AATT	1 cut(s)	426
TauI	GCSGC	1 cut(s)	41
TscAI	CASTG	2 cut(s)	49, 211
TseI	GCWGC	4 cut(s)	83, 190, 259, 433
TspDTI	ATGAA	2 cut(s)	233, 402
TspRI	CASTG	2 cut(s)	49, 211
XmaJI	CCTAGG	1 cut(s)	410
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	2 cut(s)	35, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.